pycom03g13720

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0002844
Physical Location & Seq
Forward (+)
14829541 .. 14830715
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g13720.2

Sequence Viewer

Length: 1059 bp
ATGGGCTCGAATGAGAGTGGATCCTTGGTTTCAGAACCAAAAGATCCTTTGTCTCAGAAAAATATAAACAATGCTCCAAAGGGTAGAAGAATTCGCCTTTGTAAAAGTGCTCCTCTTTCAGATTATGTAGGCTTCGAGACAGGCTTTGCCTCAGGTCCAAGTACCAAATCCTTTTTCAGAAATATACACCCGAGTTTTCGTATGGTAGCTGCATTCTTGACTGTCTACTTAGGCTTAGGAACTGTATGTTTCTACCTCGTTGGCCACCAGCTCAAGGGAAAGAAGATAAATGGAGTTCTTGATGCTGTTTATTTCTGTGTTGTTACAATGACCACTGTCGGATATGGAGACCTTGTGCCAAACAGTGTTAGTTCAAAACTACTGGCTTGTGCTTTCGTCTTCTCAGGAATGGCTCTCGTCGGGATGACCTTGAGCAAAGCAGCTGACTATTTGATAGAGAAGCAGGAGTTATTGCTCGTTAAAGCCTTACATATGAATCAAAAAGCTGGGCCTATTGAAATTCTTAAAGATATCGAGACTAACAATCTGAGGTACAAATGTATTGTGGTCTTTATCCTTCTTTTGCTACTCATGATTGGTGGCACAGCCTTCCTAGCCACTGTTGAGAAATTGAGCCTTGTGGATGCATTCTATTGCGTTTGTTGTACAATCACAACCCTGGGTTATGGAGATAAGAGCTTTTCGACTCAAGCAGGGCGTGTTTTTGCAGTATTCTGGATATTGACAGGTACCATTTGTTTAGCTCAGTTTTTCCTCTACGTTGCCGAGCTAAACGCCCAGAGCAGACAACGGGCGTTAGTAAAGTTGATTCTCACTCGTAGGATGACCAATGTAGATTTAGAGGCAGCTGATCTGGATGGCGATGGTGTTGTTGGGGCTGCTGAATTTGTCATATACAAGCTCAAAGAGATGGGGAAGATTAGCCAGGAAGATGTTAGACTTGTAATGGAGGAGTTTGAAGATCTTGATGTTGATCAGTCAGGAACATTGTCGACATCAGATATAATGCTTGCACAACAACCTCAAGTCGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

353

Amino Acids

38.55

Weight (kDa)

