Rh5CG390000

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002844
Physical Location & Seq
Reverse (-)
51387016 .. 51389045
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG390000.1

Sequence Viewer

Length: 1050 bp
ATGGATAGGAATGGGATTCGAGAGTCCTTGCTTCCAGGGCTCGTAGATCCTTCACCTCAAAAAAAGACAAAGAATGTTCCAAAGAGTAGAGGATTTCGCCGTTGTAAAAGTGCTCCTCTTGCTGAGCATGCACCTCTAGGGGCAAACCGCATTGGCTCAGTTCAACGTTCTGAATCTATTATACACCCGAGTTTTGTTACAGTAGCTATATTCTTGACTGCCTACTTAGGATTGGGAACTATATGCTTCTACCTCGTCAGGCACCAGATCCAGGGAGTGAAGACAAATGGAATTCTTGATGCTGTTTATTTCTGTATTGTGACAATGACTACTCTCGGATATGGAGACCTAGTGCCTGACAGCACTCTAGCGAAACTACTGGCCTGTGCTTTTGTCTTTACAGGAATGGCTCTCGTTGGATTGATCTTGACCAAAGCAGCAGACTATTTGGTAGAGAAACAAGAAATATTGCTTATCAAAGCCTTCCATGTGCATCAGAAATTTGGTCAAACTGACGTCCTTAAAGAAGTTGAGACTAATAGTATGAGGTACAAATGTATTACAGTCTTCATCCTTCTTTTGGTACTTATGATTTCTGGCACGATCTTCCTAGCTACTGTTGAGAAATTGGACCTTGTGGATGCATTTTATTGCGTTTGTTCCACTATCACAACCCTGGGATATGGAGATAAGAGCTTCTCAACTGAAGCTGGGCGTGTTTTTGCGGTTTTCTGGATATTGACAAGTACTATCTGTTTAGCTCAGTTTTTGCTCTACATTGCCGAGCTAAACACCCAGCATAAACAAAGGGCACTGGTTAAATTTGTTCTCACTCGTGCGATGACCAACGTAGATTTGGAGGCAGCCGATCTTGACGATGATGGGGTTGTTGGGGCTGCTGAGTTTGTCATATATAAACTCAAAGAGATGGGGAAGATTAATCAAGAAGATATTAGACTTGTAATGGAGGAGTTTGATGCTCTTGATGTTGATCAGTCTGGAGCCTTGTCGGTTTCAGATCTAACACTTGCTCAATCATCTCCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

349

Amino Acids

38.39

Weight (kDa)

6.1

Isoelectric Point (pI)

