AT5G55630

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002844
Physical Location & Seq
Forward (+)
22531358 .. 22533122
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55630.2

Sequence Viewer

Length: 1092 bp
ATGTCGAGTGATGCAGCTCGTACGCCATTGTTACCCACTGAGAAGATAGATACCATGGCTCAAGATTTCAACCTGAACTCAAGAACTTCTTCTTCAAGAAAACGAAGATTGCGTCGCTCTAGAAGTGCTCCTCGTGGTGATTGTATGTACAATGATGATGTCAAAATCGACGAACCACCTCCTCATCCGAGTAAAATCCCAATGTTCAGTGATCTAAACCCGAATCTCAGGCGAGTGATCATGTTCTTGGCTTTATATCTTACCATTGGTACGCTCTGTTTCTACCTCGTGAGAGACCAGATCTCCGGTCATAAAACCAGTGGTGTGGTAGATGCTCTCTATTTCTGTATAGTAACGATGACAACTGTTGGATACGGTGACCTTGTCCCTAATAGTTCCGCCTCAAGGCTACTTGCTTGTGCCTTCGTCTTCTCGGGAATGGTCCTCGTTGGTCACCTCTTAAGTCGAGCGGCGGATTATCTAGTGGAGAAACAAGAGGCTTTGCTCGTTAGGGCTTTCCATTTGCGTCAAAGCTTTGGTCCAACAGACATTCTCAAGGAGTTGCATACTAACAAGTTGAGATACAAATGCTATGCTACATGCCTTGTCCTTGTAGTCCTCTTCATTGTTGGCACGATTTTCCTTGTAATGGTTGAGAAAATGCCGGTTATCTCAGCTTTCTACTGCGTCTGCTCCACGGTTACAACATTGGGTTATGGAGATAAGAGCTTTAACTCGGAAGCCGGACGCCTTTTTGCTGTGTTTTGGATCTTGACGAGCAGCATATGTTTGGCTCAGTTTTTCCTTTATGTAGCTGAGCTAAATACAGAAAACAAACAGAGGGCGTTGGTGAAATGGGTTTTAACGCGAAGAATCACAAACAATGATCTCGAAGCAGCTGATCTCGATGAAGATGGAGTTGTTGGAGCTGCAGAGTTTATTGTGTATAAACTGAAAGAAATGGGTAAGATTGATGAGAAAGATATTTCTGGGATAATGGATGAGTTCGAGCAACTTGATTACGATGAATCAGGAACTCTCACGACTTCTGACATCGTTTTAGCTCAGACCACGTCTCAGATTCAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

363

Amino Acids

40.73

Weight (kDa)

