FvH4_3g29410

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002844
Physical Location & Seq
Reverse (-)
22491258 .. 22494853
3596 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29410.t1

Sequence Viewer

Length: 1041 bp
ATGGATAGGAATGGGATGCGAGAACCCTTGCTTCCAGGGGTCATAGATCCTTCACCTCGAGCAAAGACAAAGAATGGTCCAAAGAGTAGACGATTTCGTCGTACTAGAAGTGCTCCTCTTGCTGAGTATGCACCCCTAGAGGCATACGGCATTGACTCAGTTCAACGTCCTGAATCTGTTATTCACCCTAGTTTTGTTAAAGTAGCTATTTTCTTGACTGTCTACTTAGGATTGGGAACTATATGTTTCTACCTCGTCAGGAACCAGATCGAGGGCGAGAAGACGAATGCAATTCTTGATGCTGTTTATTTCTGTATTGTGACAATGACTACTCTTGGATATGGAGATTTAGTGCCCGACAGTATCCCAGCGAAACTACTGGCCTGTGCTTTTGTCTTTACTGGGATGGCTCTTGTCGGTTTGATCTTGAGCCAAGCAGCAGACTATTTAGTAGAGAAGCAAGAAAGATTGCTTATCAAAGGTTTCCATGTGCATCAGCAATTTGGTGAAACTGATGTCCTTAAAGAAGTTGAGACTAACAGTTTGAGGTACAAATGCATTACAGTCTTTATCCTTCTTTTGGTACTTATGACTTCCGGCACGATCTTCCTAGCTACAGTTGAGAAATTGGACCTAGTGGATGCATTTTACTGTGTTTGTTCCACCATCACTACCCTGGGATATGGAGATAAGAGCTTCTCAACTGAACCCGGGCGTGTTTTTGCAGTTTTCTGGATATTGACAAGTACTATCTGTTTAGCTCAGTTTTTCCTCTACATTGCCGAGCTATACACCCAGCATAGACAAAGGGCACTGGTTGACTTTGTTCTTACCCGTAGAATGACTAACGTAGATTTGGAGGCAGCTGATCTTGATGATGATGGGGTTGTTGGGGCTGCTGAGTTTGTCATATATAAACTCAAAGAGATGGGGAAGATTAATCAAGAAGATATTAGACTTGTAATGGAGGAGTTTGAGGCTCTTGATGTTGATCAGTCTGGATCCTTGTCAGTTTCAGATCTAACACTTGCTCAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

347

Amino Acids

38.6

Weight (kDa)

