Rh5DG379800

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002844
Physical Location & Seq
Reverse (-)
57790211 .. 57791366
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG379800.1

Sequence Viewer

Length: 1038 bp
ATGAGACCATCATTGCGTCCAGGTCTAAGAGATCCTTCAGCTCAAACAAATGCAAGGAATGACCATGGTCCAAAGAGTAGAATATATCGTCGTACTAGAAGTGCCCCTCTTGCTAATTACGGAGCCGAAGAGGCAAAATGCGTTGCCGCAGTTCAACAACGTTCTCAATCCATTATGCACTTGAGTTTTGTTAAAGTAGCTATATTCTTGGCTGTCTACTTAGGAGTGGGAACTATGTGCTTCTACTTCGTCAGGCACCAGCTCGAGGGAGACAAGACAAAACCAGTTCTTGATGCTGTTTATTTCTGTGTTGTGACCATGACCACTCTCGGATATGGAGACCTAGTACCCAACAGCACACTAGCGAAACTACTGGCTTGTGCTTTTGTCTTTACAGGAATGGCTCTTGTCGCATTGATCTTGAGCAAAGCAGCAGACTATTTGGTAGAGAGGCAAGAAATGTTTCTTGCCAAAGCCCTGCATGGGCATCAGAAGTTTGGTCCAATTGAAGTTCATAAAGAAGTCGAGCCTAAGAGTGTGAGGTACAAATGTGTTACGGTCTTTATCCTTCTTTTGGTTCTTATGGCTTCTGGCACGATCTTCCTAGCTACAGTTGAGAAATTCGACTTTGTGGATGCATTTTATTGCGTTTGTTGCACCATCACAAGCCTGGGGTATGGAGATAAGAGCTTCTCAACTGAAGCCGGGCGTGTTTTTGCAGTGTTCTGGATATTGGCAAGTACCACCTGTTTGGCTCAGTTTTTCCTCTACATAGCTGAGCTAAACACCCAGCATAGACAAAAGGCATTGGTTAACTTGGTTCTTACTCGTGAAGTTACCAAAGTTGATTTGGAGGCAGCTGATCTTGATGATGATGGGGTTGTTGGGTCTGCTGAGTTTGTCATATATAAACTCAAAGAGATGGGAAAGATTAACCAAGAAGATGTCAGACTTGTAATGAAGGAGTTTGAAGCTCTTGATGTCGACCAGTCTGGAACCTTGTCGATTAAAGATGTAACGCTTGCTCAATCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

345

Amino Acids

38.27

Weight (kDa)

