Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003088

Physical Location & Seq

Genomic Coordinates Forward (+)

21981902 .. 21984399

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGTTCAACGGCAGAGACACAATTAACTCCGGTGCAAGTCACCGACGACGAAGCTGCCCTCTTCGCCATGCAACTAGCCAGTGCTTCCGTTCTTCCGATGGCTTTAAAATCCGCCTTAGAGCTTGACCTTCTTGAGATTATGGCCAAGAATGGTTCTCCCATGTCTCCTACCGAGATCGCTTCTAAACTTCCGACCAAAAATCCTGAAGCTCCGGTCATGCTCGACCGTATCCTCCGTCTTCTTACGTCTTACTCCGTCTTAACCTGCTCCAACCGTAAACTTTCCGGTGATGGCGTTGAACGGATTTACGGGCTTGGTCCGGTTTGCAAGTATTTGACCAAGAACGAAGATGGTGTTTCCATTGCTGCTCTTTGTCTTATGAACCAAGACAAGGTTCTCATGGAAAGCTGGTACCATTTGAAGGATGCAATTCTTGATGGTGGGATTCCATTCAACAAGGCTTATGGAATGAGCGCGTTCGAGTACCACGGGACTGACCCTAGATTCAACAAGGTCTTTAACAATGGAATGTCTAACCATTCCACAATCACCATGAAGAAGATTCTTGAGACCTATAAGGGTTTTGAAGGATTGACTTCTTTGGTTGATGTTGGTGGTGGCATTGGTGCTACACTCAAAATGATTGTCTCCAAGTACCCTAATCTTAAAGGCATCAACTTTGATCTCCCACATGTCATCGAAGATGCTCCTTCTCATCCTGGTATTGAGCATGTTGGAGGAGATATGTTTGTAAGTGTCCCTAAAGGTGATGCCATATTCATGAAGTGGATATGTCATGACTGGAGTGACGAACATTGCGTGAAATTCTTGAAGAACTGCTACGAGTCACTTCCAGAGGATGGAAAAGTGATATTAGCAGAGTGTATACTTCCAGAGACACCAGACTCAAGCCTCTCAACCAAACAAGTAGTCCATGTCGATTGCATTATGTTGGCTCACAATCCCGGAGGCAAAGAACGAACCGAGAAAGAGTTTGAGGCATTAGCCAAAGCATCAGGCTTCAAGGGCATCAAAGTTGTCTGCGACGCTTTTGGTGTTAACCTTATTGAGTTACTCAAGAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009506 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009812 GO:0009813 GO:0009987 GO:0016020 GO:0016740 GO:0016741 GO:0019438 GO:0019748 GO:0030054 GO:0030744 GO:0030755 GO:0032259 GO:0033799 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046148 GO:0047763 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

363

Amino Acids

39.62

Weight (kDa)

