RLG00000034809

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002844
Physical Location & Seq
Reverse (-)
54941697 .. 54942555
859 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034809

Sequence Viewer

Length: 339 bp
ATGGCTCTTGTCGCACTGATCTTGAGCAAAGCAGCAGACTATTTGGTAGAGAGGCAAGAAATGTTGCTTACCAAAGCCCTGCATGGGCATAAGAAGTTTGGTCCAATTGAAGTCCATAAAGAAGTCGAGCCTAAGAGTGTGAGGTACAAATGTGTTCTGGTCTTTATCAGTCTTAAGAAGGCTTCTGGCACGATCTTCCTAGCTACAGTTGAGAAATTCGACTTTGTGGATGCATTTTATTGCGTTTGTTGCACCATCACAAGCCTGGGGCCGGGTATGGAGATAAGAGCTTCTCAACTGAAGCCGGACGTGTTTTCGCAGTGCAGACCGCCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

113

Amino Acids

12.48

Weight (kDa)

8.85

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 84, 271
AflII CTTAAG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 110
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 2 cut(s) 203, 290
AluI AGCT 2 cut(s) 203, 290
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 101, 269
AsuC2I CCSGG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 101
BaeI ACNNNNGTAYC 2 cut(s) 136, 169
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 1 cut(s) 273
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 266, 273
Bme18I GGWCC 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 101, 269
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 266, 273
BmsI GCATC 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 271
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 84, 271
BseXI GCAGC 1 cut(s) 44
BshFI GGCC 1 cut(s) 271
BsiSI CCGG 2 cut(s) 272, 305
BslI CCNNNNNNNGG 2 cut(s) 84, 271
BsnI GGCC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 18, 192
BspACI CCGC 1 cut(s) 329
BspANI GGCC 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 270
BspTI CTTAAG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 18, 192
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 208
BstAFI CTTAAG 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 2 cut(s) 21, 195
BstMBI GATC 2 cut(s) 18, 192
BstMWI GCNNNNNNNGC 2 cut(s) 11, 249
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 264, 271
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 271
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 14, 326
Cfr13I GGNCC 2 cut(s) 101, 269
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 83
CviJI RGCY 9 cut(s) 5, 77, 130, 182, 203, 264, 271, 290, 304
CviKI_1 RGCY 9 cut(s) 5, 77, 130, 182, 203, 264, 271, 290, 304
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 20, 194
DpnII GATC 2 cut(s) 18, 192
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 1 cut(s) 86
FaiI YATR 4 cut(s) 84, 90, 117, 278
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 271
HapII CCGG 2 cut(s) 272, 305
Hin1II CATG 1 cut(s) 86
HpaII CCGG 2 cut(s) 272, 305
Hpy188III TCNNGA 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 4 cut(s) 82, 233, 252, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 249
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 2 cut(s) 18, 192
LpnPI CCDG 7 cut(s) 92, 143, 171, 251, 278, 285, 318
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 309
MalI GATC 2 cut(s) 20, 194
MboI GATC 2 cut(s) 18, 192
MboII GAAGA 1 cut(s) 187
MfeI CAATTG 1 cut(s) 105
MluCI AATT 2 cut(s) 105, 215
MnlI CCTC 2 cut(s) 45, 135
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 2 cut(s) 174, 337
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 272, 305
MspR9I CCNGG 2 cut(s) 266, 273
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 11, 249
NciI CCSGG 1 cut(s) 273
NdeII GATC 2 cut(s) 18, 192
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 235
PkrI GCNGC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 101, 269
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 174, 337
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 18, 192
Sau96I GGNCC 2 cut(s) 101, 269
ScrFI CCNGG 2 cut(s) 266, 273
SetI ASST 4 cut(s) 146, 205, 292, 312
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 22, 173
SmoI CTYRAG 2 cut(s) 22, 173
Sse9I AATT 2 cut(s) 105, 215
SsiI CCGC 1 cut(s) 329
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 264, 271
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 126, 219
TasI AATT 2 cut(s) 105, 215
Tru1I TTAA 2 cut(s) 174, 337
Tru9I TTAA 2 cut(s) 174, 337
TscAI CASTG 2 cut(s) 21, 326
TseI GCWGC 1 cut(s) 32
TspRI CASTG 2 cut(s) 21, 326
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XspI CTAG 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.