Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001858

Physical Location & Seq

Genomic Coordinates Forward (+)

196011 .. 198561

Gene Structure 2551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGGAAGCTGCTGAAGGGTAGGAATGACGAGTATGGAGGTGTGATCGTCCACATGGATGATGATGAGCCTTTGGACACTCCGACTTTCGTTTCATCTCTCAGCTCTTCAATCGCGCTTTGGAAGCAACAGGGCAAGAAGGGTGTTTGGCTCAGGTTGCCTATACAACAAGCCAACCTTGTTGAGGCTGCAATCCAGCAAGGATTCTGGTACCACCATGCGGAGCCTCATTATTTGATGCTCGTCTATTGGATCCCCAACTCTGCTCATACTCTCCCTGAAAATGCCACTCATCGTCTCGGAATTGGTGCTTTTCTCATCAATCAAAACAGAGAGGTGTTGGTTGTCCAAGAGAAGGGAGGACAACATGGGGGAACAGGCCTGTGGAAGCTCCCTACTGGAGCTGTGGATGAGGGGGAAGATATCTATGCAGCAGCTGTGAGAGAAGTTAAAGAAGAAACAGGAATTGACTCCGAGTTTGTGGAAATTCTAGCTTTCAGACAGATCCATAAGTCGTTCTTTGAGAAGTCAGATTTGTTTTTTCTATGCATGTTGCGGCCCCTCTCCTTTGACATCCAGAAGCAGGATCAAGAGATAGAAGCAGCCAAGTGGATGCCGTTTGAGGAATATGCAGCTCAACCATTTGTCCAGAAATATGAGTTTCTGAGGTACCTCCATGACATATGCAAAACAAAGATAGATGGGAACTATACTGGATTTTCTCCTATACCTACAACAACTTATTCTGTACAGAAGAGCTACTTGTACTTAAATAGTGCCCAAGCACCCAACAGACAGAGTAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

270

Amino Acids

30.7

Weight (kDa)

