pycom01g23700
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
20953046 .. 20955451
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23700.1

Sequence Viewer

Length: 972 bp
ATGGGTTCGACCCCAGACACTCAGATCACCCCAACCCAAGTCTCCGACGAAGAAGCCAACCTCTTCGCCATGCAGCTAGCCAGCGGCTCCATTCTCCCCATGGTGCTCAAGGCGGCCATCGAGCTCGACCTCCTCGAGGTCATGGCAAAAGCCGGGCCTGGCGCTTTTGTTTCTCCGGCTGACATAGCTTCGCAGCTGCCGACCAAGAACCCCGACGCCCCCGTCATGCTGGACCGCATACTGCGCCTCCTGGCCAGCTACTCCATCCTCACTTACTCCCTCCGCACACTTCCCGACGGCAAAGTCCAGCGGCTGTACGGCCTCGGCCCCGTCTGCAAGTTCTTGACAAAGAACGAGGATGGTGCTTCCATTGGTTCTCTGTGCCTCATGAATCAGGACAAGGTCCTTATGGAGAGCTGGTACCACTTGAAAGAGTCAGTCCTTGAAGGAGGTATCCCATTCAACAAGGCCTATGGAATGACCGCTTTTGAGTACCATGGCACTGACCCAAGATTCAACAAGGTCTTCAACAAGGGAATGGCTGACCACTCTACCATTACCATGAAGAAACTTCTTGAGATCTACAATGGCTTTGAGGGCCTCACATCCATCGTTGACGTTGGTGGTGGCACCGGCGCTGTCCTTAACATGATCGTCTCTAAATACCCTTCGATTAAGGGCATTAACTTCGACTTGCCTCATGTCATTGAAGATGCTCCCCAATATCCTGGTGTGGAGCATGTTGGAGGAGACATGTTTGTAAGTGTTCCAAAGGGAGATGCAATTTTCATGAAGTGGATATGCCACGACTGGAGTGACGAGCATTGCTTGAAATTTTTGAAGAACTGCTATGCTGCGCTTCCAGACAATGGGAAAGTAATTGTTGCTGAGTGCATTCTTCCGATAGCTCCGGACAGTAGCCTTGCCACCAAGGGAGTTGTCCATATCGACGCGATCGATGTTAGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

324

Amino Acids

34.99

Weight (kDa)

