Rw0G009570

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00372
OG0002844
Physical Location & Seq
Forward (+)
33157 .. 34306
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009570.1

Sequence Viewer

Length: 1032 bp
ATGAGACCATCATTGCGTCCAGGAGATCCTTCAGCTCAAACAAATGCAAGGAATGGCCATGGTCCAAAGAGTAGAATATATCGTCGTACTAGAAGTGCCCCTCTTGCTAATTACGGAGCCGTAGAGGCAAAATGCGTTGCCGCAGTTCAACAACGTTCTCAATCCATTATGCACTTGAGTTTTGTTAAAGTAGCTATATTCTTGGCTGTCTACTTAGGAGTGGGAACTATGTGCTTCTACTTCGTCAGGCACCAGCTCGAGGGAGACAAGACAAAACCAGTTCTTGATGCTGTTTATTTCTGTGTTGTGACCATGACCACTCTCGGATATGGAGACCTAGTACCCAACAGCACACTAGCGAAACTACTGGCTTGTGCTTTTGTCTTTACAGGAATGGCTCTTGTCGCATTGATCTTGAGCAAAGCAGCAGACTATTTGGTAGAGAGGCAAGAAATGTTTCTTGCCAAAGCCCTGCATGGGCATCAGAAGTTTGGTCCAATTGAAGTTCATAAAGAAGTCGAGCCTAAGAGTGTGAGGTACAAATGTGTTACGGTCTTTATCCTTCTTTTGGTTCTTATGGCTTCTGGCACGATCTTCCTAGCTACAGTTGAGAAATTCGACTTTGTGGATGCATTTTATTGCGTTTGTTGCACCATTACAAGCCTGGGGTATGGAGATAAGAGCTTCTCAACTGAAGCCGGGCGTGTTTTTGCAGTGTTCTGGATATTGGCAAGTACCACCTGTTTGGCTCAGTTTTTCCTCTACATAGCTGAGCTAAACACCCAGCATAGACAAAAGGCATTGGTTAACTTGGTTCTTACTCGTGAAGTTACCAAAGTTGATTTGGAGGCAGCTGATCTTGATGATGATGGGGTTGTTGGGTCTGCTGAGTTTGTCATATATAAACTCAAAGAGATGGGAAAGATTAACCAAGAAGATGTCAGACTTGTAATGAAGGAGTTTGAAGCTCTTGATGTCGACCAGTCTGGAACCTTGTCGATTAAAGATGTAACGCTTGCTCAATCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

343

Amino Acids

37.91

Weight (kDa)

8.01

Isoelectric Point (pI)

