Rorug05G0283000

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002844
Physical Location & Seq
Reverse (-)
32405548 .. 32405898
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0283000.1

Sequence Viewer

Length: 351 bp
ATGGAGCGAAGGGAGGTTACAGAGTGGAGAGAGGTGACGAAGCGGAGGGAGGTTACGGAGCGAAGACAGGTTATGATGCGAATGGAGGTCTCCGCTTCGTCATCGTCAGATCAAGGGACTAATAGAAGCTTCTCGATCATCCTCGGTTCAGCTCCTGCTCCAGTCCGCATTAATTGTTGGGTCAGATTCCTAAACAGAATTTTTCCTACCAACAGTGCTACAGTAGGTTTTGTCTTCAGGAATGCTGAGGGTCTTCCCGTTTTAGCAGCATGTAAAATTCTTCCTCAAGTGGATGTTCTAGTCACTGAGGGCCTTTCTCTCAAGGCTGGTCTATGCAGCCTTACTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

116

Amino Acids

12.97

Weight (kDa)

9.86

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 43, 93, 166
AcsI RAATTY 2 cut(s) 198, 276
AcuI CTGAAG 1 cut(s) 220
AluBI AGCT 2 cut(s) 129, 152
AluI AGCT 2 cut(s) 129, 152
Alw26I GTCTC 1 cut(s) 94
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 266, 336
ApoI RAATTY 2 cut(s) 198, 276
AseI ATTAAT 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 46
BarI GAAGNNNNNNTAC 1 cut(s) 33
BbsI GAAGAC 3 cut(s) 70, 226, 245
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 2 cut(s) 267, 337
BlsI GCNGC 2 cut(s) 268, 338
BmgT120I GGNCC 1 cut(s) 310
BmsI GCATC 1 cut(s) 66
BpiI GAAGAC 3 cut(s) 70, 226, 245
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 270, 305
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 138, 298
BseMII CTCAG 2 cut(s) 237, 297
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 278
BshFI GGCC 1 cut(s) 312
BslFI GGGAC 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 312
Bso31I GGTCTC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 109, 135
BspACI CCGC 3 cut(s) 43, 93, 166
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 238, 298
BspTNI GGTCTC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 109, 135
Bst4CI ACNGT 2 cut(s) 215, 223
BstDEI CTNAG 2 cut(s) 246, 306
BstF5I GGATG 2 cut(s) 138, 298
BstKTI GATC 2 cut(s) 112, 138
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 2 cut(s) 109, 135
BstNSI RCATGY 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 3 cut(s) 70, 226, 245
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 138, 298
BtsIMutI CAGTG 2 cut(s) 220, 303
CaiI CAGNNNCTG 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 310
CviAII CATG 1 cut(s) 270
CviJI RGCY 5 cut(s) 129, 152, 312, 326, 339
CviKI_1 RGCY 5 cut(s) 129, 152, 312, 326, 339
DdeI CTNAG 2 cut(s) 246, 306
DpnI GATC 2 cut(s) 111, 137
DpnII GATC 2 cut(s) 109, 135
Eco31I GGTCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 310
FaeI CATG 1 cut(s) 273
FaiI YATR 4 cut(s) 74, 271, 334, 349
FaqI GGGAC 1 cut(s) 130
FatI CATG 1 cut(s) 269
Fnu4HI GCNGC 2 cut(s) 267, 337
FokI GGATG 2 cut(s) 125, 305
Fsp4HI GCNGC 2 cut(s) 267, 337
FspBI CTAG 1 cut(s) 299
GluI GCNGC 2 cut(s) 267, 337
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 312
Hin1II CATG 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 1 cut(s) 186
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 109, 185
Hpy188III TCNNGA 2 cut(s) 133, 238
HpyAV CCTTC 1 cut(s) 3
HpyCH4III ACNGT 2 cut(s) 215, 223
HpyCH4V TGCA 1 cut(s) 336
HpyF3I CTNAG 2 cut(s) 246, 306
Hsp92II CATG 1 cut(s) 273
Kzo9I GATC 2 cut(s) 109, 135
LmnI GCTCC 4 cut(s) 4, 58, 157, 163
LpnPI CCDG 5 cut(s) 53, 168, 174, 223, 312
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 4 cut(s) 16, 34, 52, 301
MalI GATC 2 cut(s) 111, 137
MboI GATC 2 cut(s) 109, 135
MboII GAAGA 4 cut(s) 75, 226, 245, 272
MluCI AATT 3 cut(s) 172, 198, 276
MnlI CCTC 9 cut(s) 7, 25, 39, 43, 79, 152, 241, 294, 301
MseI TTAA 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 247
NdeII GATC 2 cut(s) 109, 135
NlaIII CATG 1 cut(s) 273
NmuCI GTSAC 2 cut(s) 34, 301
NspI RCATGY 1 cut(s) 273
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 268, 338
PshBI ATTAAT 1 cut(s) 171
PspPI GGNCC 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 267, 337
Sau3AI GATC 2 cut(s) 109, 135
Sau96I GGNCC 1 cut(s) 310
SetI ASST 8 cut(s) 18, 36, 54, 72, 90, 131, 154, 229
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 285, 320
SmoI CTYRAG 2 cut(s) 285, 320
Sse9I AATT 3 cut(s) 172, 198, 276
SsiI CCGC 3 cut(s) 43, 93, 166
SspMI CTAG 1 cut(s) 299
TaaI ACNGT 2 cut(s) 215, 223
TaqI TCGA 1 cut(s) 134
TasI AATT 3 cut(s) 172, 198, 276
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 220, 310
TseFI GTSAC 2 cut(s) 34, 301
TseI GCWGC 2 cut(s) 266, 336
Tsp45I GTSAC 2 cut(s) 34, 301
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 220, 310
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 2 cut(s) 198, 276
XceI RCATGY 1 cut(s) 273
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.