MD07G1300200.v1.1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
35905873 .. 35910849
4977 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1300200.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGTGTTCGACCGGAGAGAATCAGATGACTCCAACCCAAGTCTCCGACGAAGAAACCAACCTCTTCGCCATGCAGCTCGCCAGCGCCTCCGTTCCCCCCATGGTGCTCAAGGCAGCCCTCGAGCTCGACCTCCTCGAGATCATGGCGAAGGCCGGGCCTGGCGCTTTCGTTTCTCCGGCGGACTTAGCTTCGCAGCTGCCGACCAAGAACCCTGACGCCCCCGTCATCCTGGACCGCATGCTGCGCCTGCTGGCCAGCTACTCCATCTTCACTTACTCCCTCCGCACGCTTCCCGATGGCAAAGTAGAGCGGCTGTACGGCCTCGGCCCCGTCTGCAAGTTATTGACAAAGAACGAGGATGGTGTGTCCATTGCTCCTCACTTACTCCTAACTCAGGACAAGGTCCTTGTTGAGAGCTGGTACCACTTGAAAGATGCTGTTCTTGAAGGAGGAATTGCATTCAACAAGGCCTATGGAATGACTACTTTTGAGTACCACGGCACTGACCCTAGATTCAACAAGGTTTTTAACAAGGCAATGGCTGACCAATCTAGCATTGCCATGAAGAAACTTCTTGAGACCTACAAGGGCTTTGAGGGCCTCACATCCGTCGTTGATGTTGGTGGTGGCATCGGCAGTGTTATTCACATGATTGTCTCTAAGTACCCCTCAATTAAGGGCATTAACTTCGACTTGCCTCATGTCATCAAAGATGCTCCCCAATATCCTGGTGTGGAGCATGTTGGAGGAGACATGTTCGTAAGTGTTCCAAAGGGAGATGCAATTGTCATGAAACATATATGTCACGATTGGAGTGACGAGCATTGCTTGAAACTTTTGAAGAACTGCCACGCTGCGCTCCCCGACAATGGGAAGGTGATTCTTGTTGAGATCATTATTCCGGTATCTCCAGACAGCAGCCTTGCCACCAAGTTAGCTAACCATATCGACGTGCTCATGTTAGCTAACAACCCCGGCGGAAAAGAGAGGACGGAGGAGGAGTTTGAGGCCTTGGCTAAGGAATCTGGATTCCAAGGCTTCCGCGTCATGTGCTCCGCTTTCCACAGCAATGTCATTGAATTTCTTAAGAAGAATTTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

368

Amino Acids

40.04

Weight (kDa)

5.75

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 24 - 117 1.4e-15 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 140 - 345 1.2e-75 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
Acc65I GGTACC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 420
AccBSI CCGCTC 1 cut(s) 310
AccII CGCG 1 cut(s) 1044
AciI CCGC 7 cut(s) 179, 235, 283, 310, 978, 1042, 1056
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 1079, 1093
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 4 cut(s) 317, 422, 494, 665
AfiI CCNNNNNNNGG 3 cut(s) 394, 869, 870
AflII CTTAAG 1 cut(s) 1085
AflIII ACRYGT 1 cut(s) 753
AgsI TTSAA 7 cut(s) 430, 446, 463, 517, 832, 841, 1079
AjiI CACGTC 1 cut(s) 952
AjnI CCWGG 3 cut(s) 157, 228, 727
AluBI AGCT 8 cut(s) 76, 124, 188, 196, 258, 417, 938, 965
AluI AGCT 8 cut(s) 76, 124, 188, 196, 258, 417, 938, 965
Alw21I GWGCWC 4 cut(s) 108, 126, 957, 1055
Alw26I GTCTC 4 cut(s) 46, 572, 661, 744
Ama87I CYCGRG 2 cut(s) 119, 134
AoxI GGCC 8 cut(s) 150, 155, 252, 319, 325, 468, 598, 1008
ApeKI GCWGC 7 cut(s) 73, 113, 193, 196, 241, 854, 918
ApoI RAATTY 2 cut(s) 1079, 1093
Asp718I GGTACC 1 cut(s) 420