7.55

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 70 - 149 1.5e-16 Ion channel
Ion_trans_2 PF07885 189 - 262 5.4e-15 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AccI GTMKAC 2 cut(s) 216, 984
AciI CCGC 1 cut(s) 147
AclI AACGTT 1 cut(s) 160
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 2 cut(s) 21, 720
AfaI GTAC 4 cut(s) 94, 348, 545, 742
AfiI CCNNNNNNNGG 3 cut(s) 265, 483, 574
AgsI TTSAA 3 cut(s) 155, 509, 971
AjnI CCWGG 2 cut(s) 19, 669
AluBI AGCT 9 cut(s) 41, 200, 262, 608, 690, 776, 781, 860, 974
AluI AGCT 9 cut(s) 41, 200, 262, 608, 690, 776, 781, 860, 974
Alw26I GTCTC 2 cut(s) 264, 333
AlwI GGATC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 431, 857
ApoI RAATTY 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 462
AspS9I GGNCC 2 cut(s) 68, 500
AsuC2I CCSGG 1 cut(s) 706
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 2 cut(s) 68, 500
BaeGI GKGCMC 1 cut(s) 106
BaeI ACNNNNGTAYC 2 cut(s) 535, 568
BanI GGYRCC 1 cut(s) 255
BauI CACGAG 1 cut(s) 828
BbvI GCAGC 2 cut(s) 443, 869
BccI CCATC 4 cut(s) 16, 668, 869, 916
BciT130I CCWGG 2 cut(s) 21, 671
BcnI CCSGG 1 cut(s) 706
BcoDI GTCTC 2 cut(s) 264, 333
BfaI CTAG 4 cut(s) 96, 344, 362, 605
BfmI CTRYAG 1 cut(s) 609
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 3 cut(s) 147, 432, 858
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 3 cut(s) 148, 433, 859
Bme1390I CCNGG 3 cut(s) 21, 671, 706
Bme18I GGWCC 2 cut(s) 68, 500
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 68, 500
BmiI GGNNCC 3 cut(s) 124, 257, 997
BmrFI CCNGG 3 cut(s) 21, 671, 706
BmsI GCATC 3 cut(s) 283, 496, 625
BoxI GACNNNNGTC 1 cut(s) 66
Bpu1102I GCTNAGC 1 cut(s) 777
BpuEI CTTGAG 2 cut(s) 202, 442
BpuMI CCSGG 1 cut(s) 706
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 64, 670
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 483, 574
Bse1I ACTGG 3 cut(s) 284, 378, 988
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 2 cut(s) 21, 671
BseDI CCNNGG 2 cut(s) 64, 670
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 3 cut(s) 265, 483, 574
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 3 cut(s) 768, 770, 885
BseNI ACTGG 3 cut(s) 284, 378, 988
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 2 cut(s) 443, 869
BseYI CCCAGC 1 cut(s) 789
BshNI GGYRCC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 705
BslI CCNNNNNNNGG 3 cut(s) 265, 483, 574
BsmAI GTCTC 2 cut(s) 264, 333
Bso31I GGTCTC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 4 cut(s) 31, 417, 597, 862
Bsp1720I GCTNAGC 1 cut(s) 777
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 1 cut(s) 147
BspCNI CTCAG 3 cut(s) 769, 769, 886
BspLI GGNNCC 3 cut(s) 124, 257, 997
BspPI GGATC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 3 cut(s) 284, 378, 988
BssECI CCNNGG 2 cut(s) 64, 670
BssMI GATC 4 cut(s) 31, 417, 597, 862
BssSI CACGAG 1 cut(s) 828
BssT1I CCWWGG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 828
Bst2UI CCWGG 2 cut(s) 21, 671
Bst4CI ACNGT 2 cut(s) 559, 613
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 1023
BstDEI CTNAG 6 cut(s) 26, 220, 531, 756, 777, 894
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 4 cut(s) 34, 420, 600, 865
BstMAI GTCTC 2 cut(s) 264, 333
BstMBI GATC 4 cut(s) 31, 417, 597, 862
BstMWI GCNNNNNNNGC 4 cut(s) 110, 131, 410, 654
BstNI CCWGG 2 cut(s) 21, 671
BstPAI GACNNNNGTC 1 cut(s) 66
BstSCI CCNGG 3 cut(s) 19, 669, 704
BstSFI CTRYAG 1 cut(s) 609
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 443, 869
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 751
BstYI RGATCY 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 640
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 1 cut(s) 1023
Cfr13I GGNCC 2 cut(s) 68, 500
CseI GACGC 1 cut(s) 5
Csp6I GTAC 4 cut(s) 93, 347, 544, 741
CviAII CATG 3 cut(s) 65, 319, 482
CviQI GTAC 4 cut(s) 93, 347, 544, 741
DdeI CTNAG 6 cut(s) 26, 220, 531, 756, 777, 894
DpnI GATC 4 cut(s) 33, 419, 599, 864
DpnII GATC 4 cut(s) 31, 417, 597, 862
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 333
Eco47I GGWCC 2 cut(s) 68, 500
Eco57I CTGAAG 2 cut(s) 21, 720
Eco88I CYCGRG 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 19, 669
