pycom01g23690
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
20944575 .. 20948127
3553 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23690.2

Sequence Viewer

Length: 1134 bp
ATGGGTTCAATTGGAGAGACTCAGATGACTCCAACCCAAGTCTCCGACGAAGAAGCCAGCCTCTTCGCCATGCAGCTAGCCAGCGTCTCCGTTCTCCCCATGGTGCTCAAGGCAGCCATCGAGCTCGACCTCCTTGAGATTATGGCGAAAGCCGGGCCTGGCGTTTTCGTCTCTCCGGCGGACTTAGCTTTGCAGTTGCCGACCAAGAACCCTGACGCCCCCGTCATGCTAGACCGCATGCTGCGCCTCCTGGCCAGCTACTCCATCCTCACTTACTCCCTCCGCACGCTTCAGGATGGCAAAGTCGAGCGGCTGTACGGCCTCGGCCCTGTCTGCAAGTTCCTGACAACGAATGAGGATGGTGTTTCTATTGCTTCTCTCTGCCTCATGAACCTGGACAAGGTCCCCGTTGAGAGCTGGTACCACCTGAAAGATGCAGTTCTTGAAGGAGGGATTCCCTTCAACAAGGCCTATGGAATGACTGCTTTTGAGTACCATGGCACTGACCCAAGATTCAACAAGGTCTTCAACAGGGCAATGGCTGACATCTCCACCATTACCATGAAGAAAATTCTTGAGACCTACAAGGGCTTTGAGGGCCTCACATCCGTTGTTGATGTTGGTGGTGGCACCGGTGCTGTTGTTAACATGATCGTCTCCAAGTACCCTTCGATTAAGGGCATTAACTTCGACTTGCCTCATGTCATCAAAGATGCCCCCCAATATCCTGGTAGATTCTTCATTTACAATTATGGTTGTAGCTCAATTGATCATGCTTGGATGGTTAATATATATGGAGCTAATATTAAAATTGTGTTTGCAATCTTACAGTGTGTATGTCACGACTGGAGTGACGAGCATTGTTTGAAGATTTTGAAGAACTGCTATGCTGCGCTTCCTGATAACGGCAAGGTGATTCTTGCGGAGTGCATTCTTCAGGTAGCCCCGACCATCAACCTTGCCACCAAGGTAGTTGCCCATCACGACCTGATCATGTTAACTAACAGCCCTAGCGGAAAAGAGAGAACGGAGGAGGAGTTCGAGGCCTTGGCTAAAGGATCTGGTTTCCAAGGCTTCCGAGTCACGTGCCCTGCATTCAATACCTATGTCATTGAACTTCTAAAGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

378

Amino Acids

41.38

Weight (kDa)

5.79

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
Acc65I GGTACC 1 cut(s) 420
AccB1I GGYRCC 2 cut(s) 420, 629
AccBSI CCGCTC 1 cut(s) 310
AciI CCGC 6 cut(s) 179, 235, 283, 310, 923, 1014
AclWI GGATC 1 cut(s) 1066
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 570
AcuI CTGAAG 2 cut(s) 275, 920
AcvI CACGTG 1 cut(s) 1086
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 4 cut(s) 317, 422, 494, 665
AfiI CCNNNNNNNGG 2 cut(s) 400, 905
AgeI ACCGGT 1 cut(s) 632
AgsI TTSAA 9 cut(s) 9, 446, 463, 517, 529, 868, 877, 1099, 1115
AjnI CCWGG 4 cut(s) 157, 249, 393, 727
AloI GAACNNNNNNTCC 2 cut(s) 1022, 1054
AluBI AGCT 7 cut(s) 76, 124, 188, 258, 417, 762, 800
AluI AGCT 7 cut(s) 76, 124, 188, 258, 417, 762, 800
Alw21I GWGCWC 2 cut(s) 108, 126
Alw26I GTCTC 6 cut(s) 11, 46, 91, 175, 572, 661
AlwI GGATC 1 cut(s) 1066
AoxI GGCC 7 cut(s) 155, 252, 319, 325, 468, 598, 1044
ApeKI GCWGC 4 cut(s) 73, 113, 241, 890
ApoI RAATTY 1 cut(s) 570
AsiGI ACCGGT 1 cut(s) 632
Asp718I GGTACC 1 cut(s) 420
AspLEI GCGC 2 cut(s) 246, 895
AspS9I GGNCC 4 cut(s) 155, 326, 403, 598
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 925
