MD11G1200700.v1.1

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002844
Physical Location & Seq
Forward (+)
28985162 .. 28994815
9654 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1200700.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGGCCTCGAATGAGAGTAGATCCTTGGTTTCAGGACTAATAGATCCTTTATCTCAAACAAATAAAAGGAATGCTCCAAAGGGTAGAAGAATTCGCCGTTGTAGAAGTGCTCCTCTTTCAGAGTATATAAGGTTAGAGGCAGGCTTTGCCTCAGGTCCACGTACTGAATCCTTCTGTGGAAATATACACCCAAACTTTCTCTTTGTAGCTGCATTCTTGACTGTCTACTTAGGCATAGGAACTTTATGTTTCTACCTCGTCAGGCACCAGCTCAAGGGAGAGAAGACAAATGGACTTCTTGATGCTGTTTATTTCTGTATTGTGACAATGACCACTGTCGGATATGGAGACCTTGTACCAAACAGTGTTCTTTCAAAACTACTGGCTTGTGCTTTCGTCTTTTCAGGAATGGCTCTCGTTGGGATGATCTTGAGCAAAGCAGCTGACTATTTGGTAGAGAAGCAGGAATTATTGCTTGTTAAAGCCTTACATATGAGTAAAAAAGTTGGGCATTTTGAAATTCTTAAAGATATTGAGACTAACAGTCTGAGGTACAAATGTATTGTGATCTTTATCCTTCTTTTGCTGCTCATAATTGGTGGCACAATCTTCCTAGCTATTGTTGAGAAATTGAGCCTTGTGGATGCATTCTATTGCGTTTGTTGTACCATCACAACTCTGGGATATGGAGATAAGAGCTTTTCGACTCAAGCAGGGCGTGTTTTTGCAGTATTCTGGATATTGACAGGTACCATTTGTTTAGCTCAGTTTTTCCTCTACATTGCCGAGCTAAATGCCCAGAGCAGACAACGGGCATTAGTAAAGTTGATTCTTACTCGTAGGATGGCCAACGTAGATTTGGAGGCAGCTGATCTTGACGATGATGGCTCTGTTGGGGCTGCTGAATTTGTCATATACAAGCTCAAAGAGATGGGGAAGATTAGCCAGGAAGATATTAGACTTGTAATGGAGGAGTTTGAAGATCTTGATGTTGATCAGTCAGGAACGTTGTCAACATCAGATATAATGCTTTCGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

347

Amino Acids

38.29

Weight (kDa)

