MD01G1228900.v1.1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
31848473 .. 31851528
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1228900.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGGATTCAACCAGAGAGACTCAGATGACTCCAACCCAAGTCTCCGACGAAGAAGCCAGCCTCTTCGCCATGCAGCTAGCCAGCGCCTCCGTTCTCCCCATGGTGCTCAAGGCAACCATCGAGCTCGACCTCCTTGAGATTATGGCGAAAGCCGGGCCTGGTGCTTTCGTCTCTCCGGCGGACTTAGCTTCGCAGCTGCCGACCAAGAACCCTGACGCGCCCGTCATGCTGGACCGCATGCTGCGCCTCCTGGCCAGCTACTCCATCCTCGCTTACTCCCTCCGCACGCTTCAGGATGGCAAAGTCGAGCGGCTGTACGGCCTAGGCCCTGTCTGTAAGTTCCTGACAACGAATGAGGATGGTGTTTCTATTGCTTCTCTCTGCCTCATGAACCTGGACAAGGTCCCTGTTGAGAGCTGGTACCACCTGAAAGATGCAGTTCTTGAAGGAGGGATTCCCTTCAACAAGGCCTATGGAATGACTGCTTTTGAGTACCATAGCACTGACCCAAGATTCAACAAGGTCTTCAACAGGGCAATGGCTGACATCTCCACCATTACCATGAAGAAAATTCTTGAGACCTACAAGGGCTTTGAGGGCCTCACATCCGTCGTTGATGTTGGTGGTGGCATTGGTGCTGTCATTAACATGATCGTTTCTAAGTACCCTTCGATTAAGGGCATTAACTTCGACTTGCCTCATGTCATCAAAGATGCCCCCCAATATCCTGGTGTGGAGCACATTGGAGGAGACATGTTTGGAACTGTTCCAAAAGGAGATGCAATTTTCATGAAGTGTGTATGTCACGACTGGAGTGACGAGCATTGTCTGAAGATTTTGAAGAACTGCTATGCTGCTCTTCCTGATAACGGCAAGGTGATTCTTGCCGAGTGCATTCTTCAGGTAGCCCCGACCAGCAACCTTGCCACCAAGGTAGTTGCCCATCACGACCTGATCATGTTAACTAACAGCCCTAGCGGAAGAGAGAGAACGGAGGAGGAGTTCGAGGTCTTGGCTAAAGGATCTGGATTCCAAGGCTTCCGAGTCATGTGCCCTGCATTCAATACCTATGTCATTGAACTTCTTAAGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

366

Amino Acids

39.94

Weight (kDa)

5.55

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 24 - 117 2.9e-16 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 140 - 345 4.1e-76 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
Acc65I GGTACC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 420
AccBSI CCGCTC 1 cut(s) 310
AccII CGCG 1 cut(s) 218
AciI CCGC 5 cut(s) 179, 235, 283, 310, 978
AclWI GGATC 1 cut(s) 1030
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 570
AcuI CTGAAG 3 cut(s) 275, 851, 884
AfaI GTAC 4 cut(s) 317, 422, 494, 665
AfiI CCNNNNNNNGG 2 cut(s) 400, 869
AflII CTTAAG 1 cut(s) 1085
AflIII ACRYGT 1 cut(s) 753
AgsI TTSAA 8 cut(s) 9, 446, 463, 517, 529, 841, 1063, 1079
AjnI CCWGG 4 cut(s) 157, 249, 393, 727
AloI GAACNNNNNNTCC 2 cut(s) 986, 1018
AluBI AGCT 6 cut(s) 76, 124, 188, 196, 258, 417
AluI AGCT 6 cut(s) 76, 124, 188, 196, 258, 417
Alw21I GWGCWC 3 cut(s) 108, 126, 741
Alw26I GTCTC 5 cut(s) 11, 46, 175, 572, 744
AlwI GGATC 1 cut(s) 1030
AoxI GGCC 6 cut(s) 155, 252, 319, 325, 468, 598
ApeKI GCWGC 5 cut(s) 73, 193, 196, 241, 854
ApoI RAATTY 1 cut(s) 570
Asp718I GGTACC 1 cut(s) 420
AspA2I CCTAGG 1 cut(s) 322
AspLEI GCGC 3 cut(s) 86, 220, 246
AspS9I GGNCC 5 cut(s) 155, 232, 326, 403, 598
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 889
AsuNHI GCTAGC 1 cut(s) 76
AvaII GGWCC 2 cut(s) 232, 403
AvrII CCTAGG 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 1055
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 420
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 517
Bbv12I GWGCWC 3 cut(s) 108, 126, 741
BbvI GCAGC 5 cut(s) 85, 183, 205, 228, 841
BccI CCATC 5 cut(s) 125, 272, 290, 353, 951
BceAI ACGGC 2 cut(s) 334, 886
BcgI CGANNNNNNTGC 4 cut(s) 670, 704, 1032, 1066
BciT130I CCWGG 4 cut(s) 159, 251, 395, 729
BclI TGATCA 1 cut(s) 954