5.16

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 24 - 117 3.7e-17 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 140 - 313 1.4e-68 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 221, 302
AbsI CCTCGAGG 1 cut(s) 134
Acc65I GGTACC 1 cut(s) 420
AccB1I GGYRCC 2 cut(s) 420, 629
AccB7I CCANNNNNTGG 1 cut(s) 869
AccII CGCG 1 cut(s) 953
AccIII TCCGGA 1 cut(s) 910
AciI CCGC 6 cut(s) 84, 113, 235, 283, 310, 483
AcoI YGGCCR 2 cut(s) 114, 252
AcsI RAATTY 1 cut(s) 833
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 3 cut(s) 317, 422, 494
AfiI CCNNNNNNNGG 2 cut(s) 136, 869
AflIII ACRYGT 1 cut(s) 753
AgsI TTSAA 8 cut(s) 430, 446, 463, 517, 529, 710, 832, 841
AjnI CCWGG 3 cut(s) 157, 249, 727
AluBI AGCT 8 cut(s) 76, 124, 188, 196, 258, 417, 908, 966
AluI AGCT 8 cut(s) 76, 124, 188, 196, 258, 417, 908, 966
Alw21I GWGCWC 2 cut(s) 108, 126
Alw26I GTCTC 3 cut(s) 46, 661, 744
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 910
AoxI GGCC 7 cut(s) 114, 155, 252, 319, 325, 468, 598
ApeKI GCWGC 4 cut(s) 73, 193, 196, 854
ApoI RAATTY 1 cut(s) 833
Asp718I GGTACC 1 cut(s) 420
AspLEI GCGC 4 cut(s) 164, 246, 638, 859
AspS9I GGNCC 5 cut(s) 155, 232, 326, 403, 598
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 19
AsuNHI GCTAGC 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 2 cut(s) 232, 403
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 2 cut(s) 420, 629
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 517
Bbv12I GWGCWC 2 cut(s) 108, 126
BbvI GCAGC 4 cut(s) 85, 183, 205, 841
BccI CCATC 4 cut(s) 125, 272, 353, 617
BceAI ACGGC 2 cut(s) 313, 334
BcgI CGANNNNNNTGC 4 cut(s) 344, 378, 670, 704
BciT130I CCWGG 3 cut(s) 159, 251, 729
BciVI GTATCC 1 cut(s) 464
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 3 cut(s) 46, 661, 744
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 2 cut(s) 165, 639
BfuI GTATCC 1 cut(s) 464
BglII AGATCT 1 cut(s) 579
BisI GCNGC 7 cut(s) 74, 85, 114, 194, 197, 311, 855
BlsI GCNGC 7 cut(s) 75, 86, 115, 195, 198, 312, 856
Bme1390I CCNGG 4 cut(s) 154, 159, 251, 729
Bme18I GGWCC 2 cut(s) 232, 403
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 5 cut(s) 155, 232, 326, 403, 598
BmiI GGNNCC 4 cut(s) 88, 328, 422, 631
BmrFI CCNGG 4 cut(s) 154, 159, 251, 729
BmsI GCATC 2 cut(s) 703, 769
BmtI GCTAGC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 832
BpuEI CTTGAG 2 cut(s) 92, 596
BpuMI CCSGG 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 957
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 4 cut(s) 99, 322, 496, 930
BsaWI WCCGGW 1 cut(s) 910
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 869
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 1 cut(s) 815
Bse3DI GCAATG 1 cut(s) 823
BseAI TCCGGA 1 cut(s) 910
BseBI CCWGG 3 cut(s) 159, 251, 729
BseCI ATCGAT 1 cut(s) 957
BseDI CCNNGG 4 cut(s) 99, 322, 496, 930
BseGI GGATG 3 cut(s) 264, 364, 605
BseLI CCNNNNNNNGG 2 cut(s) 136, 869
BseMI GCAATG 1 cut(s) 823
BseMII CTCAG 2 cut(s) 35, 879
BseNI ACTGG 1 cut(s) 815
BseRI GAGGAG 2 cut(s) 122, 762
BseXI GCAGC 4 cut(s) 85, 183, 205, 841
Bsh1236I CGCG 1 cut(s) 953
Bsh1285I CGRYCG 1 cut(s) 957
BshFI GGCC 7 cut(s) 116, 157, 254, 321, 327, 470, 600
BshNI GGYRCC 2 cut(s) 420, 629
BshVI ATCGAT 1 cut(s) 957
BsiEI CGRYCG 1 cut(s) 957
BsiHKAI GWGCWC 2 cut(s) 108, 126
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 4 cut(s) 153, 176, 633, 911
BslI CCNNNNNNNGG 2 cut(s) 136, 869
BsmAI GTCTC 3 cut(s) 46, 661, 744
BsmBI CGTCTC 1 cut(s) 661
BsmI GAATGC 1 cut(s) 894
BsnI GGCC 7 cut(s) 116, 157, 254, 321, 327, 470, 600
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 108, 126
Bsp13I TCCGGA 1 cut(s) 910
Bsp143I GATC 4 cut(s) 24, 579, 651, 954
Bsp19I CCATGG 2 cut(s) 99, 496
BspACI CCGC 6 cut(s) 84, 113, 235, 283, 310, 483
BspANI GGCC 7 cut(s) 116, 157, 254, 321, 327, 470, 600