AspLEI GCGC 4 cut(s) 86, 164, 246, 859
AspS9I GGNCC 5 cut(s) 155, 232, 326, 403, 598
AsuC2I CCSGG 2 cut(s) 154, 975
AsuHPI GGTGA 1 cut(s) 889
AvaI CYCGRG 2 cut(s) 119, 134
AvaII GGWCC 2 cut(s) 232, 403
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 420
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 4 cut(s) 108, 126, 957, 1055
BbvI GCAGC 7 cut(s) 85, 125, 183, 205, 228, 841, 930
BccI CCATC 3 cut(s) 272, 290, 353
BceAI ACGGC 2 cut(s) 334, 514
BcgI CGANNNNNNTGC 2 cut(s) 670, 704
BciT130I CCWGG 3 cut(s) 159, 230, 729
BcnI CCSGG 2 cut(s) 154, 975
BcoDI GTCTC 4 cut(s) 46, 572, 661, 744
BfaI CTAG 2 cut(s) 510, 552
BfoI RGCGCY 2 cut(s) 87, 165
BfrI CTTAAG 1 cut(s) 1085
BisI GCNGC 8 cut(s) 74, 114, 194, 197, 242, 311, 855, 919
BlsI GCNGC 8 cut(s) 75, 115, 195, 198, 243, 312, 856, 920
Bme1390I CCNGG 5 cut(s) 154, 159, 230, 729, 975
Bme18I GGWCC 2 cut(s) 232, 403
BmeT110I CYCGRG 2 cut(s) 119, 134
BmgBI CACGTC 1 cut(s) 952
BmgT120I GGNCC 5 cut(s) 155, 232, 326, 403, 598
BmiI GGNNCC 2 cut(s) 328, 422
BmrFI CCNGG 5 cut(s) 154, 159, 230, 729, 975
BmsI GCATC 4 cut(s) 424, 639, 703, 769
BpmI CTGGAG 1 cut(s) 894
Bpu10I CCTNAGC 1 cut(s) 1017
BpuEI CTTGAG 2 cut(s) 92, 596
BpuMI CCSGG 2 cut(s) 154, 975
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 6 cut(s) 99, 322, 496, 973, 1011, 1033
BsaWI WCCGGW 2 cut(s) 11, 901
BsaXI ACNNNNNCTCC 2 cut(s) 986, 1016
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 869, 870
Bse3DI GCAATG 5 cut(s) 369, 543, 555, 823, 1075
BseBI CCWGG 3 cut(s) 159, 230, 729
BseDI CCNNGG 6 cut(s) 99, 322, 496, 973, 1011, 1033
BseGI GGATG 3 cut(s) 225, 364, 605
BseLI CCNNNNNNNGG 3 cut(s) 394, 869, 870
BseMI GCAATG 5 cut(s) 369, 543, 555, 823, 1075
BseMII CTCAG 1 cut(s) 407
BseRI GAGGAG 5 cut(s) 122, 366, 762, 1010, 1013
BseXI GCAGC 7 cut(s) 85, 125, 183, 205, 228, 841, 930
Bsh1236I CGCG 1 cut(s) 1044
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 8 cut(s) 152, 157, 254, 321, 327, 470, 600, 1010
BshNI GGYRCC 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 4 cut(s) 108, 126, 957, 1055
BsiHKCI CYCGRG 2 cut(s) 119, 134
BsiSI CCGG 5 cut(s) 12, 153, 176, 902, 975
BslI CCNNNNNNNGG 3 cut(s) 394, 869, 870
BsmAI GTCTC 4 cut(s) 46, 572, 661, 744
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 8 cut(s) 152, 157, 254, 321, 327, 470, 600, 1010
Bso31I GGTCTC 1 cut(s) 572
BsoBI CYCGRG 2 cut(s) 119, 134
Bsp1286I GDGCHC 4 cut(s) 108, 126, 957, 1055
Bsp143I GATC 2 cut(s) 138, 891
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 7 cut(s) 179, 235, 283, 310, 978, 1042, 1056