5.62

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	24 - 115	1.7e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	138 - 343	9.2e-79	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54160
fragaria_vesca	FvH4_7g32990
malus_domestica	MD01G1218900.v1.1 MD01G1219000.v1.1 MD01G1228900.v1.1 MD01G1229000.v1.1 MD01G1229100.v1.1 MD07G1209500.v1.1 MD07G1209700.v1.1 MD07G1209800.v1.1 MD07G1300000.v1.1 MD07G1300200.v1.1 MD07G1300300.v1.1 MD07G1300500.v1.1 MD07G1300700.v1.1 MD07G1300900.v1.1 MD07G1301000.v1.1 MD07G1301100.v1.1
prunus_persica	Prupe.2G319700_v2.0.a1 Prupe.2G319700_v2.0.a1
pyrus_communis	pycom01g23690 pycom01g23700 pycom01g23720 pycom07g27240 pycom07g27260 pycom07g27320 pycom07g27330 pycom07g27350
rosa_chinensis	RchiOBHm_Chr1g0382961
rosa_laevigata	RLG00000026145
rosa_roxburghii	Rroxscaffold_4G00277740
rosa_rugosa	Rorug01G0437400
rosa_samantha	Rh1AG462900 Rh1BG419900 Rh1CG433700 Rh1DG451900
rosa_wichuraiana	Rw1G040910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	275
Acc65I	GGTACC	1 cut(s)	414
AccB1I	GGYRCC	1 cut(s)	414
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccI	GTMKAC	1 cut(s)	889
AccII	CGCG	1 cut(s)	479
AciI	CCGC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	827
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	3 cut(s)	416, 488, 659
AfiI	CCNNNNNNNGG	3 cut(s)	394, 424, 863
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	8 cut(s)	9, 302, 424, 457, 511, 590, 835, 1027
AjnI	CCWGG	1 cut(s)	721
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	5 cut(s)	56, 124, 212, 411, 1087
AluI	AGCT	5 cut(s)	56, 124, 212, 411, 1087
Alw26I	GTCTC	5 cut(s)	11, 171, 566, 655, 893
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	56, 368
ApoI	RAATTY	1 cut(s)	827
ArsI	GACNNNNNNTTYG	4 cut(s)	633, 665, 918, 950
Asp718I	GGTACC	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	969
AsuHPI	GGTGA	4 cut(s)	34, 302, 544, 782
AvaII	GGWCC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	414
BarI	GAAGNNNNNNTAC	2 cut(s)	827, 859
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	43, 355
BccI	CCATC	5 cut(s)	94, 287, 347, 434, 857
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	1 cut(s)	723
BciVI	GTATCC	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	969
BcoDI	GTCTC	5 cut(s)	11, 171, 566, 655, 893
BfaI	CTAG	2 cut(s)	77, 504
BfuAI	ACCTGC	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	242
BisI	GCNGC	2 cut(s)	57, 369
BlsI	GCNGC	2 cut(s)	58, 370
Bme1390I	CCNGG	2 cut(s)	723, 969
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	416
BmrFI	CCNGG	2 cut(s)	723, 969
BmsI	GCATC	6 cut(s)	418, 684, 697, 763, 1025, 1041
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	826
BpuEI	CTTGAG	4 cut(s)	155, 590, 895, 1064
BpuMI	CCSGG	1 cut(s)	969
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	1 cut(s)	490
BsaWI	WCCGGW	4 cut(s)	31, 214, 287, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 424, 863
Bse1I	ACTGG	2 cut(s)	81, 809
Bse3DI	GCAATG	2 cut(s)	363, 817
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	3 cut(s)	433, 718, 868
BseLI	CCNNNNNNNGG	3 cut(s)	394, 424, 863
BseMI	GCAATG	2 cut(s)	363, 817
BseNI	ACTGG	2 cut(s)	81, 809
BseRI	GAGGAG	1 cut(s)	756
BseXI	GCAGC	2 cut(s)	43, 355
Bsh1236I	CGCG	1 cut(s)	479
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	5 cut(s)	32, 215, 288, 323, 969
BslFI	GGGAC	2 cut(s)	508, 746
BslI	CCNNNNNNNGG	3 cut(s)	394, 424, 863
BsmAI	GTCTC	5 cut(s)	11, 171, 566, 655, 893
BsmFI	GGGAC	2 cut(s)	508, 746
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	566
Bsp143I	GATC	2 cut(s)	177, 685
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	479
BspHI	TCATGA	2 cut(s)	783, 799
BspLI	GGNNCC	1 cut(s)	416
BspMI	ACCTGC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	414
BspTNI	GGTCTC	1 cut(s)	566
BsrDI	GCAATG	2 cut(s)	363, 817
BsrI	ACTGG	2 cut(s)	81, 809
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	2 cut(s)	177, 685
BssNAI	GTATAC	1 cut(s)	890
Bst1107I	GTATAC	1 cut(s)	890
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	2 cut(s)	230, 278
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	118
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	3 cut(s)	433, 718, 868
BstFNI	CGCG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	2 cut(s)	180, 688
BstMAI	GTCTC	5 cut(s)	11, 171, 566, 655, 893
BstMBI	GATC	2 cut(s)	177, 685
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 1029
BstNI	CCWGG	1 cut(s)	723
BstNSI	RCATGY	2 cut(s)	698, 737