27.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 68 - 147 1.5e-16 Ion channel
Ion_trans_2 PF07885 187 - 260 5.4e-15 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 249
AccI GTMKAC 2 cut(s) 210, 978
AciI CCGC 1 cut(s) 141
AclI AACGTT 1 cut(s) 154
AclWI GGATC 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 2 cut(s) 15, 714
AfaI GTAC 4 cut(s) 88, 342, 539, 736
AfiI CCNNNNNNNGG 3 cut(s) 259, 477, 568
AgsI TTSAA 3 cut(s) 149, 503, 965
AjnI CCWGG 2 cut(s) 19, 663
AluBI AGCT 9 cut(s) 35, 194, 256, 602, 684, 770, 775, 854, 968
AluI AGCT 9 cut(s) 35, 194, 256, 602, 684, 770, 775, 854, 968
Alw26I GTCTC 2 cut(s) 258, 327
AlwI GGATC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 425, 851
ApoI RAATTY 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 2 cut(s) 62, 494
AsuC2I CCSGG 1 cut(s) 700
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 2 cut(s) 62, 494
BaeGI GKGCMC 1 cut(s) 100
BaeI ACNNNNGTAYC 2 cut(s) 529, 562
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 249
BauI CACGAG 1 cut(s) 822
BbvI GCAGC 2 cut(s) 437, 863
BccI CCATC 3 cut(s) 16, 863, 910
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 21, 665
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 2 cut(s) 258, 327
BfaI CTAG 4 cut(s) 90, 338, 356, 599
BfmI CTRYAG 1 cut(s) 603
BglI GCCNNNNNGGC 1 cut(s) 125
BisI GCNGC 3 cut(s) 141, 426, 852
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 3 cut(s) 142, 427, 853
Bme1390I CCNGG 3 cut(s) 21, 665, 700
Bme18I GGWCC 2 cut(s) 62, 494
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 62, 494
BmiI GGNNCC 3 cut(s) 118, 251, 991
BmrFI CCNGG 3 cut(s) 21, 665, 700
BmsI GCATC 3 cut(s) 277, 490, 619
Bpu1102I GCTNAGC 1 cut(s) 771
BpuEI CTTGAG 2 cut(s) 196, 436
BpuMI CCSGG 1 cut(s) 700
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 58, 664
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 477, 568
Bse1I ACTGG 3 cut(s) 278, 372, 982
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 2 cut(s) 21, 665
BseDI CCNNGG 2 cut(s) 58, 664
BseGI GGATG 1 cut(s) 634
BseLI CCNNNNNNNGG 3 cut(s) 259, 477, 568
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 3 cut(s) 762, 764, 879
BseNI ACTGG 3 cut(s) 278, 372, 982
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 2 cut(s) 437, 863
BseYI CCCAGC 1 cut(s) 783
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 1 cut(s) 699
BslI CCNNNNNNNGG 3 cut(s) 259, 477, 568
BsmAI GTCTC 2 cut(s) 258, 327
BsnI GGCC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 4 cut(s) 25, 411, 591, 856
Bsp1720I GCTNAGC 1 cut(s) 771
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 1 cut(s) 141
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 3 cut(s) 763, 763, 880
BspLI GGNNCC 3 cut(s) 118, 251, 991
BspPI GGATC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 3 cut(s) 278, 372, 982
BssECI CCNNGG 2 cut(s) 58, 664
BssMI GATC 4 cut(s) 25, 411, 591, 856
BssSI CACGAG 1 cut(s) 822
BssT1I CCWWGG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 2 cut(s) 21, 665
Bst4CI ACNGT 2 cut(s) 553, 607
BstC8I GCNNGC 1 cut(s) 1017
BstDEI CTNAG 5 cut(s) 214, 525, 750, 771, 888
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 634
BstKTI GATC 4 cut(s) 28, 414, 594, 859
BstMAI GTCTC 2 cut(s) 258, 327
BstMBI GATC 4 cut(s) 25, 411, 591, 856
BstMWI GCNNNNNNNGC 4 cut(s) 104, 125, 404, 648
BstNI CCWGG 2 cut(s) 21, 665
BstSCI CCNGG 3 cut(s) 19, 663, 698
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 2 cut(s) 437, 863
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 634
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 1 cut(s) 720
Cac8I GCNNGC 1 cut(s) 1017
Cfr13I GGNCC 2 cut(s) 62, 494
CseI GACGC 1 cut(s) 5
Csp6I GTAC 4 cut(s) 87, 341, 538, 735
CviAII CATG 3 cut(s) 59, 313, 476
CviQI GTAC 4 cut(s) 87, 341, 538, 735
DdeI CTNAG 5 cut(s) 214, 525, 750, 771, 888
DpnI GATC 4 cut(s) 27, 413, 593, 858
DpnII GATC 4 cut(s) 25, 411, 591, 856
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 62, 494
Eco57I CTGAAG 2 cut(s) 15, 714
Eco88I CYCGRG 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 19, 663
EcoT14I CCWWGG 1 cut(s) 58
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 62, 316, 479