BspANI GGCC 8 cut(s) 152, 157, 254, 321, 327, 470, 600, 1010
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 1044
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 2 cut(s) 328, 422
BspT107I GGYRCC 1 cut(s) 420
BspTI CTTAAG 1 cut(s) 1085
BspTNI GGTCTC 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 5 cut(s) 369, 543, 555, 823, 1075
BssECI CCNNGG 6 cut(s) 99, 322, 496, 973, 1011, 1033
BssMI GATC 2 cut(s) 138, 891
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 3 cut(s) 99, 1011, 1033
Bst2UI CCWGG 3 cut(s) 159, 230, 729
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 216
BstAFI CTTAAG 1 cut(s) 1085
BstC8I GCNNGC 7 cut(s) 78, 82, 239, 248, 252, 256, 287
BstDEI CTNAG 4 cut(s) 184, 393, 660, 1017
BstDSI CCRYGG 2 cut(s) 99, 496
BstENI CCTNNNNNAGG 1 cut(s) 392
BstF5I GGATG 3 cut(s) 225, 364, 605
BstFNI CGCG 1 cut(s) 1044
BstH2I RGCGCY 2 cut(s) 87, 165
BstHHI GCGC 4 cut(s) 86, 164, 246, 859
BstKTI GATC 2 cut(s) 141, 894
BstMAI GTCTC 4 cut(s) 46, 572, 661, 744
BstMBI GATC 2 cut(s) 138, 891
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 6 cut(s) 185, 243, 247, 333, 597, 1050
BstNI CCWGG 3 cut(s) 159, 230, 729
BstNSI RCATGY 3 cut(s) 241, 743, 757
BstSCI CCNGG 5 cut(s) 152, 157, 228, 727, 973
BstUI CGCG 1 cut(s) 1044
BstV1I GCAGC 7 cut(s) 85, 125, 183, 205, 228, 841, 930
BstXI CCANNNNNNTGG 1 cut(s) 728
BsuRI GGCC 8 cut(s) 152, 157, 254, 321, 327, 470, 600, 1010
BtgI CCRYGG 2 cut(s) 99, 496
BtrI CACGTC 1 cut(s) 952
BtsCI GGATG 3 cut(s) 225, 364, 605
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 2 cut(s) 501, 643
Cac8I GCNNGC 7 cut(s) 78, 82, 239, 248, 252, 256, 287
CciI TCATGA 1 cut(s) 789
CfoI GCGC 4 cut(s) 86, 164, 246, 859
Cfr13I GGNCC 5 cut(s) 155, 232, 326, 403, 598
CseI GACGC 2 cut(s) 224, 1033
Csp6I GTAC 4 cut(s) 316, 421, 493, 664
CviQI GTAC 4 cut(s) 316, 421, 493, 664
DdeI CTNAG 4 cut(s) 184, 393, 660, 1017
DpnI GATC 2 cut(s) 140, 893
DpnII GATC 2 cut(s) 138, 891
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 2 cut(s) 194, 993
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 3 cut(s) 99, 1011, 1033
Eco147I AGGCCT 2 cut(s) 470, 1010
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 2 cut(s) 232, 403
Eco53kI GAGCTC 1 cut(s) 124
Eco88I CYCGRG 2 cut(s) 119, 134
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 403, 598
EcoRII CCWGG 3 cut(s) 157, 228, 727
EcoT14I CCWWGG 3 cut(s) 99, 1011, 1033
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 3 cut(s) 99, 1011, 1033
Fnu4HI GCNGC 8 cut(s) 74, 114, 194, 197, 242, 311, 855, 919
FokI GGATG 3 cut(s) 212, 371, 592
