Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003088

Physical Location & Seq

Genomic Coordinates Reverse (-)

35889920 .. 35891934

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1300000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACTAATTTTGAGTATCATGGCACTGACCCTAGATTCAACAAGGTCTTTAACAGGGCAATGGCTGACCACTCTATCATTGCCATGAAGAAACTTCTTGTGACCTATAAGGGCTTTGAGGGCCTCACATCTGTCGTTGATGTTGGTGGTGGCACCGGCAGTGTTATTCACATGATTGTCTCTAAGTACCCTTCGTTTAAGGGTATTAACTTCGACTTGCCTCATGTCATCAAAGATGCTCCCCAATATCCTGGTGTGGAGCATGTTGGAGGAGACATGTTTAACTGCTATGCTACGCTCCCCGACAATGGGAAAGTGATTCTTGTTGACATCATTATTCCGGTATCTCCAAACAGCAGCCTTGCCACCAAGCTAGCTAACCATGTCGACATGATCATGTTAGCTCACAACCCCGGCGGAAAAGAGAGGACGGAGAAGGAGTTTGAGGCCTTGGTTAAGGGATCTGGATTCCAAGGCTTCCGCGTCATGTGCTCCGCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

168

Amino Acids

18.25

Weight (kDa)

7.05

Isoelectric Point (pI)

