Rh5CG389900

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002844
Physical Location & Seq
Reverse (-)
51382428 .. 51383609
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG389900.1

Sequence Viewer

Length: 1056 bp
ATGGATATCAATAGAATGAGACCATCATTGCGTCCAGGTCTAAGAGATCCTTCAGCTCAAACAAATGCAAGGAATATTGGTCATGGTCCAAAGAGTAGAATATATCGTCGTACTAGAAGTGCCCCTCTTGCTCATTACAGACCCGGAGAGGCAAAATGCGTTGCCGCAGTTCAACAACGTTCTCAATCCGTTATGCACTTGAGTTTTGTTAAAGTAGCTATATTCTTGACTGTCTACTTAGGAGTGGGAACTATGTGCTTCTACTTCGTCAGGCACCAGCTCGAGGGAGACAAGACAAATGCAGTTCTTGATGCTGTTTATTTCTGTGTTGTGACCATGGTTACTCTCGGATATGGAGACCTAGTGCCCAACAGCACACTAGCGAAACTACTGGCTTGTGCTTTTGTCTTTACAGGAATGGCTCTTGTCGCATTGATCTTGAGCAAAGCAGCAGACTATTTGGTAGAGAGGCAAGAAATGTTGCTTACCAAAGCCCTGCATGGGCATCAGAAGTTTGGTCCAATTGAAGTCCATAAAGAAGTCGAGCCTAAGAGTGTGAGGTACAAATGTGTTAAGGTCTTTATCCTTCTTTTGGTTCTTATGGCTTCTGGCACGATCTTCCTAGTTAAAGTTGAGAAATTCGACCTTGTGGATGCATTTTATTGCGTTTGTTCCACCATCACAACCCTGGGATATGGAGATAAGAGCTTCTCAACTGAAGCCGGGCGTGTTTTTGCAGTGTTCTGGATATTGGCAAGTACCACCTGTTTGGCTCAGTTTTTCCTCTACATAGCTGAGCTAAACACCCAGCATAGACAAAAGGCATTGGTTAACTTGGTTCTTACTCGTGAAGTTACCAAAGTTGATTTGGAGGCAGCTGATCTTGATGATGATGGGCTTGTTGGGGCTGCTGAGTTTGTCATATATAAACTCAAAGAGATGGGAAAGATTAACCAAGAAGATGTCAGACTTGTAATGAAGGAGTTTGAAGCTCTTGATGTCGACCAGTCTGGAACCTTGTCGATTAAAGATGTAACGCTTGCTCAATCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

351

Amino Acids

39.04

Weight (kDa)