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 8 cut(s) 74, 114, 194, 197, 242, 311, 855, 919
FspBI CTAG 2 cut(s) 510, 552
GlaI GCGC 4 cut(s) 85, 163, 245, 858
GluI GCNGC 8 cut(s) 74, 114, 194, 197, 242, 311, 855, 919
GsuI CTGGAG 1 cut(s) 894
HaeII RGCGCY 2 cut(s) 87, 165
HaeIII GGCC 8 cut(s) 152, 157, 254, 321, 327, 470, 600, 1010
HapII CCGG 5 cut(s) 12, 153, 176, 902, 975
HgaI GACGC 2 cut(s) 224, 1033
HhaI GCGC 4 cut(s) 86, 164, 246, 859
Hin1I GRCGYC 1 cut(s) 216
Hin6I GCGC 4 cut(s) 84, 162, 244, 857
HinP1I GCGC 4 cut(s) 84, 162, 244, 857
HinfI GANTC 6 cut(s) 19, 28, 513, 880, 1022, 1029
HpaII CCGG 5 cut(s) 12, 153, 176, 902, 975
HphI GGTGA 1 cut(s) 889
Hpy188I TCNGA 2 cut(s) 24, 46
Hpy188III TCNNGA 9 cut(s) 136, 293, 395, 443, 575, 790, 806, 911, 1026
Hpy99I CGWCG 3 cut(s) 50, 614, 953
HpyAV CCTTC 3 cut(s) 142, 440, 868
HpyCH4IV ACGT 1 cut(s) 951
HpyCH4V TGCA 4 cut(s) 73, 336, 458, 782
HpyF10VI GCNNNNNNNGC 6 cut(s) 185, 243, 247, 333, 597, 1050
HpyF3I CTNAG 4 cut(s) 184, 393, 660, 1017
HpySE526I ACGT 1 cut(s) 951
Hsp92I GRCGYC 1 cut(s) 216
HspAI GCGC 4 cut(s) 84, 162, 244, 857
KpnI GGTACC 1 cut(s) 424
Kzo9I GATC 2 cut(s) 138, 891
LmnI GCTCC 5 cut(s) 379, 721, 736, 864, 1058
Lsp1109I GCAGC 7 cut(s) 85, 125, 183, 205, 228, 841, 930
LweI GCATC 4 cut(s) 424, 639, 703, 769
MaeI CTAG 2 cut(s) 510, 552
MaeII ACGT 1 cut(s) 951
MaeIII GTNAC 2 cut(s) 803, 815
MalI GATC 2 cut(s) 140, 893
MbiI CCGCTC 1 cut(s) 310
MboI GATC 2 cut(s) 138, 891
MboII GAAGA 6 cut(s) 55, 62, 259, 577, 853, 1102
MfeI CAATTG 1 cut(s) 783
MhlI GDGCHC 4 cut(s) 108, 126, 957, 1055
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 5 cut(s) 453, 672, 783, 1079, 1093
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 3 cut(s) 56, 69, 724
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 4 cut(s) 528, 675, 684, 1086
MslI CAYNNNNRTG 2 cut(s) 560, 1068
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 196
MspCI CTTAAG 1 cut(s) 1085
MspI CCGG 5 cut(s) 12, 153, 176, 902, 975
MspR9I CCNGG 5 cut(s) 154, 159, 230, 729, 975
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 3 cut(s) 159, 230, 729
MvnI CGCG 1 cut(s) 1044
MwoI GCNNNNNNNGC 6 cut(s) 185, 243, 247, 333, 597, 1050
NciI CCSGG 2 cut(s) 154, 975
NcoI CCATGG 1 cut(s) 99
NdeII GATC 2 cut(s) 138, 891
NlaIV GGNNCC 2 cut(s) 328, 422
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 803, 815
NspI RCATGY 3 cut(s) 241, 743, 757
PaeI GCATGC 1 cut(s) 241
PaeR7I CTCGAG 2 cut(s) 119, 134
PagI TCATGA 1 cut(s) 789
PceI AGGCCT 2 cut(s) 470, 1010
PciI ACATGT 1 cut(s) 753