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 5 cut(s) 11, 46, 175, 572, 744
BfaI CTAG 3 cut(s) 77, 323, 975
BfoI RGCGCY 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 1085
BisI GCNGC 6 cut(s) 74, 194, 197, 242, 311, 855
BlnI CCTAGG 1 cut(s) 322
BlsI GCNGC 6 cut(s) 75, 195, 198, 243, 312, 856
Bme1390I CCNGG 5 cut(s) 154, 159, 251, 395, 729
Bme18I GGWCC 2 cut(s) 232, 403
BmgT120I GGNCC 5 cut(s) 155, 232, 326, 403, 598
BmiI GGNNCC 2 cut(s) 405, 422
BmrFI CCNGG 5 cut(s) 154, 159, 251, 395, 729
BmsI GCATC 3 cut(s) 424, 703, 769
BmtI GCTAGC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 832
BpuEI CTTGAG 3 cut(s) 92, 155, 596
BpuMI CCSGG 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 4 cut(s) 99, 322, 930, 1033
BsaXI ACNNNNNCTCC 2 cut(s) 986, 1016
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 869
Bse1I ACTGG 1 cut(s) 815
Bse3DI GCAATG 1 cut(s) 543
BseBI CCWGG 4 cut(s) 159, 251, 395, 729
BseDI CCNNGG 4 cut(s) 99, 322, 930, 1033
BseGI GGATG 4 cut(s) 264, 301, 364, 605
BseLI CCNNNNNNNGG 2 cut(s) 400, 869
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 815
BseRI GAGGAG 3 cut(s) 762, 1010, 1013
BseSI GKGCMC 1 cut(s) 1055
BseXI GCAGC 5 cut(s) 85, 183, 205, 228, 841
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 6 cut(s) 157, 254, 321, 327, 470, 600
BshNI GGYRCC 1 cut(s) 420
BsiHKAI GWGCWC 3 cut(s) 108, 126, 741
BsiSI CCGG 2 cut(s) 153, 176
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 400, 869
BsmAI GTCTC 5 cut(s) 11, 46, 175, 572, 744
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 2 cut(s) 894, 1058
BsnI GGCC 6 cut(s) 157, 254, 321, 327, 470, 600
Bso31I GGTCTC 1 cut(s) 572
Bsp1286I GDGCHC 4 cut(s) 108, 126, 741, 1055
Bsp143I GATC 3 cut(s) 651, 954, 1022
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 5 cut(s) 179, 235, 283, 310, 978
BspANI GGCC 6 cut(s) 157, 254, 321, 327, 470, 600
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 2 cut(s) 387, 789
BspLI GGNNCC 2 cut(s) 405, 422
BspOI GCTAGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 1030
BspQI GCTCTTC 1 cut(s) 864
BspT107I GGYRCC 1 cut(s) 420
BspTI CTTAAG 1 cut(s) 1085
BspTNI GGTCTC 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 543
BsrI ACTGG 1 cut(s) 815
BssECI CCNNGG 4 cut(s) 99, 322, 930, 1033
BssMI GATC 3 cut(s) 651, 954, 1022
BssT1I CCWWGG 4 cut(s) 99, 322, 930, 1033
Bst2UI CCWGG 4 cut(s) 159, 251, 395, 729
Bst4CI ACNGT 1 cut(s) 766
Bst6I CTCTTC 3 cut(s) 68, 864, 976
BstAFI CTTAAG 1 cut(s) 1085
BstC8I GCNNGC 6 cut(s) 58, 78, 82, 239, 256, 287
BstDEI CTNAG 3 cut(s) 21, 184, 660
BstDSI CCRYGG 1 cut(s) 99
BstENI CCTNNNNNAGG 1 cut(s) 398
BstF5I GGATG 4 cut(s) 264, 301, 364, 605
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 3 cut(s) 86, 220, 246
BstKTI GATC 3 cut(s) 654, 957, 1025
BstMAI GTCTC 5 cut(s) 11, 46, 175, 572, 744
BstMBI GATC 3 cut(s) 651, 954, 1022
BstMWI GCNNNNNNNGC 4 cut(s) 185, 226, 243, 597
BstNI CCWGG 4 cut(s) 159, 251, 395, 729
BstNSI RCATGY 2 cut(s) 241, 757
BstSCI CCNGG 5 cut(s) 152, 157, 249, 393, 727
BstSLI GKGCMC 1 cut(s) 1055
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 5 cut(s) 85, 183, 205, 228, 841
BstV2I GAAGAC 1 cut(s) 517
BstX2I RGATCY 1 cut(s) 1022
BstXI CCANNNNNNTGG 1 cut(s) 728
