Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Forward (+)

450210 .. 452848

Gene Structure 2639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG005800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGGAAGCTACTGAGGGGTAGGGATGATGAGTATGGAGGTGTGATCGTCCACCTCCACATGGATGATGATGAGGCTATGGACCCTGCCACTTTCATTTCATCTCTCACCTCTTCAGTTGCGGTTTGGAAGCTCCAGGGGAAGAAGGGTGTTTGGCTCAGATTGCCTATACAACGAGCCAACCTTGTTGAAGCTGCAGTCCAGCAAGGATTCTGGTACCACCATGCGGAGCCTCATTATTTGATGCTCGTCTATTGGCTTCCCAAGTCTGCTCATACTCTTCCTGAAAATGCCACGCACCGACTCGGAATTGGTGCTTTTCTAATCAATCAAAACAGAGAGGTGTTAGTAGTCCAAGAAAAGGGAGGACAGTATGGTGGGACAGGCGTGTGGAAGCTCCCTACTGGAGCTGTCGATGAGGGGGAAGATATCTATGCAGCAGCTGTGAGAGAAGTTAAAGAAGAAACAGGTATTGACTCAGAGTTTATAGAAATTCTAGCATTCAGACAGATCCACAAGTCGTTCTTTCAGAAATCGGATTTGTTTTTTCTGTGCATGTTGCGACCCCTCTCCTTTGACATCCAGAAGCAGGAACAAGAGATAGAAGCAGCCAAGTGGATGCCATTTGAGGAATATGCAGCTCAACCATATGCCCAGAAATATGAGTTTCTGATGTACCTCCATGACATATGCAAAGCAAAGATTGATGGGAACTATACTGGATTTTCTCCAATACCTACAACTAGTTATTCTGTTCAGAAGAGCTACTTGTACTTGAATAGTACCGAAGCACCCAAGAGATTTAGTAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

271

Amino Acids

30.98

Weight (kDa)