EcoT14I CCWWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 3 cut(s) 68, 322, 485
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FatI CATG 3 cut(s) 64, 318, 481
FblI GTMKAC 2 cut(s) 216, 984
Fnu4HI GCNGC 3 cut(s) 147, 432, 858
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 3 cut(s) 147, 432, 858
FspBI CTAG 4 cut(s) 96, 344, 362, 605
GluI GCNGC 3 cut(s) 147, 432, 858
GsaI CCCAGC 1 cut(s) 793
HapII CCGG 1 cut(s) 705
HgaI GACGC 1 cut(s) 5
Hin1II CATG 3 cut(s) 68, 322, 485
HincII GTYRAC 2 cut(s) 814, 985
HindII GTYRAC 2 cut(s) 814, 985
HpaI GTTAAC 1 cut(s) 814
HpaII CCGG 1 cut(s) 705
Hpy166II GTNNAC 3 cut(s) 217, 814, 985
Hpy188I TCNGA 3 cut(s) 332, 492, 950
Hpy188III TCNNGA 7 cut(s) 290, 421, 727, 830, 866, 977, 993
Hpy8I GTNNAC 3 cut(s) 217, 814, 985
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 3 cut(s) 45, 578, 955
HpyCH4III ACNGT 2 cut(s) 559, 613
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 6 cut(s) 53, 178, 481, 638, 657, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 131, 410, 654
HpyF3I CTNAG 6 cut(s) 26, 220, 531, 756, 777, 894
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 3 cut(s) 68, 322, 485
KspAI GTTAAC 1 cut(s) 814
Kzo9I GATC 4 cut(s) 31, 417, 597, 862
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 2 cut(s) 443, 869
LweI GCATC 3 cut(s) 283, 496, 625
MaeI CTAG 4 cut(s) 96, 344, 362, 605
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 4 cut(s) 313, 553, 835, 1015
MalI GATC 4 cut(s) 33, 419, 599, 864
MboI GATC 4 cut(s) 31, 417, 597, 862
MboII GAAGA 3 cut(s) 140, 592, 953
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 3 cut(s) 115, 504, 620
MnlI CCTC 7 cut(s) 117, 124, 259, 444, 534, 776, 847
Mph1103I ATGCAT 1 cut(s) 640
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 5 cut(s) 192, 813, 933, 1008, 1036
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 1 cut(s) 705
MspR9I CCNGG 3 cut(s) 21, 671, 706
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 2 cut(s) 21, 671
MwoI GCNNNNNNNGC 4 cut(s) 110, 131, 410, 654
NciI CCSGG 1 cut(s) 706
NcoI CCATGG 1 cut(s) 64
NdeII GATC 4 cut(s) 31, 417, 597, 862
NlaIII CATG 3 cut(s) 68, 322, 485
NlaIV GGNNCC 3 cut(s) 124, 257, 997
NmuCI GTSAC 1 cut(s) 313
NsiI ATGCAT 1 cut(s) 640
PaeR7I CTCGAG 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 462
PkrI GCNGC 3 cut(s) 148, 433, 859
PshAI GACNNNNGTC 1 cut(s) 66
Psp1406I AACGTT 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 19, 669
PspFI CCCAGC 1 cut(s) 789
PspGI CCWGG 2 cut(s) 19, 669
PspN4I GGNNCC 3 cut(s) 124, 257, 997
PspPI GGNCC 2 cut(s) 68, 500
PspXI VCTCGAGB 1 cut(s) 263
PsuI RGATCY 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 860
RsaI GTAC 4 cut(s) 94, 348, 545, 742
RsaNI GTAC 4 cut(s) 93, 347, 544, 741
SalI GTCGAC 1 cut(s) 983
SaqAI TTAA 5 cut(s) 192, 813, 933, 1008, 1036
SatI GCNGC 3 cut(s) 147, 432, 858
Sau3AI GATC 4 cut(s) 31, 417, 597, 862
Sau96I GGNCC 2 cut(s) 68, 500
ScrFI CCNGG 3 cut(s) 21, 671, 706
SduI GDGCHC 1 cut(s) 106
SfaNI GCATC 3 cut(s) 283, 496, 625
SfcI CTRYAG 1 cut(s) 609
Sfr274I CTCGAG 1 cut(s) 263
SinI GGWCC 2 cut(s) 68, 500
SlaI CTCGAG 1 cut(s) 263
SmlI CTYRAG 3 cut(s) 181, 263, 421
SmoI CTYRAG 3 cut(s) 181, 263, 421
Sse9I AATT 3 cut(s) 115, 504, 620
SsiI CCGC 1 cut(s) 147
SspMI CTAG 4 cut(s) 96, 344, 362, 605
StyD4I CCNGG 3 cut(s) 19, 669, 704
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 559, 613
TaiI ACGT 1 cut(s) 163
TaqI TCGA 5 cut(s) 264, 525, 624, 984, 1004
TasI AATT 3 cut(s) 115, 504, 620
TauI GCSGC 1 cut(s) 149
Tru1I TTAA 5 cut(s) 192, 813, 933, 1008, 1036
Tru9I TTAA 5 cut(s) 192, 813, 933, 1008, 1036
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 2 cut(s) 431, 857
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 503, 974
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 726
VpaK11BI GGWCC 2 cut(s) 68, 500
XapI RAATTY 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 2 cut(s) 667, 847
XhoI CTCGAG 1 cut(s) 263
XmiI GTMKAC 2 cut(s) 216, 984
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 4 cut(s) 96, 344, 362, 605
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.