AsuNHI GCTAGC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 1091
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 2 cut(s) 420, 629
BanII GRGCYC 1 cut(s) 126
BbrPI CACGTG 1 cut(s) 1086
BbsI GAAGAC 1 cut(s) 517
Bbv12I GWGCWC 2 cut(s) 108, 126
BbvI GCAGC 4 cut(s) 85, 125, 228, 877
BccI CCATC 7 cut(s) 125, 272, 290, 353, 775, 959, 987
BceAI ACGGC 2 cut(s) 334, 922
BcgI CGANNNNNNTGC 4 cut(s) 670, 704, 1068, 1102
BciT130I CCWGG 4 cut(s) 159, 251, 395, 729
BclI TGATCA 2 cut(s) 769, 990
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 6 cut(s) 11, 46, 91, 175, 572, 661
BfaI CTAG 3 cut(s) 77, 230, 1011
BisI GCNGC 5 cut(s) 74, 114, 242, 311, 891
BlsI GCNGC 5 cut(s) 75, 115, 243, 312, 892
Bme1390I CCNGG 5 cut(s) 154, 159, 251, 395, 729
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 4 cut(s) 155, 326, 403, 598
BmiI GGNNCC 3 cut(s) 405, 422, 631
BmrFI CCNGG 5 cut(s) 154, 159, 251, 395, 729
BmsI GCATC 2 cut(s) 424, 703
BmtI GCTAGC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 868
BpuEI CTTGAG 3 cut(s) 92, 155, 596
BpuMI CCSGG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 6 cut(s) 99, 322, 496, 966, 1047, 1069
BsaWI WCCGGW 1 cut(s) 632
BsaXI ACNNNNNCTCC 2 cut(s) 1022, 1052
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 905
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 1 cut(s) 851
Bse3DI GCAATG 1 cut(s) 543
BseBI CCWGG 4 cut(s) 159, 251, 395, 729
BseDI CCNNGG 6 cut(s) 99, 322, 496, 966, 1047, 1069
BseGI GGATG 5 cut(s) 264, 301, 364, 605, 786
BseLI CCNNNNNNNGG 2 cut(s) 400, 905
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 851
BseRI GAGGAG 2 cut(s) 1046, 1049
BseSI GKGCMC 1 cut(s) 1091
BseXI GCAGC 4 cut(s) 85, 125, 228, 877
BshFI GGCC 7 cut(s) 157, 254, 321, 327, 470, 600, 1046
BshNI GGYRCC 2 cut(s) 420, 629
BshTI ACCGGT 1 cut(s) 632
BsiHKAI GWGCWC 2 cut(s) 108, 126
BsiSI CCGG 3 cut(s) 153, 176, 633
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 400, 905
BsmAI GTCTC 6 cut(s) 11, 46, 91, 175, 572, 661
BsmBI CGTCTC 3 cut(s) 91, 175, 661
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 2 cut(s) 930, 1094
BsnI GGCC 7 cut(s) 157, 254, 321, 327, 470, 600, 1046
Bso31I GGTCTC 1 cut(s) 572
Bsp1286I GDGCHC 3 cut(s) 108, 126, 1091
Bsp143I GATC 4 cut(s) 651, 769, 990, 1058
Bsp19I CCATGG 2 cut(s) 99, 496
BspACI CCGC 6 cut(s) 179, 235, 283, 310, 923, 1014
BspANI GGCC 7 cut(s) 157, 254, 321, 327, 470, 600, 1046
BspCNI CTCAG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 405, 422, 631