5.86

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	5 - 87	9.4e-29	Nudix hydrolase domain
NUDIX	PF00293	100 - 219	1.2e-25	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AciI	CCGC	2 cut(s)	122, 227
AclWI	GGATC	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	4 cut(s)	218, 677, 773, 784
AfiI	CCNNNNNNNGG	4 cut(s)	61, 226, 361, 589
AgsI	TTSAA	2 cut(s)	191, 778
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	8 cut(s)	10, 133, 194, 397, 410, 443, 641, 765
AluI	AGCT	8 cut(s)	10, 133, 194, 397, 410, 443, 641, 765
AlwI	GGATC	1 cut(s)	505
AlwNI	CAGNNNCTG	1 cut(s)	443
ApeKI	GCWGC	5 cut(s)	194, 437, 440, 608, 638
ApoI	RAATTY	1 cut(s)	492
Asp718I	GGTACC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	216
BbvI	GCAGC	5 cut(s)	181, 449, 452, 620, 650
BccI	CCATC	1 cut(s)	701
BciT130I	CCWGG	1 cut(s)	137
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	2 cut(s)	497, 744
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	5 cut(s)	195, 438, 441, 609, 639
BlsI	GCNGC	5 cut(s)	196, 439, 442, 610, 640
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	3 cut(s)	84, 218, 231
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	234, 609
BpmI	CTGGAG	2 cut(s)	119, 426
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 226, 361, 589
Bse1I	ACTGG	2 cut(s)	409, 724
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	4 cut(s)	31, 70, 579, 624
BseLI	CCNNNNNNNGG	4 cut(s)	61, 226, 361, 589
BseMII	CTCAG	3 cut(s)	5, 172, 492
BseNI	ACTGG	2 cut(s)	409, 724
BseXI	GCAGC	5 cut(s)	181, 449, 452, 620, 650
BshNI	GGYRCC	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	4 cut(s)	61, 226, 361, 589
BsmFI	GGGAC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	500
Bsp143I	GATC	2 cut(s)	45, 510
BspACI	CCGC	2 cut(s)	122, 227
BspCNI	CTCAG	3 cut(s)	6, 171, 491
BspLI	GGNNCC	3 cut(s)	84, 218, 231
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	505
BspQI	GCTCTTC	1 cut(s)	755
BspT107I	GGYRCC	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	409, 724
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	45, 510
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	3 cut(s)	118, 285, 755
BstDEI	CTNAG	3 cut(s)	14, 158, 478
BstF5I	GGATG	4 cut(s)	31, 70, 579, 624
BstKTI	GATC	2 cut(s)	48, 513
BstMBI	GATC	2 cut(s)	45, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	5 cut(s)	181, 449, 452, 620, 650
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BtsCI	GGATG	4 cut(s)	31, 70, 579, 624
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	4 cut(s)	217, 676, 772, 783
CviAII	CATG	4 cut(s)	61, 224, 556, 683
CviQI	GTAC	4 cut(s)	217, 676, 772, 783
DdeI	CTNAG	3 cut(s)	14, 158, 478
DpnI	GATC	2 cut(s)	47, 512
DpnII	GATC	2 cut(s)	45, 510
Eam1104I	CTCTTC	3 cut(s)	118, 285, 755
EarI	CTCTTC	3 cut(s)	118, 285, 755
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	430
FaeI	CATG	4 cut(s)	64, 227, 559, 686
FalI	AAGNNNNNCTT	4 cut(s)	509, 541, 752, 784
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	4 cut(s)	60, 223, 555, 682
FauNDI	CATATG	2 cut(s)	649, 689
Fnu4HI	GCNGC	5 cut(s)	195, 438, 441, 609, 639
FokI	GGATG	4 cut(s)	38, 77, 566, 631
Fsp4HI	GCNGC	5 cut(s)	195, 438, 441, 609, 639
FspBI	CTAG	2 cut(s)	497, 744
GluI	GCNGC	5 cut(s)	195, 438, 441, 609, 639
GsuI	CTGGAG	2 cut(s)	119, 426
Hin1II	CATG	4 cut(s)	64, 227, 559, 686
HinfI	GANTC	3 cut(s)	210, 303, 476
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	52, 809
Hpy188I	TCNGA	9 cut(s)	161, 308, 481, 506, 531, 538, 672, 759, 815
Hpy188III	TCNNGA	2 cut(s)	284, 583
Hpy8I	GTNNAC	2 cut(s)	52, 809
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	197, 437, 555, 638, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	3 cut(s)	14, 158, 478
Hsp92II	CATG	4 cut(s)	64, 227, 559, 686
KpnI	GGTACC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	45, 510
LguI	GCTCTTC	1 cut(s)	755
LmnI	GCTCC	4 cut(s)	138, 229, 402, 407
Lsp1109I	GCAGC	5 cut(s)	181, 449, 452, 620, 650
LweI	GCATC	2 cut(s)	234, 609
MaeI	CTAG	2 cut(s)	497, 744
MalI	GATC	2 cut(s)	47, 512
MboI	GATC	2 cut(s)	45, 510
MboII	GAAGA	6 cut(s)	105, 154, 272, 437, 473, 772
MflI	RGATCY	1 cut(s)	510
MluCI	AATT	2 cut(s)	309, 492
MlyI	GAGTC	2 cut(s)	297, 470
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeI	CATATG	2 cut(s)	649, 689
NdeII	GATC	2 cut(s)	45, 510
NlaIII	CATG	4 cut(s)	64, 227, 559, 686
NlaIV	GGNNCC	3 cut(s)	84, 218, 231
NspI	RCATGY	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	755
PctI	GAATGC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	210
PkrI	GCNGC	5 cut(s)	196, 439, 442, 610, 640
PleI	GAGTC	2 cut(s)	297, 470
PpsI	GAGTC	2 cut(s)	297, 470
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	84, 218, 231
PspPI	GGNCC	1 cut(s)	82
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	510
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	4 cut(s)	218, 677, 773, 784
RsaNI	GTAC	4 cut(s)	217, 676, 772, 783
RseI	CAYNNNNRTG	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	755
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	5 cut(s)	195, 438, 441, 609, 639
Sau3AI	GATC	2 cut(s)	45, 510
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	2 cut(s)	297, 470
ScrFI	CCNGG	1 cut(s)	137
SfaNI	GCATC	2 cut(s)	234, 609
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	63
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	2 cut(s)	309, 492
SsiI	CCGC	2 cut(s)	122, 227
SspMI	CTAG	2 cut(s)	497, 744
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	309, 492
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TseI	GCWGC	5 cut(s)	194, 437, 440, 608, 638
TspDTI	ATGAA	2 cut(s)	85, 90
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	1 cut(s)	559
XspI	CTAG	2 cut(s)	497, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.