Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003088

Physical Location & Seq

Genomic Coordinates Reverse (-)

31854555 .. 31856012

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1229000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGCCTCACATGCATCGTTGATGTTGGTGGTGGCACTGGCGCTATCCTTAACATGATCGTCTCTAAATACCCTTCGATTAAGGGCATTAATTTCGACTTGCCTCATGTCATCGAAGATGCTCCTCAATATCCTGGTGTGGAGCATGTTGGAGGAGACATGTTTGTAAGTGTTCCAAAGGGAGATGCAATTTTCATGAAGTGGATATGCCACGACTGGAGTGACGAGCATTGCTTGAAATTTTTGAAGAACTGCTATGCTGCGCTCCCTGACAATGGGAAGGTAATTGTTGCTGAGTGCATTCTTCCAGTAGCTCCGGACAGCAGCCTTGCCACCAAGGGAGTTGTCCATATCGACGAGATCATGTTAGCTCACAACCCCGGCGGAAAAGAGAGGACGGAGAAGGAGTTCGAGGCCTTGGCTAAGGGATCTGGATTCCAAGGCTTTCGAGTCGTGTGCTCTGCCTTCAACACCTATGCCATTGAATTTCTTAAGAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

168

Amino Acids

18.11

Weight (kDa)

5.63

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_2	PF00891	1 - 147	1.2e-56	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54160
fragaria_vesca	FvH4_7g32990
malus_domestica	MD01G1218900.v1.1 MD01G1219000.v1.1 MD01G1228900.v1.1 MD01G1229000.v1.1 MD01G1229100.v1.1 MD07G1209500.v1.1 MD07G1209700.v1.1 MD07G1209800.v1.1 MD07G1300000.v1.1 MD07G1300200.v1.1 MD07G1300300.v1.1 MD07G1300500.v1.1 MD07G1300700.v1.1 MD07G1300900.v1.1 MD07G1301000.v1.1 MD07G1301100.v1.1
prunus_persica	Prupe.2G319700_v2.0.a1 Prupe.2G319700_v2.0.a1
pyrus_communis	pycom01g23690 pycom01g23700 pycom01g23720 pycom07g27240 pycom07g27260 pycom07g27320 pycom07g27330 pycom07g27350
rosa_chinensis	RchiOBHm_Chr1g0382961
rosa_laevigata	RLG00000026145
rosa_roxburghii	Rroxscaffold_4G00277740
rosa_rugosa	Rorug01G0437400
rosa_samantha	Rh1AG462900 Rh1BG419900 Rh1CG433700 Rh1DG451900
rosa_wichuraiana	Rw1G040910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	239, 485
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	238, 247, 469, 485
AjnI	CCWGG	1 cut(s)	133
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	2 cut(s)	314, 371
AluI	AGCT	2 cut(s)	314, 371
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	2 cut(s)	67, 150
AlwI	GGATC	1 cut(s)	436
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	2 cut(s)	4, 414
ApeKI	GCWGC	2 cut(s)	260, 324
ApoI	RAATTY	2 cut(s)	239, 485
AseI	ATTAAT	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	44, 265
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	247, 336
BcgI	CGANNNNNNTGC	4 cut(s)	76, 110, 438, 472
BciT130I	CCWGG	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	67, 150
BfoI	RGCGCY	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	491
BisI	GCNGC	2 cut(s)	261, 325
BlsI	GCNGC	2 cut(s)	262, 326
Bme1390I	CCNGG	2 cut(s)	135, 381
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	135, 381
BmsI	GCATC	3 cut(s)	24, 109, 175
BpmI	CTGGAG	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	336, 379, 417, 439
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	3 cut(s)	43, 221, 308
Bse3DI	GCAATG	1 cut(s)	229
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	4 cut(s)	336, 379, 417, 439
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	3 cut(s)	43, 221, 308
BseRI	GAGGAG	2 cut(s)	114, 168
BseXI	GCAGC	2 cut(s)	247, 336
BshFI	GGCC	2 cut(s)	6, 416
BsiHKAI	GWGCWC	1 cut(s)	461
BsiSI	CCGG	2 cut(s)	317, 381
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	67, 150
BsmBI	CGTCTC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	6, 416
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	57, 360, 428
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	2 cut(s)	6, 416
BspCNI	CTCAG	1 cut(s)	286
BspEI	TCCGGA	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	195
BspPI	GGATC	1 cut(s)	436
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	3 cut(s)	43, 221, 308
BssECI	CCNNGG	4 cut(s)	336, 379, 417, 439
BssMI	GATC	3 cut(s)	57, 360, 428
BssT1I	CCWWGG	3 cut(s)	336, 417, 439
Bst2UI	CCWGG	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	491
BstDEI	CTNAG	2 cut(s)	294, 423
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 265
BstKTI	GATC	3 cut(s)	60, 363, 431
BstMAI	GTCTC	2 cut(s)	67, 150