5.11

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 71 - 151 1.4e-16 Ion channel
Ion_trans PF00520 72 - 155 3.2e-06 Ion transport protein
Ion_trans_2 PF07885 191 - 265 1.2e-14 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 96
AccI GTMKAC 2 cut(s) 88, 222
AclWI GGATC 3 cut(s) 41, 996, 1009
AfaI GTAC 4 cut(s) 103, 551, 585, 748
AfiI CCNNNNNNNGG 2 cut(s) 271, 580
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 2 cut(s) 34, 675
AluBI AGCT 6 cut(s) 206, 614, 696, 761, 787, 866
AluI AGCT 6 cut(s) 206, 614, 696, 761, 787, 866
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 3 cut(s) 41, 996, 1009
Ama87I CYCGRG 2 cut(s) 57, 710
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 437, 863, 896
ArsI GACNNNNNNTTYG 2 cut(s) 526, 558
AseI ATTAAT 1 cut(s) 939
AspS9I GGNCC 2 cut(s) 77, 631
AsuC2I CCSGG 2 cut(s) 711, 712
AsuHPI GGTGA 3 cut(s) 45, 176, 518
AvaI CYCGRG 2 cut(s) 57, 710
AvaII GGWCC 2 cut(s) 77, 631
BaeGI GKGCMC 2 cut(s) 357, 814
BamHI GGATCC 1 cut(s) 1001
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 449, 875, 883
BccI CCATC 4 cut(s) 400, 674, 875, 922
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 2 cut(s) 36, 677
BciVI GTATCC 1 cut(s) 374
BclI TGATCA 1 cut(s) 991
BcnI CCSGG 2 cut(s) 711, 712
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 5 cut(s) 105, 137, 189, 611, 635
BfmI CTRYAG 1 cut(s) 615
BfuI GTATCC 1 cut(s) 374
BglII AGATCT 1 cut(s) 1018
BisI GCNGC 3 cut(s) 438, 864, 897
BlsI GCNGC 3 cut(s) 439, 865, 898
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 4 cut(s) 36, 677, 711, 712
Bme18I GGWCC 2 cut(s) 77, 631
BmeT110I CYCGRG 2 cut(s) 57, 710
BmgT120I GGNCC 2 cut(s) 77, 631
BmiI GGNNCC 2 cut(s) 263, 1003
BmrFI CCNGG 4 cut(s) 36, 677, 711, 712
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 4 cut(s) 6, 289, 502, 631
BmuI ACTGGG 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 448
BpuMI CCSGG 2 cut(s) 711, 712
BsaBI GATNNNNATC 1 cut(s) 990
BsaJI CCNNGG 4 cut(s) 35, 675, 676, 710
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 580
Bse1I ACTGG 3 cut(s) 384, 406, 819
Bse3DI GCAATG 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 2 cut(s) 36, 677
BseDI CCNNGG 4 cut(s) 35, 675, 676, 710
BseGI GGATG 3 cut(s) 21, 411, 646
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 2 cut(s) 271, 580
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 4 cut(s) 114, 171, 776, 891
BseNI ACTGG 3 cut(s) 384, 406, 819
BseRI GAGGAG 2 cut(s) 105, 983
BseSI GKGCMC 2 cut(s) 357, 814
BseXI GCAGC 3 cut(s) 449, 875, 883
BseYI CCCAGC 2 cut(s) 367, 795
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 2 cut(s) 57, 710
BsiSI CCGG 2 cut(s) 597, 711
BslI CCNNNNNNNGG 2 cut(s) 271, 580
BsmAI GTCTC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 383
BsoBI CYCGRG 2 cut(s) 57, 710
Bsp1286I GDGCHC 3 cut(s) 115, 357, 814
Bsp143I GATC 8 cut(s) 46, 267, 423, 603, 868, 991, 1001, 1018
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 4 cut(s) 115, 170, 775, 892
BspLI GGNNCC 2 cut(s) 263, 1003
BspPI GGATC 3 cut(s) 41, 996, 1009
BsrDI GCAATG 1 cut(s) 777
BsrI ACTGG 3 cut(s) 384, 406, 819
BssECI CCNNGG 4 cut(s) 35, 675, 676, 710
BssMI GATC 8 cut(s) 46, 267, 423, 603, 868, 991, 1001, 1018
Bst2UI CCWGG 2 cut(s) 36, 677
Bst4CI ACNGT 6 cut(s) 220, 362, 542, 565, 619, 653
BstDEI CTNAG 5 cut(s) 123, 157, 226, 762, 900
BstF5I GGATG 3 cut(s) 21, 411, 646
BstKTI GATC 8 cut(s) 49, 270, 426, 606, 871, 994, 1004, 1021
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 8 cut(s) 46, 267, 423, 603, 868, 991, 1001, 1018
BstMWI GCNNNNNNNGC 2 cut(s) 119, 128
BstNI CCWGG 2 cut(s) 36, 677
BstSCI CCNGG 4 cut(s) 34, 675, 709, 710
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 2 cut(s) 357, 814
BstV1I GCAGC 3 cut(s) 449, 875, 883
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 3 cut(s) 46, 1001, 1018
BstYI RGATCY 3 cut(s) 46, 1001, 1018
BsuI GTATCC 1 cut(s) 374
BsuRI GGCC 1 cut(s) 383
BtsCI GGATG 3 cut(s) 21, 411, 646
BtsIMutI CAGTG 1 cut(s) 812
Cfr13I GGNCC 2 cut(s) 77, 631
Cfr9I CCCGGG 1 cut(s) 710
Csp6I GTAC 4 cut(s) 102, 550, 584, 747
CviAII CATG 1 cut(s) 488
CviQI GTAC 4 cut(s) 102, 550, 584, 747
DdeI CTNAG 5 cut(s) 123, 157, 226, 762, 900
DpnI GATC 8 cut(s) 48, 269, 425, 605, 870, 993, 1003, 1020
