Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8017860.1

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 537

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8017860.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 298 bp

tgaccagtacggaggtgtcatcgtcgacatcatcgatcctatcgaccctgcctccttcctttcatttcttacgtcttcaattgcacattggaaacttgagggcaagaagggtatttggatcaaattgcccatccagcgagtcaatcttgttgaacctgcagtgatgaaaggattctggtatcaccacgcagagcctacttatttgatgctggtaaattggattcctccttcccctcatactcttccagcaaatgcttcccaccgagtcggaattggtgcatttctcctcaatcaaaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

99

Amino Acids

11.1

Weight (kDa)

7.15

Isoelectric Point (pI)

19.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	30, 126
AfaI	GTAC	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	79, 153
AlwI	GGATC	2 cut(s)	30, 126
Asp700I	GAANNNNTTC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	67
BccI	CCATC	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	164
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse1I	ACTGG	1 cut(s)	5
BseCI	ATCGAT	1 cut(s)	34
BseGI	GGATG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	276
BshVI	ATCGAT	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	35, 118
BspDI	ATCGAT	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	30, 126
BsrI	ACTGG	1 cut(s)	5
BssMI	GATC	2 cut(s)	35, 118
Bst6I	CTCTTC	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	38, 121
BstMBI	GATC	2 cut(s)	35, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	34
BsuTUI	ATCGAT	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
BveI	ACCTGC	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	8
CviJI	RGCY	1 cut(s)	194
CviKI_1	RGCY	1 cut(s)	194
CviQI	GTAC	1 cut(s)	8
DpnI	GATC	2 cut(s)	37, 120
DpnII	GATC	2 cut(s)	35, 118
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
FaiI	YATR	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	25
FokI	GGATG	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	4 cut(s)	139, 172, 221, 265
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	270
Hpy8I	GTNNAC	1 cut(s)	26
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	65, 101, 238
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	84, 159, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	35, 118
LpnPI	CCDG	7 cut(s)	18, 61, 147, 161, 169, 195, 259
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	72
MalI	GATC	2 cut(s)	37, 120
MboI	GATC	2 cut(s)	35, 118
MboII	GAAGA	2 cut(s)	67, 234
MfeI	CAATTG	1 cut(s)	79
MluCI	AATT	4 cut(s)	79, 123, 215, 271
MlyI	GAGTC	2 cut(s)	148, 274
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	6, 62, 92, 235, 244, 297
MroXI	GAANNNNTTC	1 cut(s)	171
MunI	CAATTG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	2 cut(s)	35, 118
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 40
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	172, 221
PleI	GAGTC	2 cut(s)	147, 273
PpsI	GAGTC	2 cut(s)	147, 273
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	35, 118
SchI	GAGTC	2 cut(s)	148, 274
SetI	ASST	3 cut(s)	17, 75, 158
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	4 cut(s)	79, 123, 215, 271
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	25, 34, 43
TasI	AATT	4 cut(s)	79, 123, 215, 271
TfiI	GAWTC	2 cut(s)	172, 221
TscAI	CASTG	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	52, 180
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.