5.73

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	5 - 85	1.7e-30	Nudix hydrolase domain
NUDIX	PF00293	98 - 215	5.2e-26	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47650 AT5G47650 AT5G47650 AT5G47650 AT5G47650
fragaria_vesca	FvH4_3g00340 FvH4_3g00340 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360 FvH4_3g00360
malus_domestica	MD05G1361300.v1.1 MD09G1128200.v1.1 MD10G1338700.v1.1 MD13G1112600.v1.1
prunus_persica	Prupe.4G004000_v2.0.a1 Prupe.4G004100_v2.0.a1
pyrus_communis	pycom10g28840
rosa_chinensis	RchiOBHm_Chr5g0000521 RchiOBHm_Chr5g0000551
rosa_laevigata	RLG00000030874 RLG00000030875
rosa_multiflora	Rmu_co8017860.1_g000001 Rmu_sc0003699.1_g000001 Rmu_sc0003699.1_g000002 Rmu_sc0008807.1_g000001 Rmu_sc0008807.1_g000002 Rmu_sc0021546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075650 Rroxscaffold_1G00075660
rosa_rugosa	Rorug04G0384400 Rorug04G0384500 Rorug04G0384600 Rorug04G0384800 Rorug04G0384800
rosa_samantha	Rh5AG004300 Rh5AG004500 Rh5BG005800 Rh5BG006100 Rh5CG004700 Rh5CG004900 Rh5DG004700 Rh5DG004900
rosa_wichuraiana	Rw5G000440 Rw5G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	210, 669
AccB1I	GGYRCC	2 cut(s)	210, 669
AccII	CGCG	1 cut(s)	116
AciI	CCGC	2 cut(s)	221, 556
AclWI	GGATC	4 cut(s)	247, 260, 499, 594
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	4 cut(s)	212, 671, 750, 767
AfiI	CCNNNNNNNGG	4 cut(s)	184, 220, 355, 583
AgsI	TTSAA	1 cut(s)	111
AluBI	AGCT	8 cut(s)	10, 105, 391, 404, 437, 494, 635, 759
AluI	AGCT	8 cut(s)	10, 105, 391, 404, 437, 494, 635, 759
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	4 cut(s)	247, 260, 499, 594
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	379, 557
ApeKI	GCWGC	6 cut(s)	10, 188, 431, 434, 602, 632
ApoI	RAATTY	1 cut(s)	486
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
Asp718I	GGTACC	2 cut(s)	210, 669
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	558
BaeGI	GKGCMC	1 cut(s)	781
BamHI	GGATCC	1 cut(s)	252
BanI	GGYRCC	2 cut(s)	210, 669
BbvI	GCAGC	5 cut(s)	175, 443, 446, 614, 644
BccI	CCATC	1 cut(s)	695
BceAI	ACGGC	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	491
BisI	GCNGC	7 cut(s)	11, 189, 432, 435, 557, 603, 633
BlsI	GCNGC	7 cut(s)	12, 190, 433, 436, 558, 604, 634
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	5 cut(s)	212, 225, 254, 560, 671
BmsI	GCATC	2 cut(s)	228, 603
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 220, 355, 583
Bse1I	ACTGG	2 cut(s)	403, 718
BseGI	GGATG	4 cut(s)	64, 415, 573, 618
BseLI	CCNNNNNNNGG	4 cut(s)	184, 220, 355, 583
BseMII	CTCAG	3 cut(s)	115, 166, 656
BseNI	ACTGG	2 cut(s)	403, 718
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	5 cut(s)	175, 443, 446, 614, 644
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	381, 559
BshNI	GGYRCC	2 cut(s)	210, 669
BslI	CCNNNNNNNGG	4 cut(s)	184, 220, 355, 583
BsmAI	GTCTC	1 cut(s)	302
BsmBI	CGTCTC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	381, 559
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp1407I	TGTACA	1 cut(s)	748
Bsp143I	GATC	4 cut(s)	45, 252, 504, 586
BspACI	CCGC	2 cut(s)	221, 556
BspANI	GGCC	2 cut(s)	381, 559
BspCNI	CTCAG	3 cut(s)	114, 165, 657
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	5 cut(s)	212, 225, 254, 560, 671
BspPI	GGATC	4 cut(s)	247, 260, 499, 594
BspQI	GCTCTTC	2 cut(s)	112, 749
BspT107I	GGYRCC	2 cut(s)	210, 669
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	2 cut(s)	403, 718
BssMI	GATC	4 cut(s)	45, 252, 504, 586
Bst6I	CTCTTC	2 cut(s)	112, 749
BstAUI	TGTACA	1 cut(s)	748
BstDEI	CTNAG	3 cut(s)	101, 152, 665
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	4 cut(s)	64, 415, 573, 618
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	4 cut(s)	48, 255, 507, 589
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	4 cut(s)	45, 252, 504, 586
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 157
BstNSI	RCATGY	1 cut(s)	553