BspCNI CTCAG 2 cut(s) 34, 880
BspDI ATCGAT 1 cut(s) 957
BspEI TCCGGA 1 cut(s) 910
BspFNI CGCG 1 cut(s) 953
BspHI TCATGA 2 cut(s) 387, 789
BspLI GGNNCC 4 cut(s) 88, 328, 422, 631
BspOI GCTAGC 1 cut(s) 80
BspT107I GGYRCC 2 cut(s) 420, 629
BsrDI GCAATG 1 cut(s) 823
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 1 cut(s) 815
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 99, 322, 496, 930
BssMI GATC 4 cut(s) 24, 579, 651, 954
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 3 cut(s) 99, 496, 930
Bst2UI CCWGG 3 cut(s) 159, 251, 729
Bst4CI ACNGT 1 cut(s) 917
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 78, 82, 256
BstDEI CTNAG 2 cut(s) 21, 888
BstDSI CCRYGG 2 cut(s) 99, 496
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 3 cut(s) 264, 364, 605
BstFNI CGCG 1 cut(s) 953
BstH2I RGCGCY 2 cut(s) 165, 639
BstHHI GCGC 4 cut(s) 164, 246, 638, 859
BstKTI GATC 4 cut(s) 27, 582, 654, 957
BstMAI GTCTC 3 cut(s) 46, 661, 744
BstMBI GATC 4 cut(s) 24, 579, 651, 954
BstMCI CGRYCG 1 cut(s) 957
BstMWI GCNNNNNNNGC 4 cut(s) 185, 243, 333, 597
BstNI CCWGG 3 cut(s) 159, 251, 729
BstNSI RCATGY 2 cut(s) 743, 757
BstSCI CCNGG 4 cut(s) 152, 157, 249, 727
BstUI CGCG 1 cut(s) 953
BstV1I GCAGC 4 cut(s) 85, 183, 205, 841
BstV2I GAAGAC 1 cut(s) 517
BstX2I RGATCY 1 cut(s) 579
BstXI CCANNNNNNTGG 1 cut(s) 728
BstYI RGATCY 1 cut(s) 579
Bsu15I ATCGAT 1 cut(s) 957
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 7 cut(s) 116, 157, 254, 321, 327, 470, 600
BsuTUI ATCGAT 1 cut(s) 957
BtgI CCRYGG 2 cut(s) 99, 496
BtsCI GGATG 3 cut(s) 264, 364, 605
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 3 cut(s) 78, 82, 256
CaiI CAGNNNCTG 1 cut(s) 313
CciI TCATGA 2 cut(s) 387, 789
CfoI GCGC 4 cut(s) 164, 246, 638, 859
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 5 cut(s) 155, 232, 326, 403, 598
ClaI ATCGAT 1 cut(s) 957
CseI GACGC 2 cut(s) 224, 959
Csp6I GTAC 3 cut(s) 316, 421, 493
CviQI GTAC 3 cut(s) 316, 421, 493
DdeI CTNAG 2 cut(s) 21, 888
DpnI GATC 4 cut(s) 26, 581, 653, 956
DpnII GATC 4 cut(s) 24, 579, 651, 954
DrdI GACNNNNNNGTC 2 cut(s) 221, 302
DseDI GACNNNNNNGTC 2 cut(s) 221, 302
EaeI YGGCCR 2 cut(s) 114, 252
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 3 cut(s) 99, 496, 930
Eco147I AGGCCT 1 cut(s) 470
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 232, 403
Eco53kI GAGCTC 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoO109I RGGNCCY 2 cut(s) 403, 598
EcoRII CCWGG 3 cut(s) 157, 249, 727
EcoT14I CCWWGG 3 cut(s) 99, 496, 930
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 3 cut(s) 99, 496, 930
Esp3I CGTCTC 1 cut(s) 661
Fnu4HI GCNGC 7 cut(s) 74, 85, 114, 194, 197, 311, 855
FokI GGATG 3 cut(s) 251, 371, 592
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 7 cut(s) 74, 85, 114, 194, 197, 311, 855
FspBI CTAG 1 cut(s) 77
GlaI GCGC 4 cut(s) 163, 245, 637, 858
GluI GCNGC 7 cut(s) 74, 85, 114, 194, 197, 311, 855
GsuI CTGGAG 1 cut(s) 832
HaeII RGCGCY 2 cut(s) 165, 639
HaeIII GGCC 7 cut(s) 116, 157, 254, 321, 327, 470, 600
HapII CCGG 4 cut(s) 153, 176, 633, 911
HgaI GACGC 2 cut(s) 224, 959
HhaI GCGC 4 cut(s) 164, 246, 638, 859
Hin1I GRCGYC 1 cut(s) 216
Hin6I GCGC 4 cut(s) 162, 244, 636, 857
HinP1I GCGC 4 cut(s) 162, 244, 636, 857
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 3 cut(s) 391, 434, 513
HpaII CCGG 4 cut(s) 153, 176, 633, 911
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 3 cut(s) 24, 46, 903
Hpy188III TCNNGA 8 cut(s) 293, 343, 388, 395, 575, 790, 863, 911
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 4 cut(s) 50, 218, 299, 953
HpyAV CCTTC 2 cut(s) 440, 678
HpyCH4III ACNGT 1 cut(s) 917
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 4 cut(s) 73, 336, 782, 894
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 243, 333, 597