6.89

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 73 - 152 8.6e-18 Ion channel
Ion_trans_2 PF07885 192 - 264 1.1e-16 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 749
AccB1I GGYRCC 2 cut(s) 264, 749
AccI GTMKAC 1 cut(s) 225
AclI AACGTT 1 cut(s) 1007
AclWI GGATC 2 cut(s) 15, 38
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 3 cut(s) 90, 519, 905
AfaI GTAC 5 cut(s) 163, 357, 554, 667, 751
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 3 cut(s) 375, 518, 980
AhdI GACNNNNNGTC 1 cut(s) 543
AjnI CCWGG 1 cut(s) 945
AluBI AGCT 9 cut(s) 209, 271, 443, 617, 699, 764, 790, 869, 922
AluI AGCT 9 cut(s) 209, 271, 443, 617, 699, 764, 790, 869, 922
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 2 cut(s) 342, 530
AlwI GGATC 2 cut(s) 15, 38
AoxI GGCC 2 cut(s) 3, 846
ApeKI GCWGC 5 cut(s) 209, 440, 586, 866, 899
ApoI RAATTY 3 cut(s) 90, 519, 905
Asp718I GGTACC 1 cut(s) 749
AspS9I GGNCC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 151
BaeI ACNNNNGTAYC 2 cut(s) 544, 577
BalI TGGCCA 1 cut(s) 848
BanI GGYRCC 2 cut(s) 264, 749
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 5 cut(s) 196, 452, 573, 878, 886
BccI CCATC 4 cut(s) 677, 838, 878, 925
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 776, 810
BciT130I CCWGG 1 cut(s) 947
BclI TGATCA 1 cut(s) 994
BcoDI GTCTC 2 cut(s) 342, 530
BfaI CTAG 1 cut(s) 614
BglII AGATCT 1 cut(s) 982
BisI GCNGC 5 cut(s) 210, 441, 587, 867, 900
BlsI GCNGC 5 cut(s) 211, 442, 588, 868, 901
Bme1390I CCNGG 1 cut(s) 947
Bme18I GGWCC 1 cut(s) 155
BmeRI GACNNNNNGTC 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 266, 751
BmrFI CCNGG 1 cut(s) 947
BmsI GCATC 2 cut(s) 292, 634
BoxI GACNNNNGTC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 290
BpuEI CTTGAG 3 cut(s) 257, 451, 693
BsaAI YACGTR 1 cut(s) 161
BsaBI GATNNNNATC 2 cut(s) 572, 993
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 387
Bse21I CCTNAGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 780
Bse8I GATNNNNATC 2 cut(s) 572, 993
BseBI CCWGG 1 cut(s) 947
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 3 cut(s) 429, 649, 849
BseJI GATNNNNATC 2 cut(s) 572, 993
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 3 cut(s) 165, 539, 779
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 2 cut(s) 102, 986
BseXI GCAGC 5 cut(s) 196, 452, 573, 878, 886
BshFI GGCC 2 cut(s) 5, 848
BshNI GGYRCC 2 cut(s) 264, 749
BsiHKAI GWGCWC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 342, 530
BsmI GAATGC 3 cut(s) 76, 212, 647
BsnI GGCC 2 cut(s) 5, 848
Bso31I GGTCTC 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 7 cut(s) 20, 43, 426, 567, 871, 982, 994
BspANI GGCC 2 cut(s) 5, 848
BspCNI CTCAG 3 cut(s) 164, 540, 778
BspLI GGNNCC 2 cut(s) 266, 751
BspPI GGATC 2 cut(s) 15, 38
BspT107I GGYRCC 2 cut(s) 264, 749
BspTNI GGTCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 780
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 7 cut(s) 20, 43, 426, 567, 871, 982, 994
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 947
Bst4CI ACNGT 4 cut(s) 223, 337, 365, 545
BstAPI GCANNNNNTGC 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 4 cut(s) 151, 229, 548, 765
BstF5I GGATG 3 cut(s) 429, 649, 849
BstKTI GATC 7 cut(s) 23, 46, 429, 570, 874, 985, 997
BstMAI GTCTC 2 cut(s) 342, 530
BstMBI GATC 7 cut(s) 20, 43, 426, 567, 871, 982, 994
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 947
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 945
BstV1I GCAGC 5 cut(s) 196, 452, 573, 878, 886
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 3 cut(s) 20, 43, 982
BstYI RGATCY 3 cut(s) 20, 43, 982
Bsu36I CCTNAGG 1 cut(s) 151
BsuRI GGCC 2 cut(s) 5, 848
BtsCI GGATG 3 cut(s) 429, 649, 849
BtsIMutI CAGTG 2 cut(s) 333, 370
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 5 cut(s) 162, 356, 553, 666, 750
CviQI GTAC 5 cut(s) 162, 356, 553, 666, 750
DdeI CTNAG 4 cut(s) 151, 229, 548, 765
DpnI GATC 7 cut(s) 22, 45, 428, 569, 873, 984, 996