6.82

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 749
AccI GTMKAC 2 cut(s) 225, 1013
AclWI GGATC 3 cut(s) 15, 28, 38
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 3 cut(s) 90, 519, 905
AfaI GTAC 4 cut(s) 163, 554, 667, 751
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 3 cut(s) 375, 518, 980
AjnI CCWGG 2 cut(s) 678, 945
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 9 cut(s) 209, 271, 443, 506, 699, 764, 790, 869, 922
AluI AGCT 9 cut(s) 209, 271, 443, 506, 699, 764, 790, 869, 922
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 4 cut(s) 57, 131, 342, 530
AlwI GGATC 3 cut(s) 15, 28, 38
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 2 cut(s) 262, 509
ApeKI GCWGC 4 cut(s) 209, 440, 866, 899
ApoI RAATTY 3 cut(s) 90, 519, 905
Asp718I GGTACC 1 cut(s) 749
AspS9I GGNCC 2 cut(s) 155, 509
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 151
BaeI ACNNNNGTAYC 2 cut(s) 544, 577
BalI TGGCCA 1 cut(s) 264
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 749
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 4 cut(s) 196, 452, 878, 886
BccI CCATC 3 cut(s) 872, 878, 925
BciT130I CCWGG 2 cut(s) 680, 947
BclI TGATCA 1 cut(s) 994
BcoDI GTCTC 4 cut(s) 57, 131, 342, 530
BfaI CTAG 1 cut(s) 614
BglII AGATCT 1 cut(s) 982
BisI GCNGC 4 cut(s) 210, 441, 867, 900
BlsI GCNGC 4 cut(s) 211, 442, 868, 901
Bme1390I CCNGG 2 cut(s) 680, 947
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 155, 509
BmiI GGNNCC 2 cut(s) 22, 751
BmrFI CCNGG 2 cut(s) 680, 947
BmsI GCATC 2 cut(s) 292, 634
BoxI GACNNNNGTC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 235
BpuEI CTTGAG 4 cut(s) 257, 451, 693, 1029
BsaBI GATNNNNATC 1 cut(s) 993
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 24, 678, 679
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 387
Bse21I CCTNAGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 993
BseBI CCWGG 2 cut(s) 680, 947
BseDI CCNNGG 3 cut(s) 24, 678, 679
BseGI GGATG 4 cut(s) 429, 649, 849, 883
BseJI GATNNNNATC 1 cut(s) 993
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 5 cut(s) 68, 165, 417, 539, 779
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 2 cut(s) 102, 986
BseXI GCAGC 4 cut(s) 196, 452, 878, 886
BseYI CCCAGC 1 cut(s) 506
BshFI GGCC 2 cut(s) 264, 511
BshNI GGYRCC 1 cut(s) 749
BsiHKAI GWGCWC 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 4 cut(s) 57, 131, 342, 530
BsmI GAATGC 2 cut(s) 212, 647
BsnI GGCC 2 cut(s) 264, 511
Bso31I GGTCTC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 8, 112
Bsp1407I TGTACA 1 cut(s) 665
Bsp143I GATC 5 cut(s) 20, 43, 871, 982, 994
BspANI GGCC 2 cut(s) 264, 511
BspCNI CTCAG 5 cut(s) 67, 164, 416, 540, 778
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 22, 751
BspPI GGATC 3 cut(s) 15, 28, 38
BspT107I GGYRCC 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 665
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 3 cut(s) 24, 678, 679
BssMI GATC 5 cut(s) 20, 43, 871, 982, 994
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 680, 947
Bst4CI ACNGT 5 cut(s) 223, 244, 337, 365, 622
BstAUI TGTACA 1 cut(s) 665
BstC8I GCNNGC 1 cut(s) 1032
BstDEI CTNAG 7 cut(s) 54, 151, 229, 235, 403, 548, 765
BstF5I GGATG 4 cut(s) 429, 649, 849, 883
BstKTI GATC 5 cut(s) 23, 46, 874, 985, 997
BstMAI GTCTC 4 cut(s) 57, 131, 342, 530
BstMBI GATC 5 cut(s) 20, 43, 871, 982, 994
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 2 cut(s) 680, 947
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 678, 945
BstV1I GCAGC 4 cut(s) 196, 452, 878, 886
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 3 cut(s) 20, 43, 982
BstYI RGATCY 3 cut(s) 20, 43, 982
Bsu36I CCTNAGG 1 cut(s) 151
BsuRI GGCC 2 cut(s) 264, 511
BtgZI GCGATG 1 cut(s) 897
BtsCI GGATG 4 cut(s) 429, 649, 849, 883
BtsIMutI CAGTG 3 cut(s) 333, 370, 618
Cac8I GCNNGC 1 cut(s) 1032
CciI TCATGA 1 cut(s) 591
Cfr13I GGNCC 2 cut(s) 155, 509
Csp6I GTAC 4 cut(s) 162, 553, 666, 750
CviAII CATG 1 cut(s) 592
CviQI GTAC 4 cut(s) 162, 553, 666, 750
DdeI CTNAG 7 cut(s) 54, 151, 229, 235, 403, 548, 765