HpyF3I CTNAG 2 cut(s) 21, 888
HpySE526I ACGT 1 cut(s) 618
Hsp92I GRCGYC 1 cut(s) 216
HspAI GCGC 4 cut(s) 162, 244, 636, 857
Kpn2I TCCGGA 1 cut(s) 910
KpnI GGTACC 1 cut(s) 424
Kzo9I GATC 4 cut(s) 24, 579, 651, 954
LmnI GCTCC 4 cut(s) 92, 721, 736, 913
Lsp1109I GCAGC 4 cut(s) 85, 183, 205, 841
LweI GCATC 2 cut(s) 703, 769
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 815
MalI GATC 4 cut(s) 26, 581, 653, 956
MboI GATC 4 cut(s) 24, 579, 651, 954
MboII GAAGA 7 cut(s) 55, 62, 517, 577, 722, 853, 890
MflI RGATCY 1 cut(s) 579
MhlI GDGCHC 2 cut(s) 108, 126
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 3 cut(s) 783, 833, 879
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 2 cut(s) 69, 724
Mox20I TGGCCA 1 cut(s) 254
MroI TCCGGA 1 cut(s) 910
MscI TGGCCA 1 cut(s) 254
MseI TTAA 3 cut(s) 645, 675, 684
MslI CAYNNNNRTG 1 cut(s) 560
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 3 cut(s) 84, 196, 310
MspI CCGG 4 cut(s) 153, 176, 633, 911
MspR9I CCNGG 4 cut(s) 154, 159, 251, 729
Mva1269I GAATGC 1 cut(s) 894
MvaI CCWGG 3 cut(s) 159, 251, 729
MvnI CGCG 1 cut(s) 953
MwoI GCNNNNNNNGC 4 cut(s) 185, 243, 333, 597
NciI CCSGG 1 cut(s) 154
NcoI CCATGG 2 cut(s) 99, 496
NdeII GATC 4 cut(s) 24, 579, 651, 954
NheI GCTAGC 1 cut(s) 76
NlaIV GGNNCC 4 cut(s) 88, 328, 422, 631
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 815
NspI RCATGY 2 cut(s) 743, 757
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 2 cut(s) 387, 789
PceI AGGCCT 1 cut(s) 470
PciI ACATGT 1 cut(s) 753
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 197, 954
PctI GAATGC 1 cut(s) 894
PfeI GAWTC 2 cut(s) 391, 513
PflFI GACNNNGTC 1 cut(s) 401
PflMI CCANNNNNTGG 1 cut(s) 869
PkrI GCNGC 7 cut(s) 75, 86, 115, 195, 198, 312, 856
Ple19I CGATCG 1 cut(s) 957
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 403
PscI ACATGT 1 cut(s) 753
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 3 cut(s) 157, 249, 727
PspGI CCWGG 3 cut(s) 157, 249, 727
PspN4I GGNNCC 4 cut(s) 88, 328, 422, 631
PspPI GGNCC 5 cut(s) 155, 232, 326, 403, 598
PspPPI RGGWCCY 1 cut(s) 403
PspXI VCTCGAGB 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 579
PsyI GACNNNGTC 1 cut(s) 401
PvuI CGATCG 1 cut(s) 957
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 3 cut(s) 317, 422, 494
RsaNI GTAC 3 cut(s) 316, 421, 493
RseI CAYNNNNRTG 1 cut(s) 560
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 645, 675, 684
SatI GCNGC 7 cut(s) 74, 85, 114, 194, 197, 311, 855
Sau3AI GATC 4 cut(s) 24, 579, 651, 954
Sau96I GGNCC 5 cut(s) 155, 232, 326, 403, 598
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 4 cut(s) 154, 159, 251, 729
SduI GDGCHC 2 cut(s) 108, 126
SfaNI GCATC 2 cut(s) 703, 769
Sfr274I CTCGAG 1 cut(s) 134
SgrAI CRCCGGYG 1 cut(s) 632
SinI GGWCC 2 cut(s) 232, 403
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 3 cut(s) 107, 134, 575
SmoI CTYRAG 3 cut(s) 107, 134, 575
Sse9I AATT 3 cut(s) 783, 833, 879
SseBI AGGCCT 1 cut(s) 470
SsiI CCGC 6 cut(s) 84, 113, 235, 283, 310, 483
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 470
StyD4I CCNGG 4 cut(s) 152, 157, 249, 727
StyI CCWWGG 3 cut(s) 99, 496, 930
TaaI ACNGT 1 cut(s) 917
TaiI ACGT 1 cut(s) 621
TaqI TCGA 8 cut(s) 8, 120, 126, 135, 671, 690, 948, 957
TasI AATT 3 cut(s) 783, 833, 879
TauI GCSGC 3 cut(s) 87, 116, 313
TfiI GAWTC 2 cut(s) 391, 513
Tru1I TTAA 3 cut(s) 645, 675, 684
Tru9I TTAA 3 cut(s) 645, 675, 684
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 815
TseI GCWGC 4 cut(s) 73, 193, 196, 854
Tsp45I GTSAC 1 cut(s) 815
TspDTI ATGAA 4 cut(s) 404, 578, 778, 806
TspRI CASTG 1 cut(s) 508
Tth111I GACNNNGTC 1 cut(s) 401
Van91I CCANNNNNTGG 1 cut(s) 869
VpaK11BI GGWCC 2 cut(s) 232, 403
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 833
XceI RCATGY 2 cut(s) 743, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.