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	5 cut(s)	175, 443, 446, 614, 644
BstX2I	RGATCY	2 cut(s)	252, 504
BstYI	RGATCY	2 cut(s)	252, 504
BsuRI	GGCC	2 cut(s)	381, 559
BtsCI	GGATG	4 cut(s)	64, 415, 573, 618
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	558
Csp6I	GTAC	4 cut(s)	211, 670, 749, 766
CviAII	CATG	5 cut(s)	55, 218, 368, 550, 677
CviQI	GTAC	4 cut(s)	211, 670, 749, 766
DdeI	CTNAG	3 cut(s)	101, 152, 665
DpnI	GATC	4 cut(s)	47, 254, 506, 588
DpnII	GATC	4 cut(s)	45, 252, 504, 586
Eam1104I	CTCTTC	2 cut(s)	112, 749
EarI	CTCTTC	2 cut(s)	112, 749
Eco147I	AGGCCT	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	35
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	551
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	5 cut(s)	58, 221, 371, 553, 680
FalI	AAGNNNNNCTT	6 cut(s)	162, 194, 503, 535, 746, 778
FatI	CATG	5 cut(s)	54, 217, 367, 549, 676
FauNDI	CATATG	1 cut(s)	683
Fnu4HI	GCNGC	7 cut(s)	11, 189, 432, 435, 557, 603, 633
FokI	GGATG	4 cut(s)	71, 422, 560, 625
Fsp4HI	GCNGC	7 cut(s)	11, 189, 432, 435, 557, 603, 633
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	7 cut(s)	11, 189, 432, 435, 557, 603, 633
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	381, 559
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	5 cut(s)	58, 221, 371, 553, 680
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	2 cut(s)	204, 470
Hpy166II	GTNNAC	2 cut(s)	52, 803
Hpy188I	TCNGA	7 cut(s)	84, 302, 475, 500, 532, 666, 809
Hpy188III	TCNNGA	3 cut(s)	577, 590, 649
Hpy8I	GTNNAC	2 cut(s)	52, 803
HpyAV	CCTTC	3 cut(s)	10, 133, 349
HpyCH4V	TGCA	5 cut(s)	191, 431, 549, 632, 687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 157
HpyF3I	CTNAG	3 cut(s)	101, 152, 665
Hsp92II	CATG	5 cut(s)	58, 221, 371, 553, 680
HspAI	GCGC	1 cut(s)	116
KpnI	GGTACC	2 cut(s)	214, 673
Kzo9I	GATC	4 cut(s)	45, 252, 504, 586
LguI	GCTCTTC	2 cut(s)	112, 749
LmnI	GCTCC	3 cut(s)	223, 396, 401
Lsp1109I	GCAGC	5 cut(s)	175, 443, 446, 614, 644
LweI	GCATC	2 cut(s)	228, 603
MaeI	CTAG	1 cut(s)	491
MalI	GATC	4 cut(s)	47, 254, 506, 588
MboI	GATC	4 cut(s)	45, 252, 504, 586
MboII	GAAGA	4 cut(s)	99, 431, 467, 766
MflI	RGATCY	2 cut(s)	252, 504
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	3 cut(s)	303, 465, 486
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	551
MseI	TTAA	2 cut(s)	450, 770
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	124, 157
NdeI	CATATG	1 cut(s)	683
NdeII	GATC	4 cut(s)	45, 252, 504, 586
NlaIII	CATG	5 cut(s)	58, 221, 371, 553, 680
NlaIV	GGNNCC	5 cut(s)	212, 225, 254, 560, 671
NsiI	ATGCAT	1 cut(s)	551
NspI	RCATGY	1 cut(s)	553
PceI	AGGCCT	1 cut(s)	381
PciSI	GCTCTTC	2 cut(s)	112, 749
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	7 cut(s)	12, 190, 433, 436, 558, 604, 634
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PspN4I	GGNNCC	5 cut(s)	212, 225, 254, 560, 671
PspPI	GGNCC	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	252, 504
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	4 cut(s)	212, 671, 750, 767
RsaNI	GTAC	4 cut(s)	211, 670, 749, 766
RseI	CAYNNNNRTG	1 cut(s)	57
SapI	GCTCTTC	2 cut(s)	112, 749
SaqAI	TTAA	2 cut(s)	450, 770
SatI	GCNGC	7 cut(s)	11, 189, 432, 435, 557, 603, 633
Sau3AI	GATC	4 cut(s)	45, 252, 504, 586
Sau96I	GGNCC	1 cut(s)	558
SchI	GAGTC	1 cut(s)	464
SduI	GDGCHC	1 cut(s)	781
SfaNI	GCATC	2 cut(s)	228, 603
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	303, 465, 486
SseBI	AGGCCT	1 cut(s)	381
SsiI	CCGC	2 cut(s)	221, 556
SspMI	CTAG	1 cut(s)	491
StuI	AGGCCT	1 cut(s)	381
TasI	AATT	3 cut(s)	303, 465, 486
TatI	WGTACW	2 cut(s)	748, 765
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	2 cut(s)	450, 770
Tru9I	TTAA	2 cut(s)	450, 770
TseI	GCWGC	6 cut(s)	10, 188, 431, 434, 602, 632
TspDTI	ATGAA	1 cut(s)	84
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	553
XspI	CTAG	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.