BspOI GCTAGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 1066
BspT107I GGYRCC 2 cut(s) 420, 629
BspTNI GGTCTC 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 1 cut(s) 851
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 6 cut(s) 99, 322, 496, 966, 1047, 1069
BssMI GATC 4 cut(s) 651, 769, 990, 1058
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 5 cut(s) 99, 496, 966, 1047, 1069
Bst2UI CCWGG 4 cut(s) 159, 251, 395, 729
Bst4CI ACNGT 1 cut(s) 831
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 1086
BstC8I GCNNGC 6 cut(s) 58, 78, 82, 239, 256, 287
BstDEI CTNAG 2 cut(s) 21, 184
BstDSI CCRYGG 2 cut(s) 99, 496
BstENI CCTNNNNNAGG 1 cut(s) 398
BstF5I GGATG 5 cut(s) 264, 301, 364, 605, 786
BstHHI GCGC 2 cut(s) 246, 895
BstKTI GATC 4 cut(s) 654, 772, 993, 1061
BstMAI GTCTC 6 cut(s) 11, 46, 91, 175, 572, 661
BstMBI GATC 4 cut(s) 651, 769, 990, 1058
BstMWI GCNNNNNNNGC 4 cut(s) 185, 243, 333, 597
BstNI CCWGG 4 cut(s) 159, 251, 395, 729
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 5 cut(s) 152, 157, 249, 393, 727
BstSLI GKGCMC 1 cut(s) 1091
BstV1I GCAGC 4 cut(s) 85, 125, 228, 877
BstV2I GAAGAC 1 cut(s) 517
BstX2I RGATCY 1 cut(s) 1058
BstXI CCANNNNNNTGG 1 cut(s) 728
BstYI RGATCY 1 cut(s) 1058
BsuRI GGCC 7 cut(s) 157, 254, 321, 327, 470, 600, 1046
BtgI CCRYGG 2 cut(s) 99, 496
BtsCI GGATG 5 cut(s) 264, 301, 364, 605, 786
BtsIMutI CAGTG 2 cut(s) 501, 836
Cac8I GCNNGC 6 cut(s) 58, 78, 82, 239, 256, 287
CciI TCATGA 1 cut(s) 387
CfoI GCGC 2 cut(s) 246, 895
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 4 cut(s) 155, 326, 403, 598
CseI GACGC 2 cut(s) 73, 224
Csp6I GTAC 4 cut(s) 316, 421, 493, 664
CspAI ACCGGT 1 cut(s) 632
CviQI GTAC 4 cut(s) 316, 421, 493, 664
DdeI CTNAG 2 cut(s) 21, 184
DpnI GATC 4 cut(s) 653, 771, 992, 1060
DpnII GATC 4 cut(s) 651, 769, 990, 1058
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 5 cut(s) 99, 496, 966, 1047, 1069
Eco147I AGGCCT 2 cut(s) 470, 1046
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 275, 920
Eco72I CACGTG 1 cut(s) 1086
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 398
EcoO109I RGGNCCY 2 cut(s) 403, 598
EcoRII CCWGG 4 cut(s) 157, 249, 393, 727
EcoT14I CCWWGG 5 cut(s) 99, 496, 966, 1047, 1069
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 5 cut(s) 99, 496, 966, 1047, 1069
Esp3I CGTCTC 3 cut(s) 91, 175, 661
FaqI GGGAC 1 cut(s) 389
FbaI TGATCA 2 cut(s) 769, 990
Fnu4HI GCNGC 5 cut(s) 74, 114, 242, 311, 891
FokI GGATG 5 cut(s) 251, 308, 371, 592, 793
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 5 cut(s) 74, 114, 242, 311, 891
