FvH4_3g29400

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002844
Physical Location & Seq
Reverse (-)
22489248 .. 22491198
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29400.t1

Sequence Viewer

Length: 1035 bp
ATGGCTAGCAATGGTATGAGACCGCCATTGCCTAGACCATATGCAAGAAATGGTCCACAGTGTAGAAAATATCGTCGTACCAGAAGTGCCCCTCTTGCTAATTACGGAGCCCTAGAGCCAAAATGCATGGCCTCATCAGACTCATCAGTTCAAGAACGTTCAAAATCTGTTATGCATTTGAGTTTTGTTAAAGTAGCTATATTCTTGACTGCCTACTTAGGATTGGGAACTCTTTGCTTCTCCCTCGCCGGGCACCAGCTCAAGGGGGAGAAGACAAATGTAGTTCTTGATGCTGTTTATTTCTGTGTTGTGACCATGACCACTCTCGGATATGGAGACATAGTGCCCAACAGCACTCTAGCGAAACTGCTGGCTTGCGCTTTTGTCTTCACAGGAATGGCTCTCGTCGCATTGATCTTGAGCAAAGCTGCAGACTATTTGGTAGAGAGGCAAGAACTATTGCTTATCAAAGCCTTGCATAGGCATCAAAAGTTTGGTGAGGTCGTTAATGAAGTCGAGACTAAGAGTGTGAGGTACAAATGTGTTACGGTCTTTATCATTCTTTTGGTTCTTATGGCTTGTGGCACGATCTTCCTTGCTACAGTTGAGAAATTGGACATTGTGGATGCATTTTATTGTGTTTGTTGCACCATCACAAGCCTTGGGTATGGAGATAAGAGTTTCTCGACTGAAGGCGGGCGGGTTTTTGCAGTGTTCTGGATACTGTCAAGTACTACCTGTTTAGCTCAGTTTTTCCTCTACGTTGCTGAGTTGAACACCCAACATAGACAAAAGGCTTTGGTTAACTTGATTCTTACTCGTGAAATAACCAAAGTTGATTTGGAGGCAGCTGATCTTGATGATGATGGAGTTGTTGGGGCTTCTGAGTTTGTCATATACAAACTCAAAGAGATGGGAAAGATTAACCAAGAAGATGTCAGACTTGTAATGAAGGAGTTTGAAGCTCTTGATGTCGACCGGGATGGATCCTTGTCGATTTCAGATGTAACGCTTGCTGAATCATCTACTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

345

Amino Acids

37.91

Weight (kDa)