8.66

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 75 - 155 1.4e-15 Ion channel
Ion_trans_2 PF07885 196 - 268 2.4e-15 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 273
AccI GTMKAC 2 cut(s) 234, 1002
AciI CCGC 1 cut(s) 165
AclI AACGTT 1 cut(s) 178
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 638
AcuI CTGAAG 2 cut(s) 36, 738
AfaI GTAC 3 cut(s) 112, 563, 760
AfiI CCNNNNNNNGG 3 cut(s) 283, 501, 592
AgsI TTSAA 3 cut(s) 173, 527, 989
AjnI CCWGG 2 cut(s) 34, 687
AluBI AGCT 8 cut(s) 56, 218, 280, 708, 794, 799, 878, 992
AluI AGCT 8 cut(s) 56, 218, 280, 708, 794, 799, 878, 992
Alw26I GTCTC 3 cut(s) 13, 282, 351
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 281
ApeKI GCWGC 3 cut(s) 449, 875, 908
ApoI RAATTY 1 cut(s) 638
AspS9I GGNCC 2 cut(s) 86, 518
AsuC2I CCSGG 2 cut(s) 144, 724
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 86, 518
BaeGI GKGCMC 2 cut(s) 124, 369
BaeI ACNNNNGTAYC 2 cut(s) 553, 586
BanI GGYRCC 1 cut(s) 273
BauI CACGAG 1 cut(s) 846
BbvI GCAGC 3 cut(s) 461, 887, 895
BccI CCATC 4 cut(s) 31, 686, 887, 934
BciT130I CCWGG 2 cut(s) 36, 689
BcnI CCSGG 2 cut(s) 144, 724
BcoDI GTCTC 3 cut(s) 13, 282, 351
BfaI CTAG 4 cut(s) 114, 362, 380, 623
BisI GCNGC 4 cut(s) 165, 450, 876, 909
BlpI GCTNAGC 1 cut(s) 795
BlsI GCNGC 4 cut(s) 166, 451, 877, 910
Bme1390I CCNGG 4 cut(s) 36, 144, 689, 724
Bme18I GGWCC 2 cut(s) 86, 518
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 86, 518
BmiI GGNNCC 2 cut(s) 275, 1015
BmrFI CCNGG 4 cut(s) 36, 144, 689, 724
BmsI GCATC 3 cut(s) 301, 514, 643
Bpu1102I GCTNAGC 1 cut(s) 795
BpuEI CTTGAG 2 cut(s) 220, 460
BpuMI CCSGG 2 cut(s) 144, 724
BsaI GGTCTC 2 cut(s) 13, 351
BsaJI CCNNGG 3 cut(s) 336, 687, 688
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 501, 592
Bse1I ACTGG 2 cut(s) 396, 1006
Bse3DI GCAATG 1 cut(s) 26
BseBI CCWGG 2 cut(s) 36, 689
BseDI CCNNGG 3 cut(s) 336, 687, 688
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 3 cut(s) 283, 501, 592
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 3 cut(s) 786, 788, 903
BseNI ACTGG 2 cut(s) 396, 1006
BseSI GKGCMC 2 cut(s) 124, 369
BseXI GCAGC 3 cut(s) 461, 887, 895
BseYI CCCAGC 1 cut(s) 807
BshNI GGYRCC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 144, 723
BslI CCNNNNNNNGG 3 cut(s) 283, 501, 592
BsmAI GTCTC 3 cut(s) 13, 282, 351
Bso31I GGTCTC 2 cut(s) 13, 351
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 124, 369
Bsp143I GATC 4 cut(s) 46, 435, 615, 880
Bsp1720I GCTNAGC 1 cut(s) 795
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 3 cut(s) 787, 787, 904
BspLI GGNNCC 2 cut(s) 275, 1015
BspPI GGATC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 273
BspTNI GGTCTC 2 cut(s) 13, 351
BsrDI GCAATG 1 cut(s) 26
BsrI ACTGG 2 cut(s) 396, 1006
BssECI CCNNGG 3 cut(s) 336, 687, 688
BssMI GATC 4 cut(s) 46, 435, 615, 880
BssSI CACGAG 1 cut(s) 846
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 846
Bst2UI CCWGG 2 cut(s) 36, 689
Bst4CI ACNGT 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 1041
BstDEI CTNAG 6 cut(s) 41, 238, 549, 774, 795, 912
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 658
BstKTI GATC 4 cut(s) 49, 438, 618, 883
BstMAI GTCTC 3 cut(s) 13, 282, 351
BstMBI GATC 4 cut(s) 46, 435, 615, 880
BstMWI GCNNNNNNNGC 2 cut(s) 128, 428
BstNI CCWGG 2 cut(s) 36, 689
BstSCI CCNGG 4 cut(s) 34, 142, 687, 722
BstSLI GKGCMC 2 cut(s) 124, 369
BstV1I GCAGC 3 cut(s) 461, 887, 895
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 769
BstYI RGATCY 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 658
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 1 cut(s) 744
Cac8I GCNNGC 1 cut(s) 1041
Cfr13I GGNCC 2 cut(s) 86, 518
CseI GACGC 1 cut(s) 20
Csp6I GTAC 3 cut(s) 111, 562, 759
CviAII CATG 3 cut(s) 83, 337, 500
CviQI GTAC 3 cut(s) 111, 562, 759
DdeI CTNAG 6 cut(s) 41, 238, 549, 774, 795, 912
DpnI GATC 4 cut(s) 48, 437, 617, 882
DpnII GATC 4 cut(s) 46, 435, 615, 880
Eco130I CCWWGG 1 cut(s) 336
Eco31I GGTCTC 2 cut(s) 13, 351
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 2 cut(s) 86, 518
Eco57I CTGAAG 2 cut(s) 36, 738