FspBI CTAG 3 cut(s) 77, 230, 1011
GlaI GCGC 2 cut(s) 245, 894
GluI GCNGC 5 cut(s) 74, 114, 242, 311, 891
GsuI CTGGAG 1 cut(s) 868
HaeIII GGCC 7 cut(s) 157, 254, 321, 327, 470, 600, 1046
HapII CCGG 3 cut(s) 153, 176, 633
HgaI GACGC 2 cut(s) 73, 224
HhaI GCGC 2 cut(s) 246, 895
Hin1I GRCGYC 1 cut(s) 216
Hin6I GCGC 2 cut(s) 244, 893
HinP1I GCGC 2 cut(s) 244, 893
HincII GTYRAC 2 cut(s) 646, 999
HindII GTYRAC 2 cut(s) 646, 999
HinfI GANTC 7 cut(s) 19, 28, 454, 513, 735, 916, 1080
HpaI GTTAAC 2 cut(s) 646, 999
HpaII CCGG 3 cut(s) 153, 176, 633
HphI GGTGA 1 cut(s) 925
Hpy166II GTNNAC 2 cut(s) 646, 999
Hpy188I TCNGA 3 cut(s) 24, 46, 1079
Hpy188III TCNNGA 8 cut(s) 293, 343, 388, 443, 575, 842, 899, 983
Hpy8I GTNNAC 2 cut(s) 646, 999
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 440, 469, 678
HpyCH4III ACNGT 1 cut(s) 831
HpyCH4IV ACGT 1 cut(s) 1085
HpyCH4V TGCA 7 cut(s) 73, 193, 336, 437, 821, 930, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 243, 333, 597
HpyF3I CTNAG 2 cut(s) 21, 184
HpySE526I ACGT 1 cut(s) 1085
Hsp92I GRCGYC 1 cut(s) 216
HspAI GCGC 2 cut(s) 244, 893
KpnI GGTACC 1 cut(s) 424
Ksp22I TGATCA 2 cut(s) 769, 990
KspAI GTTAAC 2 cut(s) 646, 999
Kzo9I GATC 4 cut(s) 651, 769, 990, 1058
LmnI GCTCC 1 cut(s) 797
Lsp1109I GCAGC 4 cut(s) 85, 125, 228, 877
LweI GCATC 2 cut(s) 424, 703
MaeI CTAG 3 cut(s) 77, 230, 1011
MaeII ACGT 1 cut(s) 1085
MaeIII GTNAC 3 cut(s) 839, 851, 1081
MalI GATC 4 cut(s) 653, 771, 992, 1060
MbiI CCGCTC 1 cut(s) 310
MboI GATC 4 cut(s) 651, 769, 990, 1058
MboII GAAGA 8 cut(s) 55, 62, 517, 577, 730, 880, 889, 926
MfeI CAATTG 2 cut(s) 9, 765
MflI RGATCY 1 cut(s) 1058
MhlI GDGCHC 3 cut(s) 108, 126, 1091
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 6 cut(s) 9, 570, 748, 765, 810, 1129
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 3 cut(s) 13, 22, 1089
MmeI TCCRAC 2 cut(s) 56, 69
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 6 cut(s) 645, 675, 684, 786, 807, 998
MslI CAYNNNNRTG 1 cut(s) 560
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 3 cut(s) 153, 176, 633
MspR9I CCNGG 5 cut(s) 154, 159, 251, 395, 729
MunI CAATTG 2 cut(s) 9, 765
Mva1269I GAATGC 2 cut(s) 930, 1094
MvaI CCWGG 4 cut(s) 159, 251, 395, 729
MwoI GCNNNNNNNGC 4 cut(s) 185, 243, 333, 597
NciI CCSGG 1 cut(s) 154
NcoI CCATGG 2 cut(s) 99, 496
NdeII GATC 4 cut(s) 651, 769, 990, 1058
NheI GCTAGC 1 cut(s) 76
NlaIV GGNNCC 3 cut(s) 405, 422, 631
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 3 cut(s) 839, 851, 1081
NspI RCATGY 1 cut(s) 241