13.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_2	PF00891	2 - 94	3.7e-30	O-methyltransferase domain
Methyltransf_2	PF00891	95 - 158	2.9e-13	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54160
fragaria_vesca	FvH4_7g32990
malus_domestica	MD01G1218900.v1.1 MD01G1219000.v1.1 MD01G1228900.v1.1 MD01G1229000.v1.1 MD01G1229100.v1.1 MD07G1209500.v1.1 MD07G1209700.v1.1 MD07G1209800.v1.1 MD07G1300000.v1.1 MD07G1300200.v1.1 MD07G1300300.v1.1 MD07G1300500.v1.1 MD07G1300700.v1.1 MD07G1300900.v1.1 MD07G1301000.v1.1 MD07G1301100.v1.1
prunus_persica	Prupe.2G319700_v2.0.a1 Prupe.2G319700_v2.0.a1
pyrus_communis	pycom01g23690 pycom01g23700 pycom01g23720 pycom07g27240 pycom07g27260 pycom07g27320 pycom07g27330 pycom07g27350
rosa_chinensis	RchiOBHm_Chr1g0382961
rosa_laevigata	RLG00000026145
rosa_roxburghii	Rroxscaffold_4G00277740
rosa_rugosa	Rorug01G0437400
rosa_samantha	Rh1AG462900 Rh1BG419900 Rh1CG433700 Rh1DG451900
rosa_wichuraiana	Rw1G040910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	1 cut(s)	483
AciI	CCGC	3 cut(s)	417, 481, 495
AclWI	GGATC	1 cut(s)	469
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	308, 309
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	373, 377, 404
AluI	AGCT	3 cut(s)	373, 377, 404
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	2 cut(s)	184, 267
AlwI	GGATC	1 cut(s)	469
AoxI	GGCC	2 cut(s)	121, 447
ApeKI	GCWGC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	121
AsuC2I	CCSGG	1 cut(s)	414
AsuNHI	GCTAGC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	494
BbvI	GCAGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	184, 267
BfaI	CTAG	3 cut(s)	33, 374, 502
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	2 cut(s)	252, 414
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	252, 414
BmsI	GCATC	1 cut(s)	226
BmtI	GCTAGC	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	412, 450, 472
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 309
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	2 cut(s)	66, 78
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	412, 450, 472
BseLI	CCNNNNNNNGG	2 cut(s)	308, 309
BseMI	GCAATG	2 cut(s)	66, 78
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	123, 449
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	494
BsiSI	CCGG	3 cut(s)	156, 341, 414
BslI	CCNNNNNNNGG	2 cut(s)	308, 309
BsmAI	GTCTC	2 cut(s)	184, 267
BsnI	GGCC	2 cut(s)	123, 449
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	393, 461
BspACI	CCGC	3 cut(s)	417, 481, 495
BspANI	GGCC	2 cut(s)	123, 449
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	66, 78
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	412, 450, 472
BssMI	GATC	2 cut(s)	393, 461
BssT1I	CCWWGG	2 cut(s)	450, 472
Bst2UI	CCWGG	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	483
BstKTI	GATC	2 cut(s)	396, 464
BstMAI	GTCTC	2 cut(s)	184, 267
BstMBI	GATC	2 cut(s)	393, 461
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 489
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	2 cut(s)	266, 280
BstSCI	CCNGG	2 cut(s)	250, 412
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	461
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	123, 449
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	24, 166
Cac8I	GCNNGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	187
CviJI	RGCY	9 cut(s)	65, 114, 123, 360, 373, 377, 404, 449, 477
CviKI_1	RGCY	9 cut(s)	65, 114, 123, 360, 373, 377, 404, 449, 477
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	2 cut(s)	395, 463
DpnII	GATC	2 cut(s)	393, 461
EciI	GGCGGA	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	450, 472
Eco147I	AGGCCT	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	450, 472
ErhI	CCWWGG	2 cut(s)	450, 472
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FbaI	TGATCA	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	358
FspBI	CTAG	3 cut(s)	33, 374, 502
GluI	GCNGC	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	123, 449
HapII	CCGG	3 cut(s)	156, 341, 414
HgaI	GACGC	1 cut(s)	472
HincII	GTYRAC	2 cut(s)	328, 388
HindII	GTYRAC	2 cut(s)	328, 388
HinfI	GANTC	3 cut(s)	36, 319, 468
HpaII	CCGG	3 cut(s)	156, 341, 414
Hpy166II	GTNNAC	2 cut(s)	328, 388
Hpy188III	TCNNGA	1 cut(s)	465
Hpy8I	GTNNAC	2 cut(s)	328, 388
HpyAV	CCTTC	2 cut(s)	201, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 489
HpyF3I	CTNAG	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	393, 461
LmnI	GCTCC	4 cut(s)	244, 259, 303, 497
LpnPI	CCDG	7 cut(s)	40, 169, 237, 264, 354, 427, 450
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	33, 374, 502
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	395, 463
MboI	GATC	2 cut(s)	393, 461
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	1 cut(s)	7
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	6 cut(s)	112, 134, 231, 263, 420, 439
MseI	TTAA	5 cut(s)	51, 198, 207, 282, 456
MslI	CAYNNNNRTG	2 cut(s)	83, 395
MspI	CCGG	3 cut(s)	156, 341, 414
MspR9I	CCNGG	2 cut(s)	252, 414
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	120, 489
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	2 cut(s)	393, 461
NheI	GCTAGC	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	2 cut(s)	266, 280
PceI	AGGCCT	1 cut(s)	449
PciI	ACATGT	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	36, 319, 468
PkrI	GCNGC	1 cut(s)	359
PscI	ACATGT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	83, 395
SalI	GTCGAC	1 cut(s)	386
SaqAI	TTAA	5 cut(s)	51, 198, 207, 282, 456
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	2 cut(s)	393, 461
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	252, 414
SduI	GDGCHC	1 cut(s)	494
SetI	ASST	5 cut(s)	48, 107, 375, 379, 406
SfaNI	GCATC	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	83, 395
Sse9I	AATT	1 cut(s)	7
SseBI	AGGCCT	1 cut(s)	449
SsiI	CCGC	3 cut(s)	417, 481, 495
SspMI	CTAG	3 cut(s)	33, 374, 502
StuI	AGGCCT	1 cut(s)	449
StyD4I	CCNGG	2 cut(s)	250, 412
StyI	CCWWGG	2 cut(s)	450, 472
TaqI	TCGA	2 cut(s)	213, 387
TasI	AATT	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	36, 319, 468
Tru1I	TTAA	5 cut(s)	51, 198, 207, 282, 456
Tru9I	TTAA	5 cut(s)	51, 198, 207, 282, 456
TscAI	CASTG	2 cut(s)	31, 166
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	357
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	2 cut(s)	31, 166
XceI	RCATGY	2 cut(s)	266, 280
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	3 cut(s)	33, 374, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.