Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003088

Physical Location & Seq

Genomic Coordinates Reverse (-)

28884255 .. 28885485

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1209800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTATGCTTTGGTTGTGAGACTGACATGTGTGCTTGTTTTGGGTTTATGCATGTACCACTCGAAAGATGCAGTTCTTGAAGGAGGAATTCTATTCAACAAGGCCTATGGAATGACTGCTTTCGAGTACCATGGTACTGACCCTAGATTCATCAAGGCCTTCAACCGGGGAATGGCTAACCACTCTACCCTTACCATGAAGAAACTTTTGAGATCTCCAAAGGCTTTGAGGGCCTCACATCCATTGTTGATGTTGGTGGTGGCACCCACGCTGTCAGCATGTTGGAGGAGACATGAGCATGTTGGAGGAGACATGTTTGTAAGTGTTCTAAAGGGAGATGCAATTTTCGTGAAGTGGATATGTCACGAATGGAGTGACGAGCATTATTTGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

133

Amino Acids

15.03

Weight (kDa)

9.3

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_2	PF00891	20 - 74	1.5e-11	O-methyltransferase domain
Methyltransf_2	PF00891	96 - 131	8.7e-07	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54160
fragaria_vesca	FvH4_7g32990
malus_domestica	MD01G1218900.v1.1 MD01G1219000.v1.1 MD01G1228900.v1.1 MD01G1229000.v1.1 MD01G1229100.v1.1 MD07G1209500.v1.1 MD07G1209700.v1.1 MD07G1209800.v1.1 MD07G1300000.v1.1 MD07G1300200.v1.1 MD07G1300300.v1.1 MD07G1300500.v1.1 MD07G1300700.v1.1 MD07G1300900.v1.1 MD07G1301000.v1.1 MD07G1301100.v1.1
prunus_persica	Prupe.2G319700_v2.0.a1 Prupe.2G319700_v2.0.a1
pyrus_communis	pycom01g23690 pycom01g23700 pycom01g23720 pycom07g27240 pycom07g27260 pycom07g27320 pycom07g27330 pycom07g27350
rosa_chinensis	RchiOBHm_Chr1g0382961
rosa_laevigata	RLG00000026145
rosa_roxburghii	Rroxscaffold_4G00277740
rosa_rugosa	Rorug01G0437400
rosa_samantha	Rh1AG462900 Rh1BG419900 Rh1CG433700 Rh1DG451900
rosa_wichuraiana	Rw1G040910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	262
AcsI	RAATTY	2 cut(s)	87, 392
AfaI	GTAC	3 cut(s)	56, 128, 136
AfiI	CCNNNNNNNGG	2 cut(s)	165, 172
AflIII	ACRYGT	2 cut(s)	26, 312
AgsI	TTSAA	4 cut(s)	80, 97, 163, 391
Alw26I	GTCTC	3 cut(s)	13, 283, 303
AoxI	GGCC	3 cut(s)	102, 156, 231
ApoI	RAATTY	2 cut(s)	87, 392
AspS9I	GGNCC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	13, 283, 303
BfaI	CTAG	1 cut(s)	144
BglII	AGATCT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	58, 328
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	130, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 172
BseDI	CCNNGG	2 cut(s)	130, 166
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	165, 172
BseRI	GAGGAG	2 cut(s)	301, 321
BshFI	GGCC	3 cut(s)	104, 158, 233
BshNI	GGYRCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	165, 172
BsmAI	GTCTC	3 cut(s)	13, 283, 303
BsnI	GGCC	3 cut(s)	104, 158, 233
Bsp143I	GATC	1 cut(s)	212
Bsp19I	CCATGG	1 cut(s)	130
BspANI	GGCC	3 cut(s)	104, 158, 233
BspLI	GGNNCC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	130, 166
BssMI	GATC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	130
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	3 cut(s)	13, 283, 303
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNSI	RCATGY	5 cut(s)	30, 55, 282, 302, 316
BstSCI	CCNGG	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	3 cut(s)	104, 158, 233
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	55, 127, 135
CviAII	CATG	8 cut(s)	27, 52, 131, 196, 279, 293, 299, 313
CviJI	RGCY	5 cut(s)	104, 158, 176, 224, 233
CviKI_1	RGCY	5 cut(s)	104, 158, 176, 224, 233
CviQI	GTAC	3 cut(s)	55, 127, 135
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	130
Eco147I	AGGCCT	2 cut(s)	104, 158
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	8 cut(s)	30, 55, 134, 199, 282, 296, 302, 316
FatI	CATG	8 cut(s)	26, 51, 130, 195, 278, 292, 298, 312
FokI	GGATG	1 cut(s)	225
FspBI	CTAG	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	104, 158, 233
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	8 cut(s)	30, 55, 134, 199, 282, 296, 302, 316
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	77, 349, 365
HpyAV	CCTTC	2 cut(s)	74, 169
HpyCH4V	TGCA	3 cut(s)	51, 71, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
Hsp92II	CATG	8 cut(s)	30, 55, 134, 199, 282, 296, 302, 316
Kzo9I	GATC	1 cut(s)	212
LpnPI	CCDG	1 cut(s)	179
LweI	GCATC	2 cut(s)	58, 328
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	362, 374
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	3 cut(s)	87, 342, 392
MmeI	TCCRAC	2 cut(s)	263, 283
MnlI	CCTC	5 cut(s)	77, 222, 244, 279, 299
Mph1103I	ATGCAT	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	8 cut(s)	30, 55, 134, 199, 282, 296, 302, 316
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	2 cut(s)	362, 374
NsiI	ATGCAT	1 cut(s)	53
NspI	RCATGY	5 cut(s)	30, 55, 282, 302, 316
PceI	AGGCCT	2 cut(s)	104, 158
PciI	ACATGT	2 cut(s)	26, 312
PfeI	GAWTC	1 cut(s)	147
PscI	ACATGT	2 cut(s)	26, 312
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	3 cut(s)	56, 128, 136
RsaNI	GTAC	3 cut(s)	55, 127, 135
RseI	CAYNNNNRTG	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	167
SfaNI	GCATC	2 cut(s)	58, 328
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	87, 342, 392
SseBI	AGGCCT	2 cut(s)	104, 158
SspMI	CTAG	1 cut(s)	144
StuI	AGGCCT	2 cut(s)	104, 158
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	130
TaqI	TCGA	2 cut(s)	62, 123
TasI	AATT	3 cut(s)	87, 342, 392
TfiI	GAWTC	1 cut(s)	147
TseFI	GTSAC	2 cut(s)	362, 374
Tsp45I	GTSAC	2 cut(s)	362, 374
TspDTI	ATGAA	2 cut(s)	139, 212
XapI	RAATTY	2 cut(s)	87, 392
XceI	RCATGY	5 cut(s)	30, 55, 282, 302, 316
XspI	CTAG	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.