PaeI GCATGC 1 cut(s) 241
PagI TCATGA 1 cut(s) 387
PceI AGGCCT 2 cut(s) 470, 1046
PctI GAATGC 2 cut(s) 930, 1094
PfeI GAWTC 4 cut(s) 454, 513, 735, 916
PflFI GACNNNGTC 1 cut(s) 401
PinAI ACCGGT 1 cut(s) 632
PkrI GCNGC 5 cut(s) 75, 115, 243, 312, 892
PleI GAGTC 3 cut(s) 13, 22, 1088
PmaCI CACGTG 1 cut(s) 1086
PmlI CACGTG 1 cut(s) 1086
PpsI GAGTC 3 cut(s) 13, 22, 1088
Ppu21I YACGTR 1 cut(s) 1086
PpuMI RGGWCCY 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 4 cut(s) 157, 249, 393, 727
PspCI CACGTG 1 cut(s) 1086
PspGI CCWGG 4 cut(s) 157, 249, 393, 727
PspN4I GGNNCC 3 cut(s) 405, 422, 631
PspPI GGNCC 4 cut(s) 155, 326, 403, 598
PspPPI RGGWCCY 1 cut(s) 403
PsuI RGATCY 1 cut(s) 1058
PsyI GACNNNGTC 1 cut(s) 401
RsaI GTAC 4 cut(s) 317, 422, 494, 665
RsaNI GTAC 4 cut(s) 316, 421, 493, 664
RseI CAYNNNNRTG 1 cut(s) 560
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 6 cut(s) 645, 675, 684, 786, 807, 998
SatI GCNGC 5 cut(s) 74, 114, 242, 311, 891
Sau3AI GATC 4 cut(s) 651, 769, 990, 1058
Sau96I GGNCC 4 cut(s) 155, 326, 403, 598
SchI GAGTC 3 cut(s) 13, 22, 1089
ScrFI CCNGG 5 cut(s) 154, 159, 251, 395, 729
SduI GDGCHC 3 cut(s) 108, 126, 1091
SfaNI GCATC 2 cut(s) 424, 703
SgrAI CRCCGGYG 1 cut(s) 632
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 3 cut(s) 107, 134, 575
SmoI CTYRAG 3 cut(s) 107, 134, 575
SphI GCATGC 1 cut(s) 241
Sse9I AATT 6 cut(s) 9, 570, 748, 765, 810, 1129
SseBI AGGCCT 2 cut(s) 470, 1046
SsiI CCGC 6 cut(s) 179, 235, 283, 310, 923, 1014
SspI AATATT 1 cut(s) 805
SspMI CTAG 3 cut(s) 77, 230, 1011
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 2 cut(s) 470, 1046
StyD4I CCNGG 5 cut(s) 152, 157, 249, 393, 727
StyI CCWWGG 5 cut(s) 99, 496, 966, 1047, 1069
TaaI ACNGT 1 cut(s) 831
TaiI ACGT 1 cut(s) 1088
TaqI TCGA 6 cut(s) 120, 126, 306, 671, 690, 1041
TasI AATT 6 cut(s) 9, 570, 748, 765, 810, 1129
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 4 cut(s) 454, 513, 735, 916
Tru1I TTAA 6 cut(s) 645, 675, 684, 786, 807, 998
Tru9I TTAA 6 cut(s) 645, 675, 684, 786, 807, 998
TscAI CASTG 2 cut(s) 508, 836
TseFI GTSAC 3 cut(s) 839, 851, 1081
TseI GCWGC 4 cut(s) 73, 113, 241, 890
Tsp45I GTSAC 3 cut(s) 839, 851, 1081
TspDTI ATGAA 3 cut(s) 404, 578, 730
TspGWI ACGGA 3 cut(s) 79, 598, 1043
TspRI CASTG 2 cut(s) 508, 836
Tth111I GACNNNGTC 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 403
XagI CCTNNNNNAGG 1 cut(s) 398
XapI RAATTY 1 cut(s) 570
XceI RCATGY 1 cut(s) 241
XspI CTAG 3 cut(s) 77, 230, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.