Rroxscaffold_1G00026780

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002844
Physical Location & Seq
Forward (+)
33728838 .. 33730684
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026780.1

Sequence Viewer

Length: 1053 bp
ATGGATAGCAATAGAATGATACCATCATCGCGTCCAGGTCTAAGAGATCCTTCAGCTCAAACAAATGCAAGGAATGGTCATGGTCCAAAGAGTAGAATGTATCGTCGTACTAGAAGTGCCCCTCTTGCTAATTACGGAACCGTAGAGGCAAAATGCGTTGCCGCAGTTCAACAACGTTCTCAATCCATTATGCACTTGAGTTTTGTTAAAGTAGCTATATTCTTGACTGTCTACTTAGGAGTGGGAACTATGTGCTTCTACTTCGTCAGGCACCAGCTCGAGGGAGACAAGACAAAAGCAGTTCTTGATGCTGTTTATTTCTGTGTTGTGACCATGACCACTCTCGGATATGGAGACCTGGTGCCCAACAGCACACTAGCGAAACTACTGGCTTGTGCTTTTGTCTTTACAGGAATGGCTCTTGTCGCATTGATCTTGAGCAAAGCAGCAGACTATTTGGTAGAGAGGCAAGAAATGTTGCTTACCAGAGCCCTGCATGGGCATCAGAAGTTTGGTCCAATTGAAGTCCATAAAGAAGTCGAGCCTAAGAGTGTGAGGTACAAATGTGTTACGGTCTTTATCCTTCTTTTGGTTCTTATGGCTTCTGGCACGATCTTCCTGGCTAAAGTTGAGAAATTCGACCTTGTGGATGCATTTTATTGCGTTTGTTGCACCATCACAAGCCTGGGGTATGGAGATAAGAGCTTCTCAACTGAAGCCGGGCGTGTTTTTGCAGTGTTCTGGATATTGGCAAGTACCACCTGTTTGGCTCAGTTTTTCCTCTACATTGCTGAGCTAAACACCCAGCATAGACAAAAGGCATTGATTAACTTGGTTCTTACTCGTCAAGTTACCAAAGTTGATTTGGAGGCAGCTGATCTTGATGATGATGGGGTTGTTGGGGCTGCTGAGTTTGTCATATATAAACTCAAAGAGATGGGAAAGATTAACCAAGAAGATGTCAGACTTGTAATGAAGGAGTTTGAAGCTCTTGATGTCGACCAGTCTGGAACCTTGTCGATTAAAGATGTAACGCTTGCTCAATCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

350

Amino Acids

38.78

Weight (kDa)