BstMBI	GATC	3 cut(s)	57, 360, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	3 cut(s)	15, 149, 163
BstSCI	CCNGG	2 cut(s)	133, 379
BstV1I	GCAGC	2 cut(s)	247, 336
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	6, 416
BtsIMutI	CAGTG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	2 cut(s)	44, 265
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	7 cut(s)	12, 55, 107, 146, 160, 196, 364
CviJI	RGCY	7 cut(s)	6, 314, 327, 371, 416, 422, 444
CviKI_1	RGCY	7 cut(s)	6, 314, 327, 371, 416, 422, 444
DdeI	CTNAG	2 cut(s)	294, 423
DpnI	GATC	3 cut(s)	59, 362, 430
DpnII	GATC	3 cut(s)	57, 360, 428
EciI	GGCGGA	1 cut(s)	399
Eco130I	CCWWGG	3 cut(s)	336, 417, 439
Eco147I	AGGCCT	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	336, 417, 439
EcoT22I	ATGCAT	1 cut(s)	17
ErhI	CCWWGG	3 cut(s)	336, 417, 439
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	7 cut(s)	15, 58, 110, 149, 163, 199, 367
FatI	CATG	7 cut(s)	11, 54, 106, 145, 159, 195, 363
Fnu4HI	GCNGC	2 cut(s)	261, 325
Fsp4HI	GCNGC	2 cut(s)	261, 325
GlaI	GCGC	2 cut(s)	43, 264
GluI	GCNGC	2 cut(s)	261, 325
GsuI	CTGGAG	1 cut(s)	238
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	6, 416
HapII	CCGG	2 cut(s)	317, 381
HhaI	GCGC	2 cut(s)	44, 265
Hin1II	CATG	7 cut(s)	15, 58, 110, 149, 163, 199, 367
Hin6I	GCGC	2 cut(s)	42, 263
HinP1I	GCGC	2 cut(s)	42, 263
HinfI	GANTC	2 cut(s)	435, 450
HpaII	CCGG	2 cut(s)	317, 381
Hpy188III	TCNNGA	3 cut(s)	196, 317, 432
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	4 cut(s)	84, 274, 397, 475
HpyCH4V	TGCA	3 cut(s)	15, 188, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	2 cut(s)	294, 423
Hsp92II	CATG	7 cut(s)	15, 58, 110, 149, 163, 199, 367
HspAI	GCGC	2 cut(s)	42, 263
Kpn2I	TCCGGA	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	57, 360, 428
LmnI	GCTCC	4 cut(s)	127, 142, 270, 319
LpnPI	CCDG	9 cut(s)	24, 120, 147, 202, 282, 321, 330, 394, 417
Lsp1109I	GCAGC	2 cut(s)	247, 336
LweI	GCATC	3 cut(s)	24, 109, 175
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	3 cut(s)	59, 362, 430
MboI	GATC	3 cut(s)	57, 360, 428
MboII	GAAGA	3 cut(s)	128, 259, 296
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	6 cut(s)	91, 189, 239, 285, 485, 499
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	6 cut(s)	17, 114, 135, 146, 387, 406
Mph1103I	ATGCAT	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	4 cut(s)	51, 81, 90, 492
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	2 cut(s)	317, 381
MspR9I	CCNGG	2 cut(s)	135, 381
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	3 cut(s)	57, 360, 428
NlaIII	CATG	7 cut(s)	15, 58, 110, 149, 163, 199, 367
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	17
NspI	RCATGY	3 cut(s)	15, 149, 163
PagI	TCATGA	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	416
PciI	ACATGT	1 cut(s)	159
PctI	GAATGC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	262, 326
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PscI	ACATGT	1 cut(s)	159
PshBI	ATTAAT	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	428
SaqAI	TTAA	4 cut(s)	51, 81, 90, 492
SatI	GCNGC	2 cut(s)	261, 325
Sau3AI	GATC	3 cut(s)	57, 360, 428
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	2 cut(s)	135, 381
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	4 cut(s)	285, 316, 373, 476
SfaNI	GCATC	3 cut(s)	24, 109, 175
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	6 cut(s)	91, 189, 239, 285, 485, 499
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	133, 379
StyI	CCWWGG	3 cut(s)	336, 417, 439
TaqI	TCGA	6 cut(s)	77, 96, 114, 354, 411, 448
TasI	AATT	6 cut(s)	91, 189, 239, 285, 485, 499
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	4 cut(s)	51, 81, 90, 492
Tru9I	TTAA	4 cut(s)	51, 81, 90, 492
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	260, 324
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	184, 212
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	43
Vha464I	CTTAAG	1 cut(s)	491
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	2 cut(s)	239, 485
XceI	RCATGY	3 cut(s)	15, 149, 163
XmnI	GAANNNNTTC	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.