BstYI RGATCY 1 cut(s) 1022
BsuRI GGCC 6 cut(s) 157, 254, 321, 327, 470, 600
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 4 cut(s) 264, 301, 364, 605
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 6 cut(s) 58, 78, 82, 239, 256, 287
CciI TCATGA 2 cut(s) 387, 789
CfoI GCGC 3 cut(s) 86, 220, 246
Cfr13I GGNCC 5 cut(s) 155, 232, 326, 403, 598
CseI GACGC 1 cut(s) 224
Csp6I GTAC 4 cut(s) 316, 421, 493, 664
CviQI GTAC 4 cut(s) 316, 421, 493, 664
DdeI CTNAG 3 cut(s) 21, 184, 660
DpnI GATC 3 cut(s) 653, 956, 1024
DpnII GATC 3 cut(s) 651, 954, 1022
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 3 cut(s) 68, 864, 976
EarI CTCTTC 3 cut(s) 68, 864, 976
EciI GGCGGA 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 4 cut(s) 99, 322, 930, 1033
Eco147I AGGCCT 1 cut(s) 470
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 2 cut(s) 232, 403
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 3 cut(s) 275, 851, 884
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 398
EcoO109I RGGNCCY 3 cut(s) 326, 403, 598
EcoRII CCWGG 4 cut(s) 157, 249, 393, 727
EcoT14I CCWWGG 4 cut(s) 99, 322, 930, 1033
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 4 cut(s) 99, 322, 930, 1033
Esp3I CGTCTC 1 cut(s) 175
FaqI GGGAC 1 cut(s) 389
FbaI TGATCA 1 cut(s) 954
Fnu4HI GCNGC 6 cut(s) 74, 194, 197, 242, 311, 855
FokI GGATG 4 cut(s) 251, 308, 371, 592
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 6 cut(s) 74, 194, 197, 242, 311, 855
FspBI CTAG 3 cut(s) 77, 323, 975
GlaI GCGC 3 cut(s) 85, 219, 245
GluI GCNGC 6 cut(s) 74, 194, 197, 242, 311, 855
GsuI CTGGAG 1 cut(s) 832
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 6 cut(s) 157, 254, 321, 327, 470, 600
HapII CCGG 2 cut(s) 153, 176
HgaI GACGC 1 cut(s) 224
HhaI GCGC 3 cut(s) 86, 220, 246
Hin6I GCGC 3 cut(s) 84, 218, 244
HinP1I GCGC 3 cut(s) 84, 218, 244
HincII GTYRAC 1 cut(s) 963
HindII GTYRAC 1 cut(s) 963
HinfI GANTC 8 cut(s) 5, 19, 28, 454, 513, 880, 1029, 1044
HpaI GTTAAC 1 cut(s) 963
HpaII CCGG 2 cut(s) 153, 176
HphI GGTGA 1 cut(s) 889
Hpy166II GTNNAC 1 cut(s) 963
Hpy188I TCNGA 4 cut(s) 24, 46, 831, 1043
Hpy8I GTNNAC 1 cut(s) 963
Hpy99I CGWCG 2 cut(s) 50, 614
HpyAV CCTTC 3 cut(s) 440, 469, 678
HpyCH4III ACNGT 1 cut(s) 766
HpyCH4V TGCA 5 cut(s) 73, 437, 782, 894, 1058
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 226, 243, 597
HpyF3I CTNAG 3 cut(s) 21, 184, 660
HspAI GCGC 3 cut(s) 84, 218, 244
KpnI GGTACC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 954
KspAI GTTAAC 1 cut(s) 963
Kzo9I GATC 3 cut(s) 651, 954, 1022
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 1 cut(s) 736
Lsp1109I GCAGC 5 cut(s) 85, 183, 205, 228, 841
LweI GCATC 3 cut(s) 424, 703, 769
MaeI CTAG 3 cut(s) 77, 323, 975
MaeIII GTNAC 2 cut(s) 803, 815
MalI GATC 3 cut(s) 653, 956, 1024
MbiI CCGCTC 1 cut(s) 310
MboI GATC 3 cut(s) 651, 954, 1022
MboII GAAGA 9 cut(s) 55, 62, 517, 577, 844, 851, 853, 890, 993
MflI RGATCY 1 cut(s) 1022
MhlI GDGCHC 4 cut(s) 108, 126, 741, 1055
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 3 cut(s) 570, 783, 1093
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 3 cut(s) 13, 22, 1053
MmeI TCCRAC 2 cut(s) 56, 69