DpnII GATC 8 cut(s) 46, 267, 423, 603, 868, 991, 1001, 1018
DrdI GACNNNNNNGTC 1 cut(s) 96
DseDI GACNNNNNNGTC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 77, 631
Eco88I CYCGRG 2 cut(s) 57, 710
EcoRII CCWGG 2 cut(s) 34, 675
EcoT22I ATGCAT 2 cut(s) 560, 646
FaeI CATG 1 cut(s) 491
FatI CATG 1 cut(s) 487
FbaI TGATCA 1 cut(s) 991
FblI GTMKAC 2 cut(s) 88, 222
Fnu4HI GCNGC 3 cut(s) 438, 864, 897
FokI GGATG 3 cut(s) 28, 418, 653
Fsp4HI GCNGC 3 cut(s) 438, 864, 897
FspBI CTAG 5 cut(s) 105, 137, 189, 611, 635
GluI GCNGC 3 cut(s) 438, 864, 897
GsaI CCCAGC 2 cut(s) 371, 799
HaeIII GGCC 1 cut(s) 383
HapII CCGG 2 cut(s) 597, 711
Hin1II CATG 1 cut(s) 491
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HinfI GANTC 2 cut(s) 155, 173
HpaII CCGG 2 cut(s) 597, 711
HphI GGTGA 3 cut(s) 45, 176, 518
Hpy166II GTNNAC 3 cut(s) 89, 223, 820
Hpy188I TCNGA 1 cut(s) 1018
Hpy8I GTNNAC 3 cut(s) 89, 223, 820
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 60, 584
HpyCH4III ACNGT 6 cut(s) 220, 362, 542, 565, 619, 653
HpyCH4IV ACGT 2 cut(s) 166, 849
HpyCH4V TGCA 6 cut(s) 131, 290, 493, 558, 644, 725
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 128
HpyF3I CTNAG 5 cut(s) 123, 157, 226, 762, 900
HpySE526I ACGT 2 cut(s) 166, 849
Hsp92II CATG 1 cut(s) 491
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 8 cut(s) 46, 267, 423, 603, 868, 991, 1001, 1018
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 3 cut(s) 449, 875, 883
LweI GCATC 4 cut(s) 6, 289, 502, 631
MaeI CTAG 5 cut(s) 105, 137, 189, 611, 635
MaeII ACGT 2 cut(s) 166, 849
MaeIII GTNAC 1 cut(s) 319
MalI GATC 8 cut(s) 48, 269, 425, 605, 870, 993, 1003, 1020
MboI GATC 8 cut(s) 46, 267, 423, 603, 868, 991, 1001, 1018
MboII GAAGA 4 cut(s) 292, 598, 946, 959
MflI RGATCY 3 cut(s) 46, 1001, 1018
MhlI GDGCHC 3 cut(s) 115, 357, 814
MluCI AATT 3 cut(s) 291, 500, 626
MlyI GAGTC 1 cut(s) 149
Mph1103I ATGCAT 2 cut(s) 560, 646
MseI TTAA 3 cut(s) 198, 522, 939
MspA1I CMGCKG 1 cut(s) 866
MspI CCGG 2 cut(s) 597, 711
MspR9I CCNGG 4 cut(s) 36, 677, 711, 712
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 36, 677
MwoI GCNNNNNNNGC 2 cut(s) 119, 128
NciI CCSGG 2 cut(s) 711, 712
NdeII GATC 8 cut(s) 46, 267, 423, 603, 868, 991, 1001, 1018
NlaIII CATG 1 cut(s) 491
NlaIV GGNNCC 2 cut(s) 263, 1003
NmeAIII GCCGAG 1 cut(s) 808
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 2 cut(s) 560, 646
PaeR7I CTCGAG 1 cut(s) 57
PasI CCCWGGG 1 cut(s) 676
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 3 cut(s) 439, 865, 898
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PshBI ATTAAT 1 cut(s) 939
Psp6I CCWGG 2 cut(s) 34, 675
PspFI CCCAGC 2 cut(s) 367, 795
PspGI CCWGG 2 cut(s) 34, 675
PspN4I GGNNCC 2 cut(s) 263, 1003
PspPI GGNCC 2 cut(s) 77, 631
PspXI VCTCGAGB 1 cut(s) 57
PsuI RGATCY 3 cut(s) 46, 1001, 1018
PvuII CAGCTG 1 cut(s) 866
RsaI GTAC 4 cut(s) 103, 551, 585, 748
RsaNI GTAC 4 cut(s) 102, 550, 584, 747
SaqAI TTAA 3 cut(s) 198, 522, 939
SatI GCNGC 3 cut(s) 438, 864, 897
Sau3AI GATC 8 cut(s) 46, 267, 423, 603, 868, 991, 1001, 1018
Sau96I GGNCC 2 cut(s) 77, 631
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 4 cut(s) 36, 677, 711, 712
SduI GDGCHC 3 cut(s) 115, 357, 814
SfaNI GCATC 4 cut(s) 6, 289, 502, 631
SfcI CTRYAG 1 cut(s) 615
Sfr274I CTCGAG 1 cut(s) 57
SinI GGWCC 2 cut(s) 77, 631
SlaI CTCGAG 1 cut(s) 57
SmaI CCCGGG 1 cut(s) 712
SmlI CTYRAG 2 cut(s) 57, 427
SmoI CTYRAG 2 cut(s) 57, 427
Sse9I AATT 3 cut(s) 291, 500, 626
SspMI CTAG 5 cut(s) 105, 137, 189, 611, 635
StyD4I CCNGG 4 cut(s) 34, 675, 709, 710
TaaI ACNGT 6 cut(s) 220, 362, 542, 565, 619, 653
TaiI ACGT 2 cut(s) 169, 852
TaqI TCGA 2 cut(s) 58, 270
TasI AATT 3 cut(s) 291, 500, 626
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 3 cut(s) 198, 522, 939
Tru9I TTAA 3 cut(s) 198, 522, 939
TscAI CASTG 1 cut(s) 819
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 437, 863, 896
Tsp45I GTSAC 1 cut(s) 319
TspMI CCCGGG 1 cut(s) 710
TspRI CASTG 1 cut(s) 819
VpaK11BI GGWCC 2 cut(s) 77, 631
VspI ATTAAT 1 cut(s) 939
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XhoI CTCGAG 1 cut(s) 57
XmaI CCCGGG 1 cut(s) 710
XmiI GTMKAC 2 cut(s) 88, 222
XspI CTAG 5 cut(s) 105, 137, 189, 611, 635
ZrmI AGTACT 1 cut(s) 748
Zsp2I ATGCAT 2 cut(s) 560, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.