6.93

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 68 - 148 2e-17 Ion channel
Ion_trans_2 PF07885 186 - 259 2.5e-13 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 975
AciI CCGC 3 cut(s) 23, 696, 700
AclI AACGTT 1 cut(s) 157
AclWI GGATC 2 cut(s) 981, 994
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 3 cut(s) 79, 536, 733
AfiI CCNNNNNNNGG 3 cut(s) 249, 262, 480
AgsI TTSAA 4 cut(s) 152, 162, 775, 962
AluBI AGCT 6 cut(s) 197, 259, 428, 746, 851, 965
AluI AGCT 6 cut(s) 197, 259, 428, 746, 851, 965
Alw26I GTCTC 3 cut(s) 13, 330, 512
AlwI GGATC 2 cut(s) 981, 994
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 428, 848
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 2 cut(s) 250, 980
AsuHPI GGTGA 1 cut(s) 509
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 3 cut(s) 91, 255, 348
BaeI ACNNNNGTAYC 2 cut(s) 526, 559
BamHI GGATCC 1 cut(s) 986
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 112
BauI CACGAG 1 cut(s) 819
BbsI GAAGAC 2 cut(s) 278, 379
BbvI GCAGC 2 cut(s) 415, 860
BccI CCATC 4 cut(s) 659, 860, 907, 977
BciVI GTATCC 1 cut(s) 714
BcnI CCSGG 2 cut(s) 250, 980
BcoDI GTCTC 3 cut(s) 13, 330, 512
BfaI CTAG 4 cut(s) 6, 33, 113, 359
BfmI CTRYAG 2 cut(s) 429, 600
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 2 cut(s) 429, 849
BlsI GCNGC 2 cut(s) 430, 850
BmcAI AGTACT 1 cut(s) 733
Bme1390I CCNGG 2 cut(s) 250, 980
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 3 cut(s) 109, 254, 988
BmrFI CCNGG 2 cut(s) 250, 980
BmsI GCATC 3 cut(s) 280, 493, 616
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 2 cut(s) 278, 379
BpuEI CTTGAG 2 cut(s) 245, 439
BpuMI CCSGG 2 cut(s) 250, 980
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 262, 480
Bse3DI GCAATG 2 cut(s) 16, 26
BseDI CCNNGG 1 cut(s) 661
BseGI GGATG 2 cut(s) 631, 988
BseLI CCNNNNNNNGG 3 cut(s) 249, 262, 480
BseMI GCAATG 2 cut(s) 16, 26
BseMII CTCAG 3 cut(s) 759, 761, 876
BseSI GKGCMC 3 cut(s) 91, 255, 348
BseXI GCAGC 2 cut(s) 415, 860
Bsh1285I CGRYCG 1 cut(s) 979
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 979
BsiSI CCGG 2 cut(s) 249, 979
BslI CCNNNNNNNGG 3 cut(s) 249, 262, 480
BsmAI GTCTC 3 cut(s) 13, 330, 512
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 4 cut(s) 91, 112, 255, 348
Bsp143I GATC 4 cut(s) 414, 588, 853, 986
BspACI CCGC 3 cut(s) 23, 696, 700
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 3 cut(s) 760, 760, 877
BspLI GGNNCC 3 cut(s) 109, 254, 988
BspMAI CTGCAG 1 cut(s) 433
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 2 cut(s) 981, 994
BspT107I GGYRCC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 16, 26
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 4 cut(s) 414, 588, 853, 986
BssSI CACGAG 1 cut(s) 819
BssT1I CCWWGG 1 cut(s) 661
Bst2BI CACGAG 1 cut(s) 819
Bst4CI ACNGT 4 cut(s) 60, 550, 604, 726
BstC8I GCNNGC 5 cut(s) 7, 372, 376, 698, 1014
BstDEI CTNAG 5 cut(s) 217, 522, 747, 768, 885
BstENI CCTNNNNNAGG 1 cut(s) 478
BstF5I GGATG 2 cut(s) 631, 988
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 4 cut(s) 417, 591, 856, 989
BstMAI GTCTC 3 cut(s) 13, 330, 512
BstMBI GATC 4 cut(s) 414, 588, 853, 986
BstMCI CGRYCG 1 cut(s) 979
BstMWI GCNNNNNNNGC 2 cut(s) 95, 407
BstSCI CCNGG 2 cut(s) 248, 978
BstSFI CTRYAG 2 cut(s) 429, 600
BstSLI GKGCMC 3 cut(s) 91, 255, 348
BstV1I GCAGC 2 cut(s) 415, 860
BstV2I GAAGAC 2 cut(s) 278, 379
BstX2I RGATCY 1 cut(s) 986
BstYI RGATCY 1 cut(s) 986
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 631, 988
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 65, 717
Cac8I GCNNGC 5 cut(s) 7, 372, 376, 698, 1014
CfoI GCGC 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 78, 535, 732
CviAII CATG 2 cut(s) 127, 316
CviQI GTAC 3 cut(s) 78, 535, 732
DdeI CTNAG 5 cut(s) 217, 522, 747, 768, 885
DpnI GATC 4 cut(s) 416, 590, 855, 988
DpnII GATC 4 cut(s) 414, 588, 853, 986
Eco130I CCWWGG 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 711
EcoNI CCTNNNNNAGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 661
EcoT22I ATGCAT 3 cut(s) 128, 177, 631
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 661