8.48

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 74 - 154 1.8e-16 Ion channel
Ion_trans_2 PF07885 195 - 267 2.4e-14 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 270, 361
AccI GTMKAC 2 cut(s) 231, 999
AccII CGCG 1 cut(s) 31
AciI CCGC 1 cut(s) 162
AclI AACGTT 1 cut(s) 175
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 2 cut(s) 36, 735
AfaI GTAC 3 cut(s) 109, 560, 757
AfiI CCNNNNNNNGG 3 cut(s) 280, 498, 589
AgsI TTSAA 3 cut(s) 170, 524, 986
AjnI CCWGG 4 cut(s) 34, 357, 618, 684
AluBI AGCT 7 cut(s) 56, 215, 277, 705, 796, 875, 989
AluI AGCT 7 cut(s) 56, 215, 277, 705, 796, 875, 989
Alw26I GTCTC 2 cut(s) 279, 348
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 278
ApeKI GCWGC 3 cut(s) 446, 872, 905
ApoI RAATTY 1 cut(s) 635
AspS9I GGNCC 2 cut(s) 83, 515
AsuC2I CCSGG 1 cut(s) 721
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 2 cut(s) 83, 515
BaeGI GKGCMC 2 cut(s) 121, 366
BaeI ACNNNNGTAYC 2 cut(s) 550, 583
BanI GGYRCC 2 cut(s) 270, 361
BanII GRGCYC 1 cut(s) 493
BbvI GCAGC 3 cut(s) 458, 884, 892
BccI CCATC 4 cut(s) 31, 683, 884, 931
BciT130I CCWGG 4 cut(s) 36, 359, 620, 686
BcnI CCSGG 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 279, 348
BfaI CTAG 2 cut(s) 111, 377
BisI GCNGC 4 cut(s) 162, 447, 873, 906
BlpI GCTNAGC 1 cut(s) 792
BlsI GCNGC 4 cut(s) 163, 448, 874, 907
Bme1390I CCNGG 5 cut(s) 36, 359, 620, 686, 721
Bme18I GGWCC 2 cut(s) 83, 515
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 83, 515
BmiI GGNNCC 4 cut(s) 139, 272, 363, 1012
BmrFI CCNGG 5 cut(s) 36, 359, 620, 686, 721
BmsI GCATC 3 cut(s) 298, 511, 640
Bpu1102I GCTNAGC 1 cut(s) 792
BpuEI CTTGAG 2 cut(s) 217, 457
BpuMI CCSGG 1 cut(s) 721
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 685
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 498, 589
Bse1I ACTGG 2 cut(s) 393, 1003
Bse3DI GCAATG 1 cut(s) 786
BseBI CCWGG 4 cut(s) 36, 359, 620, 686
BseDI CCNNGG 1 cut(s) 685
BseGI GGATG 1 cut(s) 655
BseLI CCNNNNNNNGG 3 cut(s) 280, 498, 589
BseMI GCAATG 1 cut(s) 786
BseMII CTCAG 3 cut(s) 783, 785, 900
BseNI ACTGG 2 cut(s) 393, 1003
BseSI GKGCMC 2 cut(s) 121, 366
BseXI GCAGC 3 cut(s) 458, 884, 892
BseYI CCCAGC 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 31
BshNI GGYRCC 2 cut(s) 270, 361
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 720
BslI CCNNNNNNNGG 3 cut(s) 280, 498, 589
BsmAI GTCTC 2 cut(s) 279, 348
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 3 cut(s) 121, 366, 493
Bsp143I GATC 4 cut(s) 46, 432, 612, 877
Bsp1720I GCTNAGC 1 cut(s) 792
BspACI CCGC 1 cut(s) 162
BspCNI CTCAG 3 cut(s) 784, 784, 901
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 4 cut(s) 139, 272, 363, 1012
BspPI GGATC 1 cut(s) 41
BspT107I GGYRCC 2 cut(s) 270, 361
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 786
BsrI ACTGG 2 cut(s) 393, 1003
BssECI CCNNGG 1 cut(s) 685
BssMI GATC 4 cut(s) 46, 432, 612, 877
Bst2UI CCWGG 4 cut(s) 36, 359, 620, 686
Bst4CI ACNGT 3 cut(s) 142, 229, 574
BstC8I GCNNGC 1 cut(s) 1038
BstDEI CTNAG 6 cut(s) 41, 235, 546, 771, 792, 909
BstF5I GGATG 1 cut(s) 655
BstFNI CGCG 1 cut(s) 31
BstKTI GATC 4 cut(s) 49, 435, 615, 880
BstMAI GTCTC 2 cut(s) 279, 348
BstMBI GATC 4 cut(s) 46, 432, 612, 877
BstMWI GCNNNNNNNGC 3 cut(s) 125, 425, 669
BstNI CCWGG 4 cut(s) 36, 359, 620, 686
BstSCI CCNGG 5 cut(s) 34, 357, 618, 684, 719
BstSLI GKGCMC 2 cut(s) 121, 366
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 458, 884, 892
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 766
BstYI RGATCY 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 655
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 1 cut(s) 1038
Cfr13I GGNCC 2 cut(s) 83, 515
CseI GACGC 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 357
Csp6I GTAC 3 cut(s) 108, 559, 756
CviAII CATG 3 cut(s) 80, 334, 497
CviQI GTAC 3 cut(s) 108, 559, 756
DdeI CTNAG 6 cut(s) 41, 235, 546, 771, 792, 909
DpnI GATC 4 cut(s) 48, 434, 614, 879
DpnII GATC 4 cut(s) 46, 432, 612, 877
Eco24I GRGCYC 1 cut(s) 493
Eco31I GGTCTC 1 cut(s) 348
Eco47I GGWCC 2 cut(s) 83, 515
Eco57I CTGAAG 2 cut(s) 36, 735