FatI CATG 3 cut(s) 58, 312, 475
FblI GTMKAC 2 cut(s) 210, 978
Fnu4HI GCNGC 3 cut(s) 141, 426, 852
FokI GGATG 1 cut(s) 641
Fsp4HI GCNGC 3 cut(s) 141, 426, 852
FspBI CTAG 4 cut(s) 90, 338, 356, 599
GluI GCNGC 3 cut(s) 141, 426, 852
GsaI CCCAGC 1 cut(s) 787
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 699
HgaI GACGC 1 cut(s) 5
Hin1II CATG 3 cut(s) 62, 316, 479
HincII GTYRAC 2 cut(s) 808, 979
HindII GTYRAC 2 cut(s) 808, 979
HpaI GTTAAC 1 cut(s) 808
HpaII CCGG 1 cut(s) 699
Hpy166II GTNNAC 3 cut(s) 211, 808, 979
Hpy188I TCNGA 3 cut(s) 326, 486, 944
Hpy188III TCNNGA 7 cut(s) 284, 415, 721, 824, 860, 971, 987
Hpy8I GTNNAC 3 cut(s) 211, 808, 979
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 3 cut(s) 39, 572, 949
HpyCH4III ACNGT 2 cut(s) 553, 607
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 6 cut(s) 47, 172, 475, 632, 651, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 125, 404, 648
HpyF3I CTNAG 5 cut(s) 214, 525, 750, 771, 888
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 3 cut(s) 62, 316, 479
KspAI GTTAAC 1 cut(s) 808
Kzo9I GATC 4 cut(s) 25, 411, 591, 856
LmnI GCTCC 1 cut(s) 116
Lsp1109I GCAGC 2 cut(s) 437, 863
LweI GCATC 3 cut(s) 277, 490, 619
MaeI CTAG 4 cut(s) 90, 338, 356, 599
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 4 cut(s) 307, 547, 829, 1009
MalI GATC 4 cut(s) 27, 413, 593, 858
MboI GATC 4 cut(s) 25, 411, 591, 856
MboII GAAGA 2 cut(s) 586, 947
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 100
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 3 cut(s) 109, 498, 614
MluNI TGGCCA 1 cut(s) 57
MnlI CCTC 7 cut(s) 111, 118, 253, 438, 528, 770, 841
Mox20I TGGCCA 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 634
MroXI GAANNNNTTC 1 cut(s) 456
MscI TGGCCA 1 cut(s) 57
MseI TTAA 5 cut(s) 186, 807, 927, 1002, 1030
Msp20I TGGCCA 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 854
MspI CCGG 1 cut(s) 699
MspR9I CCNGG 3 cut(s) 21, 665, 700
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 2 cut(s) 21, 665
MwoI GCNNNNNNNGC 4 cut(s) 104, 125, 404, 648
NciI CCSGG 1 cut(s) 700
NcoI CCATGG 1 cut(s) 58
NdeII GATC 4 cut(s) 25, 411, 591, 856
NlaIII CATG 3 cut(s) 62, 316, 479
NlaIV GGNNCC 3 cut(s) 118, 251, 991
NmuCI GTSAC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 634
PaeR7I CTCGAG 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 456
PfoI TCCNGGA 1 cut(s) 19
PkrI GCNGC 3 cut(s) 142, 427, 853
Psp1406I AACGTT 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 19, 663
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 2 cut(s) 19, 663
PspN4I GGNNCC 3 cut(s) 118, 251, 991
PspPI GGNCC 2 cut(s) 62, 494
PspXI VCTCGAGB 1 cut(s) 257
PsuI RGATCY 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 4 cut(s) 88, 342, 539, 736
RsaNI GTAC 4 cut(s) 87, 341, 538, 735
SalI GTCGAC 1 cut(s) 977
SaqAI TTAA 5 cut(s) 186, 807, 927, 1002, 1030
SatI GCNGC 3 cut(s) 141, 426, 852
Sau3AI GATC 4 cut(s) 25, 411, 591, 856
Sau96I GGNCC 2 cut(s) 62, 494
ScrFI CCNGG 3 cut(s) 21, 665, 700
SduI GDGCHC 1 cut(s) 100
SfaNI GCATC 3 cut(s) 277, 490, 619
SfcI CTRYAG 1 cut(s) 603
Sfr274I CTCGAG 1 cut(s) 257
SinI GGWCC 2 cut(s) 62, 494
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 3 cut(s) 175, 257, 415
SmoI CTYRAG 3 cut(s) 175, 257, 415
Sse9I AATT 3 cut(s) 109, 498, 614
SsiI CCGC 1 cut(s) 141
SspMI CTAG 4 cut(s) 90, 338, 356, 599
StyD4I CCNGG 3 cut(s) 19, 663, 698
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 553, 607
TaiI ACGT 1 cut(s) 157
TaqI TCGA 5 cut(s) 258, 519, 618, 978, 998
TasI AATT 3 cut(s) 109, 498, 614
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 5 cut(s) 186, 807, 927, 1002, 1030
Tru9I TTAA 5 cut(s) 186, 807, 927, 1002, 1030
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 425, 851
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 2 cut(s) 497, 968
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 1 cut(s) 720
VpaK11BI GGWCC 2 cut(s) 62, 494
XapI RAATTY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 2 cut(s) 661, 841
XhoI CTCGAG 1 cut(s) 257
XmiI GTMKAC 2 cut(s) 210, 978
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 4 cut(s) 90, 338, 356, 599
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.