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 197
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 5 cut(s) 19, 513, 880, 1022, 1029
PflFI GACNNNGTC 1 cut(s) 401
PfoI TCCNGGA 1 cut(s) 228
PkrI GCNGC 8 cut(s) 75, 115, 195, 198, 243, 312, 856, 920
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 1 cut(s) 403
PscI ACATGT 1 cut(s) 753
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 3 cut(s) 157, 228, 727
PspGI CCWGG 3 cut(s) 157, 228, 727
PspN4I GGNNCC 2 cut(s) 328, 422
PspPI GGNCC 5 cut(s) 155, 232, 326, 403, 598
PspPPI RGGWCCY 1 cut(s) 403
PspXI VCTCGAGB 1 cut(s) 119
PsyI GACNNNGTC 1 cut(s) 401
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 4 cut(s) 317, 422, 494, 665
RsaNI GTAC 4 cut(s) 316, 421, 493, 664
RseI CAYNNNNRTG 2 cut(s) 560, 1068
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 4 cut(s) 528, 675, 684, 1086
SatI GCNGC 8 cut(s) 74, 114, 194, 197, 242, 311, 855, 919
Sau3AI GATC 2 cut(s) 138, 891
Sau96I GGNCC 5 cut(s) 155, 232, 326, 403, 598
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 5 cut(s) 154, 159, 230, 729, 975
SduI GDGCHC 4 cut(s) 108, 126, 957, 1055
SfaNI GCATC 4 cut(s) 424, 639, 703, 769
Sfr274I CTCGAG 2 cut(s) 119, 134
SinI GGWCC 2 cut(s) 232, 403
SlaI CTCGAG 2 cut(s) 119, 134
SmiMI CAYNNNNRTG 2 cut(s) 560, 1068
SmlI CTYRAG 5 cut(s) 107, 119, 134, 575, 1085
SmoI CTYRAG 5 cut(s) 107, 119, 134, 575, 1085
SphI GCATGC 1 cut(s) 241
Sse9I AATT 5 cut(s) 453, 672, 783, 1079, 1093
SseBI AGGCCT 2 cut(s) 470, 1010
SsiI CCGC 7 cut(s) 179, 235, 283, 310, 978, 1042, 1056
SspMI CTAG 2 cut(s) 510, 552
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 2 cut(s) 470, 1010
StyD4I CCNGG 5 cut(s) 152, 157, 228, 727, 973
StyI CCWWGG 3 cut(s) 99, 1011, 1033
TaiI ACGT 1 cut(s) 954
TaqI TCGA 6 cut(s) 8, 120, 126, 135, 690, 948
TasI AATT 5 cut(s) 453, 672, 783, 1079, 1093
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 5 cut(s) 19, 513, 880, 1022, 1029
Tru1I TTAA 4 cut(s) 528, 675, 684, 1086
Tru9I TTAA 4 cut(s) 528, 675, 684, 1086
TscAI CASTG 2 cut(s) 508, 643
TseFI GTSAC 2 cut(s) 803, 815
TseI GCWGC 7 cut(s) 73, 113, 193, 196, 241, 854, 918
Tsp45I GTSAC 2 cut(s) 803, 815
TspDTI ATGAA 2 cut(s) 578, 806
TspGWI ACGGA 3 cut(s) 79, 598, 1007
TspRI CASTG 2 cut(s) 508, 643
Tth111I GACNNNGTC 1 cut(s) 401
Vha464I CTTAAG 1 cut(s) 1085
VpaK11BI GGWCC 2 cut(s) 232, 403
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 2 cut(s) 1079, 1093
XceI RCATGY 3 cut(s) 241, 743, 757
XhoI CTCGAG 2 cut(s) 119, 134
XspI CTAG 2 cut(s) 510, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.