DpnI GATC 5 cut(s) 22, 45, 873, 984, 996
DpnII GATC 5 cut(s) 20, 43, 871, 982, 994
EaeI YGGCCR 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 678, 945
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 595
FatI CATG 1 cut(s) 591
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 994
FblI GTMKAC 2 cut(s) 225, 1013
Fnu4HI GCNGC 4 cut(s) 210, 441, 867, 900
FokI GGATG 4 cut(s) 436, 656, 856, 890
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 210, 441, 867, 900
FspBI CTAG 1 cut(s) 614
GluI GCNGC 4 cut(s) 210, 441, 867, 900
GsaI CCCAGC 1 cut(s) 510
HaeIII GGCC 2 cut(s) 264, 511
Hin1II CATG 1 cut(s) 595
HincII GTYRAC 1 cut(s) 1014
HindII GTYRAC 1 cut(s) 1014
HinfI GANTC 3 cut(s) 496, 706, 829
Hpy166II GTNNAC 2 cut(s) 226, 1014
Hpy188I TCNGA 7 cut(s) 34, 57, 121, 179, 341, 549, 1021
Hpy8I GTNNAC 2 cut(s) 226, 1014
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 2 cut(s) 587, 619
HpyCH4III ACNGT 5 cut(s) 223, 244, 337, 365, 622
HpyCH4IV ACGT 1 cut(s) 780
HpyCH4V TGCA 4 cut(s) 212, 647, 728, 1034
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 7 cut(s) 54, 151, 229, 235, 403, 548, 765
HpySE526I ACGT 1 cut(s) 780
Hsp92II CATG 1 cut(s) 595
KpnI GGTACC 1 cut(s) 753
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 5 cut(s) 20, 43, 871, 982, 994
LmnI GCTCC 2 cut(s) 79, 115
Lsp1109I GCAGC 4 cut(s) 196, 452, 878, 886
LweI GCATC 2 cut(s) 292, 634
MaeI CTAG 1 cut(s) 614
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 1 cut(s) 322
MalI GATC 5 cut(s) 22, 45, 873, 984, 996
MboI GATC 5 cut(s) 20, 43, 871, 982, 994
MboII GAAGA 6 cut(s) 99, 295, 391, 949, 962, 992
MflI RGATCY 3 cut(s) 20, 43, 982
MhlI GDGCHC 2 cut(s) 8, 112
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 4 cut(s) 90, 519, 629, 905
MluNI TGGCCA 1 cut(s) 264
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 8 cut(s) 123, 160, 266, 543, 785, 856, 964, 1053
Mox20I TGGCCA 1 cut(s) 264
Mph1103I ATGCAT 1 cut(s) 649
MscI TGGCCA 1 cut(s) 264
MseI TTAA 2 cut(s) 480, 525
Msp20I TGGCCA 1 cut(s) 264
MspA1I CMGCKG 2 cut(s) 443, 869
MspR9I CCNGG 2 cut(s) 680, 947
Mva1269I GAATGC 2 cut(s) 212, 647
MvaI CCWGG 2 cut(s) 680, 947
MwoI GCNNNNNNNGC 1 cut(s) 614
NdeI CATATG 1 cut(s) 492
NdeII GATC 5 cut(s) 20, 43, 871, 982, 994
NlaIII CATG 1 cut(s) 595
NlaIV GGNNCC 2 cut(s) 22, 751
NmeAIII GCCGAG 1 cut(s) 811
NsiI ATGCAT 1 cut(s) 649
PagI TCATGA 1 cut(s) 591
PasI CCCWGGG 1 cut(s) 679
PctI GAATGC 2 cut(s) 212, 647
PfeI GAWTC 2 cut(s) 496, 829
PkrI GCNGC 4 cut(s) 211, 442, 868, 901
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
PshAI GACNNNNGTC 1 cut(s) 335
Psp6I CCWGG 2 cut(s) 678, 945
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 678, 945
PspN4I GGNNCC 2 cut(s) 22, 751
PspPI GGNCC 2 cut(s) 155, 509
PsuI RGATCY 3 cut(s) 20, 43, 982
PvuII CAGCTG 2 cut(s) 443, 869
RsaI GTAC 4 cut(s) 163, 554, 667, 751
RsaNI GTAC 4 cut(s) 162, 553, 666, 750
SalI GTCGAC 1 cut(s) 1012
SaqAI TTAA 2 cut(s) 480, 525
SatI GCNGC 4 cut(s) 210, 441, 867, 900
Sau3AI GATC 5 cut(s) 20, 43, 871, 982, 994
Sau96I GGNCC 2 cut(s) 155, 509
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 2 cut(s) 680, 947
SduI GDGCHC 2 cut(s) 8, 112
SfaNI GCATC 2 cut(s) 292, 634
SinI GGWCC 1 cut(s) 155
SmlI CTYRAG 4 cut(s) 272, 430, 708, 1044
SmoI CTYRAG 4 cut(s) 272, 430, 708, 1044
Sse9I AATT 4 cut(s) 90, 519, 629, 905
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 2 cut(s) 678, 945
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 5 cut(s) 223, 244, 337, 365, 622
TaiI ACGT 1 cut(s) 783
TaqI TCGA 6 cut(s) 8, 135, 534, 704, 1013, 1050
TasI AATT 4 cut(s) 90, 519, 629, 905
TatI WGTACW 1 cut(s) 665
TfiI GAWTC 2 cut(s) 496, 829
Tru1I TTAA 2 cut(s) 480, 525
Tru9I TTAA 2 cut(s) 480, 525
TscAI CASTG 3 cut(s) 340, 370, 625
TseI GCWGC 4 cut(s) 209, 440, 866, 899
TspDTI ATGAA 1 cut(s) 509
TspRI CASTG 3 cut(s) 340, 370, 625
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 3 cut(s) 90, 519, 905
XmiI GTMKAC 2 cut(s) 225, 1013
XspI CTAG 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.