FaeI CATG 2 cut(s) 130, 319
FatI CATG 2 cut(s) 126, 315
FauI CCCGC 2 cut(s) 689, 693
FauNDI CATATG 1 cut(s) 40
FblI GTMKAC 1 cut(s) 975
Fnu4HI GCNGC 2 cut(s) 429, 849
FokI GGATG 2 cut(s) 638, 995
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 429, 849
FspBI CTAG 4 cut(s) 6, 33, 113, 359
GlaI GCGC 1 cut(s) 379
GluI GCNGC 2 cut(s) 429, 849
HaeIII GGCC 1 cut(s) 131
HapII CCGG 2 cut(s) 249, 979
HhaI GCGC 1 cut(s) 380
Hin1II CATG 2 cut(s) 130, 319
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 2 cut(s) 805, 976
HindII GTYRAC 2 cut(s) 805, 976
HinfI GANTC 3 cut(s) 140, 811, 1019
HpaI GTTAAC 1 cut(s) 805
HpaII CCGG 2 cut(s) 249, 979
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 3 cut(s) 56, 805, 976
Hpy188I TCNGA 5 cut(s) 139, 329, 886, 941, 1003
Hpy8I GTNNAC 3 cut(s) 56, 805, 976
Hpy99I CGWCG 2 cut(s) 78, 410
HpyAV CCTTC 2 cut(s) 686, 946
HpyCH4III ACNGT 4 cut(s) 60, 550, 604, 726
HpyCH4IV ACGT 2 cut(s) 157, 762
HpyCH4V TGCA 8 cut(s) 44, 126, 175, 431, 478, 629, 648, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 407
HpyF3I CTNAG 5 cut(s) 217, 522, 747, 768, 885
HpySE526I ACGT 2 cut(s) 157, 762
Hsp92II CATG 2 cut(s) 130, 319
HspAI GCGC 1 cut(s) 378
KspAI GTTAAC 1 cut(s) 805
Kzo9I GATC 4 cut(s) 414, 588, 853, 986
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 8 cut(s) 94, 262, 269, 356, 378, 703, 751, 992
Lsp1109I GCAGC 2 cut(s) 415, 860
LweI GCATC 3 cut(s) 280, 493, 616
MaeI CTAG 4 cut(s) 6, 33, 113, 359
MaeII ACGT 2 cut(s) 157, 762
MaeIII GTNAC 3 cut(s) 310, 544, 1006
MalI GATC 4 cut(s) 416, 590, 855, 988
MboI GATC 4 cut(s) 414, 588, 853, 986
MboII GAAGA 4 cut(s) 283, 379, 583, 944
MflI RGATCY 1 cut(s) 986
MhlI GDGCHC 4 cut(s) 91, 112, 255, 348
MluCI AATT 2 cut(s) 100, 611
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 8 cut(s) 102, 142, 254, 441, 493, 525, 767, 838
Mph1103I ATGCAT 3 cut(s) 128, 177, 631
MseI TTAA 4 cut(s) 189, 507, 804, 924
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 2 cut(s) 249, 979
MspR9I CCNGG 2 cut(s) 250, 980
MwoI GCNNNNNNNGC 2 cut(s) 95, 407
NciI CCSGG 2 cut(s) 250, 980
NdeI CATATG 1 cut(s) 40
NdeII GATC 4 cut(s) 414, 588, 853, 986
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 130, 319
NlaIV GGNNCC 3 cut(s) 109, 254, 988
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 3 cut(s) 128, 177, 631
PfeI GAWTC 2 cut(s) 811, 1019
PkrI GCNGC 2 cut(s) 430, 850
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp1406I AACGTT 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 109, 254, 988
PspPI GGNCC 1 cut(s) 53
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 986
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 3 cut(s) 79, 536, 733
RsaNI GTAC 3 cut(s) 78, 535, 732
RseI CAYNNNNRTG 1 cut(s) 395
SalI GTCGAC 1 cut(s) 974
SaqAI TTAA 4 cut(s) 189, 507, 804, 924
SatI GCNGC 2 cut(s) 429, 849
Sau3AI GATC 4 cut(s) 414, 588, 853, 986
Sau96I GGNCC 1 cut(s) 53
ScaI AGTACT 1 cut(s) 733
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 250, 980
SduI GDGCHC 4 cut(s) 91, 112, 255, 348
SfaNI GCATC 3 cut(s) 280, 493, 616
SfcI CTRYAG 2 cut(s) 429, 600
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 260, 418
SmoI CTYRAG 2 cut(s) 260, 418
Sse9I AATT 2 cut(s) 100, 611
SsiI CCGC 3 cut(s) 23, 696, 700
SspMI CTAG 4 cut(s) 6, 33, 113, 359
StyD4I CCNGG 2 cut(s) 248, 978
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 4 cut(s) 60, 550, 604, 726
TaiI ACGT 2 cut(s) 160, 765
TaqI TCGA 4 cut(s) 516, 686, 975, 995
TasI AATT 2 cut(s) 100, 611
TatI WGTACW 1 cut(s) 731
TfiI GAWTC 2 cut(s) 811, 1019
Tru1I TTAA 4 cut(s) 189, 507, 804, 924
Tru9I TTAA 4 cut(s) 189, 507, 804, 924
TscAI CASTG 2 cut(s) 65, 717
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 428, 848
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 525, 965
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 2 cut(s) 65, 717
VpaK11BI GGWCC 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmiI GTMKAC 1 cut(s) 975
XspI CTAG 4 cut(s) 6, 33, 113, 359
ZrmI AGTACT 1 cut(s) 733
Zsp2I ATGCAT 3 cut(s) 128, 177, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.