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 5 cut(s) 645, 675, 684, 962, 1086
MslI CAYNNNNRTG 2 cut(s) 560, 647
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 196
MspCI CTTAAG 1 cut(s) 1085
MspI CCGG 2 cut(s) 153, 176
MspR9I CCNGG 5 cut(s) 154, 159, 251, 395, 729
Mva1269I GAATGC 2 cut(s) 894, 1058
MvaI CCWGG 4 cut(s) 159, 251, 395, 729
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 4 cut(s) 185, 226, 243, 597
NciI CCSGG 1 cut(s) 154
NcoI CCATGG 1 cut(s) 99
NdeII GATC 3 cut(s) 651, 954, 1022
NheI GCTAGC 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 405, 422
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 2 cut(s) 803, 815
NspI RCATGY 2 cut(s) 241, 757
PaeI GCATGC 1 cut(s) 241
PagI TCATGA 2 cut(s) 387, 789
PceI AGGCCT 1 cut(s) 470
PciI ACATGT 1 cut(s) 753
PciSI GCTCTTC 1 cut(s) 864
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 2 cut(s) 894, 1058
PfeI GAWTC 5 cut(s) 5, 454, 513, 880, 1029
PflFI GACNNNGTC 1 cut(s) 401
PkrI GCNGC 6 cut(s) 75, 195, 198, 243, 312, 856
PleI GAGTC 3 cut(s) 13, 22, 1052
PpsI GAGTC 3 cut(s) 13, 22, 1052
PpuMI RGGWCCY 1 cut(s) 403
PscI ACATGT 1 cut(s) 753
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 4 cut(s) 157, 249, 393, 727
PspGI CCWGG 4 cut(s) 157, 249, 393, 727
PspN4I GGNNCC 2 cut(s) 405, 422
PspPI GGNCC 5 cut(s) 155, 232, 326, 403, 598
PspPPI RGGWCCY 1 cut(s) 403
PsuI RGATCY 1 cut(s) 1022
PsyI GACNNNGTC 1 cut(s) 401
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 4 cut(s) 317, 422, 494, 665
RsaNI GTAC 4 cut(s) 316, 421, 493, 664
RseI CAYNNNNRTG 2 cut(s) 560, 647
SacI GAGCTC 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 5 cut(s) 645, 675, 684, 962, 1086
SatI GCNGC 6 cut(s) 74, 194, 197, 242, 311, 855
Sau3AI GATC 3 cut(s) 651, 954, 1022
Sau96I GGNCC 5 cut(s) 155, 232, 326, 403, 598
SchI GAGTC 3 cut(s) 13, 22, 1053
ScrFI CCNGG 5 cut(s) 154, 159, 251, 395, 729
SduI GDGCHC 4 cut(s) 108, 126, 741, 1055
SfaNI GCATC 3 cut(s) 424, 703, 769
SinI GGWCC 2 cut(s) 232, 403
SmiMI CAYNNNNRTG 2 cut(s) 560, 647
SmlI CTYRAG 4 cut(s) 107, 134, 575, 1085
SmoI CTYRAG 4 cut(s) 107, 134, 575, 1085
SphI GCATGC 1 cut(s) 241
Sse9I AATT 3 cut(s) 570, 783, 1093
SseBI AGGCCT 1 cut(s) 470
SsiI CCGC 5 cut(s) 179, 235, 283, 310, 978
SspMI CTAG 3 cut(s) 77, 323, 975
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 470
StyD4I CCNGG 5 cut(s) 152, 157, 249, 393, 727
StyI CCWWGG 4 cut(s) 99, 322, 930, 1033
TaaI ACNGT 1 cut(s) 766
TaqI TCGA 6 cut(s) 120, 126, 306, 671, 690, 1005
TasI AATT 3 cut(s) 570, 783, 1093
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 5 cut(s) 5, 454, 513, 880, 1029
Tru1I TTAA 5 cut(s) 645, 675, 684, 962, 1086
Tru9I TTAA 5 cut(s) 645, 675, 684, 962, 1086
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 2 cut(s) 803, 815
TseI GCWGC 5 cut(s) 73, 193, 196, 241, 854
Tsp45I GTSAC 2 cut(s) 803, 815
TspDTI ATGAA 4 cut(s) 404, 578, 778, 806
TspGWI ACGGA 3 cut(s) 79, 598, 1007
TspRI CASTG 1 cut(s) 508
Tth111I GACNNNGTC 1 cut(s) 401
Vha464I CTTAAG 1 cut(s) 1085
VpaK11BI GGWCC 2 cut(s) 232, 403
XagI CCTNNNNNAGG 1 cut(s) 398
XapI RAATTY 1 cut(s) 570
XceI RCATGY 2 cut(s) 241, 757
XmaJI CCTAGG 1 cut(s) 322
XspI CTAG 3 cut(s) 77, 323, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.