6.25

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 82 - 162 4.5e-17 Ion channel
Ion_trans_2 PF07885 203 - 275 1.6e-13 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 470
AccII CGCG 1 cut(s) 868
AciI CCGC 3 cut(s) 399, 470, 473
AclWI GGATC 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 748
AfaI GTAC 3 cut(s) 22, 149, 271
AfiI CCNNNNNNNGG 2 cut(s) 405, 649
AflII CTTAAG 1 cut(s) 460
AgsI TTSAA 3 cut(s) 70, 96, 1085
AjiI CACGTC 1 cut(s) 1074
AluBI AGCT 9 cut(s) 17, 534, 677, 729, 815, 820, 899, 929, 1064
AluI AGCT 9 cut(s) 17, 534, 677, 729, 815, 820, 899, 929, 1064
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 288, 1080
AlwI GGATC 1 cut(s) 776
Ama87I CYCGRG 1 cut(s) 433
ApeKI GCWGC 4 cut(s) 14, 780, 896, 929
ArsI GACNNNNNNTTYG 4 cut(s) 97, 129, 523, 555
Asp700I GAANNNNTTC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 442, 539
AsuHPI GGTGA 4 cut(s) 149, 389, 446, 862
AvaI CYCGRG 1 cut(s) 433
AvaII GGWCC 2 cut(s) 442, 539
BauI CACGAG 2 cut(s) 132, 287
BbsI GAAGAC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 4 cut(s) 26, 792, 908, 916
BccI CCATC 1 cut(s) 908
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 237
BcoDI GTCTC 2 cut(s) 288, 1080
BfaI CTAG 2 cut(s) 120, 482
BfmI CTRYAG 1 cut(s) 930
BfrI CTTAAG 1 cut(s) 460
BfuI GTATCC 1 cut(s) 365
BglII AGATCT 1 cut(s) 300
BisI GCNGC 5 cut(s) 15, 471, 781, 897, 930
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 5 cut(s) 16, 472, 782, 898, 931
Bme18I GGWCC 2 cut(s) 442, 539
BmeT110I CYCGRG 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 1074
BmgT120I GGNCC 2 cut(s) 442, 539
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 421
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 4 cut(s) 45, 64, 388, 539
BsaHI GRCGYC 1 cut(s) 748
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 54, 696
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 649
Bse118I RCCGGY 1 cut(s) 664
Bse1I ACTGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 54, 696
BseGI GGATG 2 cut(s) 184, 1006
BseLI CCNNNNNNNGG 2 cut(s) 405, 649
BseMII CTCAG 7 cut(s) 30, 241, 687, 807, 809, 1079, 1091
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 2 cut(s) 120, 171
BseXI GCAGC 4 cut(s) 26, 792, 908, 916
Bsh1236I CGCG 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 3 cut(s) 306, 665, 744
BsiWI CGTACG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 405, 649
BsmAI GTCTC 2 cut(s) 288, 1080
BsmBI CGTCTC 1 cut(s) 1080
BsmFI GGGAC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 6 cut(s) 211, 237, 300, 768, 886, 901
Bsp1720I GCTNAGC 1 cut(s) 816
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 3 cut(s) 399, 470, 473
BspCNI CTCAG 7 cut(s) 31, 240, 686, 808, 808, 1078, 1090
BspFNI CGCG 1 cut(s) 868
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 1 cut(s) 776
BspTI CTTAAG 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 664
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 664
BssECI CCNNGG 2 cut(s) 54, 696
BssMI GATC 6 cut(s) 211, 237, 300, 768, 886, 901
BssNI GRCGYC 1 cut(s) 748
BssSI CACGAG 2 cut(s) 132, 287
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 2 cut(s) 132, 287
Bst4CI ACNGT 3 cut(s) 367, 377, 700
Bst6I CTCTTC 1 cut(s) 626
BstACI GRCGYC 1 cut(s) 748
BstAFI CTTAAG 1 cut(s) 460
BstAUI TGTACA 1 cut(s) 147
BstDEI CTNAG 7 cut(s) 39, 227, 673, 795, 816, 1065, 1077
BstDSI CCRYGG 2 cut(s) 54, 696
BstEII GGTNACC 2 cut(s) 377, 452
BstF5I GGATG 2 cut(s) 184, 1006
BstFNI CGCG 1 cut(s) 868
BstKTI GATC 6 cut(s) 214, 240, 303, 771, 889, 904
BstMAI GTCTC 2 cut(s) 288, 1080
BstMBI GATC 6 cut(s) 211, 237, 300, 768, 886, 901
BstNSI RCATGY 1 cut(s) 603
BstPI GGTNACC 2 cut(s) 377, 452
BstSFI CTRYAG 1 cut(s) 930
BstUI CGCG 1 cut(s) 868
BstV1I GCAGC 4 cut(s) 26, 792, 908, 916
BstV2I GAAGAC 1 cut(s) 421
BstX2I RGATCY 2 cut(s) 300, 768
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 2 cut(s) 300, 768
BsuI GTATCC 1 cut(s) 365
BtgI CCRYGG 2 cut(s) 54, 696
BtrI CACGTC 1 cut(s) 1074
BtsCI GGATG 2 cut(s) 184, 1006
BtsIMutI CAGTG 3 cut(s) 36, 214, 325
Cfr10I RCCGGY 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 442, 539
CseI GACGC 4 cut(s) 101, 515, 676, 756
Csp6I GTAC 3 cut(s) 21, 148, 270
CviAII CATG 3 cut(s) 55, 241, 600