BstSCI	CCNGG	2 cut(s)	721, 967
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	43, 355
BstV2I	GAAGAC	1 cut(s)	233
BstZ17I	GTATAC	1 cut(s)	890
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	3 cut(s)	433, 718, 868
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	275
CciI	TCATGA	2 cut(s)	783, 799
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	1058
Csp6I	GTAC	3 cut(s)	415, 487, 658
CviQI	GTAC	3 cut(s)	415, 487, 658
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	179, 687
DpnII	GATC	2 cut(s)	177, 685
DraI	TTTAAA	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	721
FaqI	GGGAC	2 cut(s)	508, 746
FblI	GTMKAC	1 cut(s)	889
Fnu4HI	GCNGC	2 cut(s)	57, 369
FokI	GGATG	3 cut(s)	440, 705, 875
Fsp4HI	GCNGC	2 cut(s)	57, 369
FspBI	CTAG	2 cut(s)	77, 504
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	2 cut(s)	57, 369
GsuI	CTGGAG	1 cut(s)	826
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	5 cut(s)	32, 215, 288, 323, 969
HgaI	GACGC	1 cut(s)	1058
HhaI	GCGC	1 cut(s)	479
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HinfI	GANTC	5 cut(s)	448, 507, 565, 848, 908
HpaI	GTTAAC	1 cut(s)	1063
HpaII	CCGG	5 cut(s)	32, 215, 288, 323, 969
HphI	GGTGA	4 cut(s)	34, 302, 544, 782
Hpy166II	GTNNAC	3 cut(s)	281, 890, 1063
Hpy188I	TCNGA	2 cut(s)	99, 195
Hpy8I	GTNNAC	3 cut(s)	281, 890, 1063
Hpy99I	CGWCG	3 cut(s)	50, 53, 1052
HpyAV	CCTTC	4 cut(s)	140, 418, 584, 723
HpyCH4III	ACNGT	2 cut(s)	230, 278
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	5 cut(s)	37, 73, 330, 431, 948
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 1029
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	248
HspAI	GCGC	1 cut(s)	477
KpnI	GGTACC	1 cut(s)	418
KspAI	GTTAAC	1 cut(s)	1063
Kzo9I	GATC	2 cut(s)	177, 685
LmnI	GCTCC	3 cut(s)	217, 275, 715
Lsp1109I	GCAGC	2 cut(s)	43, 355
LweI	GCATC	6 cut(s)	418, 684, 697, 763, 1025, 1041
MaeI	CTAG	2 cut(s)	77, 504
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	4 cut(s)	40, 809, 849, 1074
MalI	GATC	2 cut(s)	179, 687
MboI	GATC	2 cut(s)	177, 685
MboII	GAAGA	8 cut(s)	55, 86, 233, 362, 571, 574, 716, 847
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	3 cut(s)	23, 432, 827
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	857, 902
MmeI	TCCRAC	3 cut(s)	218, 297, 718
MnlI	CCTC	7 cut(s)	71, 245, 734, 853, 926, 965, 994
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	6 cut(s)	26, 107, 263, 522, 669, 1062
MslI	CAYNNNNRTG	1 cut(s)	782
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	5 cut(s)	32, 215, 288, 323, 969
MspR9I	CCNGG	2 cut(s)	723, 969
MvaI	CCWGG	1 cut(s)	723
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	65, 1029
NciI	CCSGG	1 cut(s)	969
NdeII	GATC	2 cut(s)	177, 685
NlaIV	GGNNCC	1 cut(s)	416
NmuCI	GTSAC	3 cut(s)	40, 809, 849
NspI	RCATGY	2 cut(s)	698, 737
PagI	TCATGA	2 cut(s)	783, 799
PciI	ACATGT	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	448, 507, 565
PflMI	CCANNNNNTGG	1 cut(s)	863
PfoI	TCCNGGA	1 cut(s)	967
PkrI	GCNGC	2 cut(s)	58, 370
PleI	GAGTC	2 cut(s)	856, 902
PpsI	GAGTC	2 cut(s)	856, 902
PscI	ACATGT	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	320
RsaI	GTAC	3 cut(s)	416, 488, 659
RsaNI	GTAC	3 cut(s)	415, 487, 658
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	6 cut(s)	26, 107, 263, 522, 669, 1062
SatI	GCNGC	2 cut(s)	57, 369
Sau3AI	GATC	2 cut(s)	177, 685
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	2 cut(s)	857, 902
ScrFI	CCNGG	2 cut(s)	723, 969
SfaNI	GCATC	6 cut(s)	418, 684, 697, 763, 1025, 1041
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	4 cut(s)	134, 569, 910, 1079
SmoI	CTYRAG	4 cut(s)	134, 569, 910, 1079
Sse9I	AATT	3 cut(s)	23, 432, 827
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	77, 504
StyD4I	CCNGG	2 cut(s)	721, 967
TaaI	ACNGT	2 cut(s)	230, 278
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	4 cut(s)	225, 483, 702, 942
TasI	AATT	3 cut(s)	23, 432, 827
TfiI	GAWTC	3 cut(s)	448, 507, 565
Tru1I	TTAA	6 cut(s)	26, 107, 263, 522, 669, 1062
Tru9I	TTAA	6 cut(s)	26, 107, 263, 522, 669, 1062
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	3 cut(s)	40, 809, 849
TseI	GCWGC	2 cut(s)	56, 368
Tsp45I	GTSAC	3 cut(s)	40, 809, 849
TspDTI	ATGAA	4 cut(s)	398, 572, 772, 800
TspGWI	ACGGA	4 cut(s)	79, 227, 247, 319
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	827
XceI	RCATGY	2 cut(s)	698, 737
XmiI	GTMKAC	1 cut(s)	889
XspI	CTAG	2 cut(s)	77, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.