Eco88I CYCGRG 1 cut(s) 278
EcoRII CCWGG 4 cut(s) 34, 357, 618, 684
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 3 cut(s) 83, 337, 500
FalI AAGNNNNNCTT 4 cut(s) 34, 66, 288, 320
FatI CATG 3 cut(s) 79, 333, 496
FblI GTMKAC 2 cut(s) 231, 999
Fnu4HI GCNGC 4 cut(s) 162, 447, 873, 906
FokI GGATG 1 cut(s) 662
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 4 cut(s) 162, 447, 873, 906
FspBI CTAG 2 cut(s) 111, 377
GluI GCNGC 4 cut(s) 162, 447, 873, 906
GsaI CCCAGC 1 cut(s) 808
HapII CCGG 1 cut(s) 720
HgaI GACGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 83, 337, 500
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HpaII CCGG 1 cut(s) 720
Hpy166II GTNNAC 2 cut(s) 232, 1000
Hpy188I TCNGA 3 cut(s) 347, 507, 965
Hpy188III TCNNGA 7 cut(s) 223, 305, 436, 742, 881, 992, 1008
Hpy8I GTNNAC 2 cut(s) 232, 1000
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 3 cut(s) 60, 593, 970
HpyCH4III ACNGT 3 cut(s) 142, 229, 574
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 6 cut(s) 68, 193, 496, 653, 672, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 425, 669
HpyF3I CTNAG 6 cut(s) 41, 235, 546, 771, 792, 909
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 3 cut(s) 83, 337, 500
Kzo9I GATC 4 cut(s) 46, 432, 612, 877
Lsp1109I GCAGC 3 cut(s) 458, 884, 892
LweI GCATC 3 cut(s) 298, 511, 640
MabI ACCWGGT 1 cut(s) 357
MaeI CTAG 2 cut(s) 111, 377
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 4 cut(s) 328, 568, 850, 1030
MalI GATC 4 cut(s) 48, 434, 614, 879
MboI GATC 4 cut(s) 46, 432, 612, 877
MboII GAAGA 2 cut(s) 607, 968
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 3 cut(s) 121, 366, 493
MluCI AATT 3 cut(s) 130, 519, 635
MnlI CCTC 7 cut(s) 132, 139, 274, 459, 549, 791, 862
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 5 cut(s) 207, 828, 948, 1023, 1051
MspA1I CMGCKG 1 cut(s) 875
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 5 cut(s) 36, 359, 620, 686, 721
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 4 cut(s) 36, 359, 620, 686
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 125, 425, 669
NciI CCSGG 1 cut(s) 721
NdeII GATC 4 cut(s) 46, 432, 612, 877
NlaIII CATG 3 cut(s) 83, 337, 500
NlaIV GGNNCC 4 cut(s) 139, 272, 363, 1012
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 655
PaeR7I CTCGAG 1 cut(s) 278
PkrI GCNGC 4 cut(s) 163, 448, 874, 907
Psp1406I AACGTT 1 cut(s) 175
Psp6I CCWGG 4 cut(s) 34, 357, 618, 684
PspFI CCCAGC 1 cut(s) 804
PspGI CCWGG 4 cut(s) 34, 357, 618, 684
PspN4I GGNNCC 4 cut(s) 139, 272, 363, 1012
PspPI GGNCC 2 cut(s) 83, 515
PspXI VCTCGAGB 1 cut(s) 278
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 3 cut(s) 109, 560, 757
RsaNI GTAC 3 cut(s) 108, 559, 756
SalI GTCGAC 1 cut(s) 998
SaqAI TTAA 5 cut(s) 207, 828, 948, 1023, 1051
SatI GCNGC 4 cut(s) 162, 447, 873, 906
Sau3AI GATC 4 cut(s) 46, 432, 612, 877
Sau96I GGNCC 2 cut(s) 83, 515
ScrFI CCNGG 5 cut(s) 36, 359, 620, 686, 721
SduI GDGCHC 3 cut(s) 121, 366, 493
SexAI ACCWGGT 1 cut(s) 357
SfaNI GCATC 3 cut(s) 298, 511, 640
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 2 cut(s) 83, 515
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 3 cut(s) 196, 278, 436
SmoI CTYRAG 3 cut(s) 196, 278, 436
Sse9I AATT 3 cut(s) 130, 519, 635
SsiI CCGC 1 cut(s) 162
SspMI CTAG 2 cut(s) 111, 377
StyD4I CCNGG 5 cut(s) 34, 357, 618, 684, 719
TaaI ACNGT 3 cut(s) 142, 229, 574
TaiI ACGT 1 cut(s) 178
TaqI TCGA 5 cut(s) 279, 540, 639, 999, 1019
TasI AATT 3 cut(s) 130, 519, 635
TauI GCSGC 1 cut(s) 164
Tru1I TTAA 5 cut(s) 207, 828, 948, 1023, 1051
Tru9I TTAA 5 cut(s) 207, 828, 948, 1023, 1051
TscAI CASTG 1 cut(s) 741
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 3 cut(s) 446, 872, 905
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 989
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 741
VpaK11BI GGWCC 2 cut(s) 83, 515
XapI RAATTY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 2 cut(s) 682, 862
XhoI CTCGAG 1 cut(s) 278
XmiI GTMKAC 2 cut(s) 231, 999
XspI CTAG 2 cut(s) 111, 377
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.