CviQI GTAC 3 cut(s) 21, 148, 270
DdeI CTNAG 7 cut(s) 39, 227, 673, 795, 816, 1065, 1077
DpnI GATC 6 cut(s) 213, 239, 302, 770, 888, 903
DpnII GATC 6 cut(s) 211, 237, 300, 768, 886, 901
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
EciI GGCGGA 2 cut(s) 388, 488
Eco130I CCWWGG 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 442, 539
Eco88I CYCGRG 1 cut(s) 433
Eco91I GGTNACC 2 cut(s) 377, 452
EcoO65I GGTNACC 2 cut(s) 377, 452
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 1080
FaeI CATG 3 cut(s) 58, 244, 603
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FaqI GGGAC 1 cut(s) 371
FatI CATG 3 cut(s) 54, 240, 599
FauNDI CATATG 1 cut(s) 785
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 5 cut(s) 15, 471, 781, 897, 930
FokI GGATG 2 cut(s) 171, 1013
Fsp4HI GCNGC 5 cut(s) 15, 471, 781, 897, 930
FspBI CTAG 2 cut(s) 120, 482
GluI GCNGC 5 cut(s) 15, 471, 781, 897, 930
HapII CCGG 3 cut(s) 306, 665, 744
HgaI GACGC 4 cut(s) 101, 515, 676, 756
Hin1I GRCGYC 1 cut(s) 748
Hin1II CATG 3 cut(s) 58, 244, 603
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 4 cut(s) 223, 873, 1028, 1081
HpaII CCGG 3 cut(s) 306, 665, 744
HphI GGTGA 4 cut(s) 149, 389, 446, 862
Hpy188I TCNGA 5 cut(s) 189, 739, 1051, 1068, 1080
Hpy99I CGWCG 2 cut(s) 117, 173
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 3 cut(s) 367, 377, 700
HpyCH4IV ACGT 1 cut(s) 1073
HpyCH4V TGCA 3 cut(s) 14, 565, 932
HpyF3I CTNAG 7 cut(s) 39, 227, 673, 795, 816, 1065, 1077
HpySE526I ACGT 1 cut(s) 1073
Hsp92I GRCGYC 1 cut(s) 748
Hsp92II CATG 3 cut(s) 58, 244, 603
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 6 cut(s) 211, 237, 300, 768, 886, 901
LmnI GCTCC 3 cut(s) 133, 698, 926
LpnPI CCDG 9 cut(s) 86, 214, 311, 319, 331, 678, 757, 975, 1017
Lsp1109I GCAGC 4 cut(s) 26, 792, 908, 916
LweI GCATC 1 cut(s) 322
MaeI CTAG 2 cut(s) 120, 482
MaeII ACGT 1 cut(s) 1073
MaeIII GTNAC 5 cut(s) 30, 352, 377, 452, 700
MalI GATC 6 cut(s) 213, 239, 302, 770, 888, 903
MbiI CCGCTC 1 cut(s) 470
MboI GATC 6 cut(s) 211, 237, 300, 768, 886, 901
MboII GAAGA 8 cut(s) 55, 81, 84, 117, 421, 613, 882, 923
MflI RGATCY 2 cut(s) 300, 768
MhlI GDGCHC 1 cut(s) 130
MmeI TCCRAC 3 cut(s) 349, 566, 904
MroXI GAANNNNTTC 1 cut(s) 88
MseI TTAA 3 cut(s) 461, 732, 863
MspA1I CMGCKG 1 cut(s) 899
MspCI CTTAAG 1 cut(s) 460
MspI CCGG 3 cut(s) 306, 665, 744
MvnI CGCG 1 cut(s) 868
NcoI CCATGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 785
NdeII GATC 6 cut(s) 211, 237, 300, 768, 886, 901
NlaIII CATG 3 cut(s) 58, 244, 603
NmuCI GTSAC 2 cut(s) 377, 452
NspI RCATGY 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 4 cut(s) 223, 873, 1028, 1081
Pfl23II CGTACG 1 cut(s) 20
PflFI GACNNNGTC 2 cut(s) 383, 1072
PkrI GCNGC 5 cut(s) 16, 472, 782, 898, 931
PspEI GGTNACC 2 cut(s) 377, 452
PspLI CGTACG 1 cut(s) 20
PspPI GGNCC 2 cut(s) 442, 539
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 2 cut(s) 300, 768
PsyI GACNNNGTC 2 cut(s) 383, 1072
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 3 cut(s) 22, 149, 271
RsaNI GTAC 3 cut(s) 21, 148, 270
SaqAI TTAA 3 cut(s) 461, 732, 863
SatI GCNGC 5 cut(s) 15, 471, 781, 897, 930
Sau3AI GATC 6 cut(s) 211, 237, 300, 768, 886, 901
Sau96I GGNCC 2 cut(s) 442, 539
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 930
SinI GGWCC 2 cut(s) 442, 539
SmlI CTYRAG 5 cut(s) 60, 79, 403, 460, 554
SmoI CTYRAG 5 cut(s) 60, 79, 403, 460, 554
SsiI CCGC 3 cut(s) 399, 470, 473
SspMI CTAG 2 cut(s) 120, 482
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 3 cut(s) 367, 377, 700
TaiI ACGT 1 cut(s) 1076
TaqI TCGA 6 cut(s) 5, 168, 466, 891, 906, 1008
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 4 cut(s) 223, 873, 1028, 1081
Tru1I TTAA 3 cut(s) 461, 732, 863
Tru9I TTAA 3 cut(s) 461, 732, 863
TscAI CASTG 3 cut(s) 43, 214, 325
TseFI GTSAC 2 cut(s) 377, 452
TseI GCWGC 4 cut(s) 14, 780, 896, 929
Tsp45I GTSAC 2 cut(s) 377, 452
TspDTI ATGAA 3 cut(s) 613, 924, 1041
TspRI CASTG 3 cut(s) 43, 214, 325
Tth111I GACNNNGTC 2 cut(s) 383, 1072
Vha464I CTTAAG 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 442, 539
XbaI TCTAGA 1 cut(s) 119
XceI RCATGY 1 cut(s) 603
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 2 cut(s) 120, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.