DpnII GATC 7 cut(s) 20, 43, 426, 567, 871, 982, 994
DriI GACNNNNNGTC 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 846
Eam1105I GACNNNNNGTC 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 945
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 24
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 994
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 210, 441, 587, 867, 900
FokI GGATG 3 cut(s) 436, 656, 856
Fsp4HI GCNGC 5 cut(s) 210, 441, 587, 867, 900
FspBI CTAG 1 cut(s) 614
GluI GCNGC 5 cut(s) 210, 441, 587, 867, 900
HaeIII GGCC 2 cut(s) 5, 848
HincII GTYRAC 1 cut(s) 1014
HindII GTYRAC 1 cut(s) 1014
HinfI GANTC 3 cut(s) 167, 706, 829
Hpy166II GTNNAC 3 cut(s) 158, 226, 1014
Hpy188I TCNGA 4 cut(s) 121, 341, 549, 1021
Hpy188III TCNNGA 9 cut(s) 33, 217, 299, 405, 430, 736, 875, 986, 1002
Hpy8I GTNNAC 3 cut(s) 158, 226, 1014
HpyAV CCTTC 2 cut(s) 181, 587
HpyCH4III ACNGT 4 cut(s) 223, 337, 365, 545
HpyCH4IV ACGT 3 cut(s) 160, 852, 1007
HpyCH4V TGCA 3 cut(s) 212, 647, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 4 cut(s) 151, 229, 548, 765
HpySE526I ACGT 3 cut(s) 160, 852, 1007
KpnI GGTACC 1 cut(s) 753
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 7 cut(s) 20, 43, 426, 567, 871, 982, 994
LmnI GCTCC 2 cut(s) 79, 115
Lsp1109I GCAGC 5 cut(s) 196, 452, 573, 878, 886
LweI GCATC 2 cut(s) 292, 634
MaeI CTAG 1 cut(s) 614
MaeII ACGT 3 cut(s) 160, 852, 1007
MaeIII GTNAC 1 cut(s) 322
MalI GATC 7 cut(s) 22, 45, 428, 569, 873, 984, 996
MboI GATC 7 cut(s) 20, 43, 426, 567, 871, 982, 994
MboII GAAGA 6 cut(s) 99, 295, 601, 949, 962, 992
MflI RGATCY 3 cut(s) 20, 43, 982
MhlI GDGCHC 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 6 cut(s) 90, 467, 519, 594, 629, 905
MluNI TGGCCA 1 cut(s) 848
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 9 cut(s) 16, 123, 130, 160, 266, 543, 785, 856, 964
Mox20I TGGCCA 1 cut(s) 848
Mph1103I ATGCAT 1 cut(s) 649
MscI TGGCCA 1 cut(s) 848
MseI TTAA 2 cut(s) 480, 525
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 2 cut(s) 443, 869
MspR9I CCNGG 1 cut(s) 947
Mva1269I GAATGC 3 cut(s) 76, 212, 647
MvaI CCWGG 1 cut(s) 947
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeI CATATG 1 cut(s) 492
NdeII GATC 7 cut(s) 20, 43, 426, 567, 871, 982, 994
NlaIV GGNNCC 2 cut(s) 266, 751
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 649
PctI GAATGC 3 cut(s) 76, 212, 647
PfeI GAWTC 2 cut(s) 167, 829
PkrI GCNGC 5 cut(s) 211, 442, 588, 868, 901
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
Ppu21I YACGTR 1 cut(s) 161
PshAI GACNNNNGTC 1 cut(s) 335
Psp1406I AACGTT 1 cut(s) 1007
Psp6I CCWGG 1 cut(s) 945
PspGI CCWGG 1 cut(s) 945
PspN4I GGNNCC 2 cut(s) 266, 751
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 3 cut(s) 20, 43, 982
PvuII CAGCTG 2 cut(s) 443, 869
RsaI GTAC 5 cut(s) 163, 357, 554, 667, 751
RsaNI GTAC 5 cut(s) 162, 356, 553, 666, 750
SaqAI TTAA 2 cut(s) 480, 525
SatI GCNGC 5 cut(s) 210, 441, 587, 867, 900
Sau3AI GATC 7 cut(s) 20, 43, 426, 567, 871, 982, 994
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 1 cut(s) 947
SduI GDGCHC 1 cut(s) 112
SfaNI GCATC 2 cut(s) 292, 634
SinI GGWCC 1 cut(s) 155
SmlI CTYRAG 3 cut(s) 272, 430, 708
SmoI CTYRAG 3 cut(s) 272, 430, 708
Sse9I AATT 6 cut(s) 90, 467, 519, 594, 629, 905
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 945
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 4 cut(s) 223, 337, 365, 545
TaiI ACGT 3 cut(s) 163, 855, 1010
TaqI TCGA 2 cut(s) 8, 704
TasI AATT 6 cut(s) 90, 467, 519, 594, 629, 905
TfiI GAWTC 2 cut(s) 167, 829
Tru1I TTAA 2 cut(s) 480, 525
Tru9I TTAA 2 cut(s) 480, 525
TscAI CASTG 2 cut(s) 340, 370
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 5 cut(s) 209, 440, 586, 866, 899
Tsp45I GTSAC 1 cut(s) 322
TspRI CASTG 2 cut(s) 340, 370
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 3 cut(s) 90, 519, 905
XcmI CCANNNNNNNNNTGG 2 cut(s) 676, 856
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.