Eco88I CYCGRG 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 34, 687
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 3 cut(s) 86, 340, 503
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 3 cut(s) 82, 336, 499
FblI GTMKAC 2 cut(s) 234, 1002
Fnu4HI GCNGC 4 cut(s) 165, 450, 876, 909
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 4 cut(s) 165, 450, 876, 909
FspBI CTAG 4 cut(s) 114, 362, 380, 623
GluI GCNGC 4 cut(s) 165, 450, 876, 909
GsaI CCCAGC 1 cut(s) 811
HapII CCGG 2 cut(s) 144, 723
HgaI GACGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 86, 340, 503
HincII GTYRAC 2 cut(s) 832, 1003
HindII GTYRAC 2 cut(s) 832, 1003
HpaI GTTAAC 1 cut(s) 832
HpaII CCGG 2 cut(s) 144, 723
Hpy166II GTNNAC 3 cut(s) 235, 832, 1003
Hpy188I TCNGA 3 cut(s) 350, 510, 968
Hpy188III TCNNGA 8 cut(s) 226, 308, 439, 745, 848, 884, 995, 1011
Hpy8I GTNNAC 3 cut(s) 235, 832, 1003
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 3 cut(s) 60, 596, 973
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 6 cut(s) 68, 196, 302, 499, 656, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 428
HpyF3I CTNAG 6 cut(s) 41, 238, 549, 774, 795, 912
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 3 cut(s) 86, 340, 503
KspAI GTTAAC 1 cut(s) 832
Kzo9I GATC 4 cut(s) 46, 435, 615, 880
Lsp1109I GCAGC 3 cut(s) 461, 887, 895
LweI GCATC 3 cut(s) 301, 514, 643
MaeI CTAG 4 cut(s) 114, 362, 380, 623
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 4 cut(s) 331, 340, 853, 1033
MalI GATC 4 cut(s) 48, 437, 617, 882
MboI GATC 4 cut(s) 46, 435, 615, 880
MboII GAAGA 2 cut(s) 610, 971
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 2 cut(s) 124, 369
MluCI AATT 2 cut(s) 522, 638
MnlI CCTC 7 cut(s) 135, 142, 277, 462, 552, 794, 865
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 7 cut(s) 210, 573, 627, 831, 951, 1026, 1054
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 2 cut(s) 144, 723
MspR9I CCNGG 4 cut(s) 36, 144, 689, 724
MunI CAATTG 1 cut(s) 522
MvaI CCWGG 2 cut(s) 36, 689
MwoI GCNNNNNNNGC 2 cut(s) 128, 428
NciI CCSGG 2 cut(s) 144, 724
NcoI CCATGG 1 cut(s) 336
NdeII GATC 4 cut(s) 46, 435, 615, 880
NlaIII CATG 3 cut(s) 86, 340, 503
NlaIV GGNNCC 2 cut(s) 275, 1015
NmuCI GTSAC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 658
PaeR7I CTCGAG 1 cut(s) 281
PasI CCCWGGG 1 cut(s) 688
PkrI GCNGC 4 cut(s) 166, 451, 877, 910
Psp1406I AACGTT 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 34, 687
PspFI CCCAGC 1 cut(s) 807
PspGI CCWGG 2 cut(s) 34, 687
PspN4I GGNNCC 2 cut(s) 275, 1015
PspPI GGNCC 2 cut(s) 86, 518
PspXI VCTCGAGB 1 cut(s) 281
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 3 cut(s) 112, 563, 760
RsaNI GTAC 3 cut(s) 111, 562, 759
SalI GTCGAC 1 cut(s) 1001
SaqAI TTAA 7 cut(s) 210, 573, 627, 831, 951, 1026, 1054
SatI GCNGC 4 cut(s) 165, 450, 876, 909
Sau3AI GATC 4 cut(s) 46, 435, 615, 880
Sau96I GGNCC 2 cut(s) 86, 518
ScrFI CCNGG 4 cut(s) 36, 144, 689, 724
SduI GDGCHC 2 cut(s) 124, 369
SfaNI GCATC 3 cut(s) 301, 514, 643
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 2 cut(s) 86, 518
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 3 cut(s) 199, 281, 439
SmoI CTYRAG 3 cut(s) 199, 281, 439
Sse9I AATT 2 cut(s) 522, 638
SsiI CCGC 1 cut(s) 165
SspI AATATT 1 cut(s) 76
SspMI CTAG 4 cut(s) 114, 362, 380, 623
StyD4I CCNGG 4 cut(s) 34, 142, 687, 722
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 181
TaqI TCGA 5 cut(s) 282, 543, 642, 1002, 1022
TasI AATT 2 cut(s) 522, 638
TauI GCSGC 1 cut(s) 167
Tru1I TTAA 7 cut(s) 210, 573, 627, 831, 951, 1026, 1054
Tru9I TTAA 7 cut(s) 210, 573, 627, 831, 951, 1026, 1054
TscAI CASTG 1 cut(s) 744
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 449, 875, 908
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 992
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 1 cut(s) 744
VpaK11BI GGWCC 2 cut(s) 86, 518
XapI RAATTY 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 2 cut(s) 685, 865
XhoI CTCGAG 1 cut(s) 281
XmiI GTMKAC 2 cut(s) 234, 1002
XspI CTAG 4 cut(s) 114, 362, 380, 623
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.