26.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 71 - 151 6.3e-17 Ion channel
Ion_trans_2 PF07885 191 - 264 6.1e-16 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 261
AciI CCGC 2 cut(s) 148, 725
AclI AACGTT 1 cut(s) 166
AclWI GGATC 2 cut(s) 41, 262
AcsI RAATTY 3 cut(s) 291, 500, 821
AcuI CTGAAG 1 cut(s) 726
AcyI GRCGYC 1 cut(s) 516
AfaI GTAC 3 cut(s) 551, 585, 748
AfiI CCNNNNNNNGG 2 cut(s) 271, 580
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 3 cut(s) 34, 270, 675
AluBI AGCT 6 cut(s) 206, 614, 696, 710, 761, 787
AluI AGCT 6 cut(s) 206, 614, 696, 710, 761, 787
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 339, 527
AlwI GGATC 2 cut(s) 41, 262
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 437, 863, 896
ApoI RAATTY 3 cut(s) 291, 500, 821
AseI ATTAAT 1 cut(s) 939
AspS9I GGNCC 1 cut(s) 631
AsuHPI GGTGA 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 814
BaeI ACNNNNGTAYC 2 cut(s) 541, 574
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 834
BbsI GAAGAC 2 cut(s) 287, 559
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 449, 875, 883
BccI CCATC 2 cut(s) 875, 922
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 3 cut(s) 36, 272, 677
BclI TGATCA 1 cut(s) 991
BcoDI GTCTC 2 cut(s) 339, 527
BfaI CTAG 4 cut(s) 137, 350, 368, 611
BglII AGATCT 1 cut(s) 1018
BisI GCNGC 3 cut(s) 438, 864, 897
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 3 cut(s) 439, 865, 898
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 3 cut(s) 36, 272, 677
Bme18I GGWCC 1 cut(s) 631
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 2 cut(s) 263, 1003
BmrFI CCNGG 3 cut(s) 36, 272, 677
BmsI GCATC 4 cut(s) 289, 502, 631, 967
BpiI GAAGAC 2 cut(s) 287, 559
BpmI CTGGAG 1 cut(s) 1020
Bpu1102I GCTNAGC 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 990
BsaHI GRCGYC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 4 cut(s) 35, 271, 675, 676
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 580
Bse1I ACTGG 2 cut(s) 384, 819
Bse3DI GCAATG 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 3 cut(s) 36, 272, 677
BseDI CCNNGG 4 cut(s) 35, 271, 675, 676
BseGI GGATG 2 cut(s) 570, 646
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 2 cut(s) 271, 580
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 4 cut(s) 114, 171, 776, 891
BseNI ACTGG 2 cut(s) 384, 819
BseRI GAGGAG 3 cut(s) 105, 983, 1032
BseSI GKGCMC 1 cut(s) 814
BseXI GCAGC 3 cut(s) 449, 875, 883
BseYI CCCAGC 2 cut(s) 710, 795
BshFI GGCC 1 cut(s) 383
BshNI GGYRCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 271, 580
BsmAI GTCTC 2 cut(s) 339, 527
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 339
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 3 cut(s) 42, 115, 814
Bsp143I GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
Bsp1720I GCTNAGC 1 cut(s) 123
BspACI CCGC 2 cut(s) 148, 725
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 4 cut(s) 115, 170, 775, 892
BspLI GGNNCC 2 cut(s) 263, 1003
BspPI GGATC 2 cut(s) 41, 262
BspT107I GGYRCC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 777
BsrI ACTGG 2 cut(s) 384, 819
BssECI CCNNGG 4 cut(s) 35, 271, 675, 676
BssMI GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
BssNI GRCGYC 1 cut(s) 516
BssSI CACGAG 1 cut(s) 834
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 3 cut(s) 36, 272, 677
Bst4CI ACNGT 3 cut(s) 202, 565, 619
BstACI GRCGYC 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 5 cut(s) 123, 157, 226, 762, 900
BstF5I GGATG 2 cut(s) 570, 646
BstKTI GATC 7 cut(s) 49, 270, 426, 606, 871, 994, 1021
BstMAI GTCTC 2 cut(s) 339, 527
BstMBI GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 37, 119, 128
BstNI CCWGG 3 cut(s) 36, 272, 677
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 3 cut(s) 34, 270, 675
BstSLI GKGCMC 1 cut(s) 814
BstV1I GCAGC 3 cut(s) 449, 875, 883
BstV2I GAAGAC 2 cut(s) 287, 559
BstX2I RGATCY 3 cut(s) 46, 267, 1018
BstYI RGATCY 3 cut(s) 46, 267, 1018
BsuRI GGCC 1 cut(s) 383
BtgZI GCGATG 1 cut(s) 854
BtsCI GGATG 2 cut(s) 570, 646
BtsIMutI CAGTG 1 cut(s) 812
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 631
Csp6I GTAC 3 cut(s) 550, 584, 747
CviAII CATG 2 cut(s) 128, 488
CviQI GTAC 3 cut(s) 550, 584, 747
DdeI CTNAG 5 cut(s) 123, 157, 226, 762, 900
DpnI GATC 7 cut(s) 48, 269, 425, 605, 870, 993, 1020
DpnII GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 726
Eco88I CYCGRG 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 291
EcoRII CCWGG 3 cut(s) 34, 270, 675
EcoT22I ATGCAT 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 2 cut(s) 131, 491
FatI CATG 2 cut(s) 127, 487
FbaI TGATCA 1 cut(s) 991
Fnu4HI GCNGC 3 cut(s) 438, 864, 897
FokI GGATG 2 cut(s) 557, 653
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 3 cut(s) 438, 864, 897
FspBI CTAG 4 cut(s) 137, 350, 368, 611
GluI GCNGC 3 cut(s) 438, 864, 897
GsaI CCCAGC 2 cut(s) 714, 799
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 2 cut(s) 131, 491
HinfI GANTC 3 cut(s) 16, 23, 173
HphI GGTGA 1 cut(s) 45
Hpy188I TCNGA 4 cut(s) 172, 338, 498, 1018
Hpy188III TCNNGA 9 cut(s) 20, 214, 296, 427, 733, 872, 944, 983, 999
HpyAV CCTTC 3 cut(s) 60, 493, 584
HpyCH4III ACNGT 3 cut(s) 202, 565, 619
HpyCH4IV ACGT 3 cut(s) 166, 516, 849
HpyCH4V TGCA 3 cut(s) 131, 493, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 119, 128
HpyF3I CTNAG 5 cut(s) 123, 157, 226, 762, 900
HpySE526I ACGT 3 cut(s) 166, 516, 849
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 2 cut(s) 131, 491
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
LmnI GCTCC 2 cut(s) 118, 1001
Lsp1109I GCAGC 3 cut(s) 449, 875, 883
LweI GCATC 4 cut(s) 289, 502, 631, 967
MaeI CTAG 4 cut(s) 137, 350, 368, 611
MaeII ACGT 3 cut(s) 166, 516, 849
MaeIII GTNAC 2 cut(s) 196, 319
MalI GATC 7 cut(s) 48, 269, 425, 605, 870, 993, 1020
MboI GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
MboII GAAGA 5 cut(s) 292, 559, 598, 946, 959
MflI RGATCY 3 cut(s) 46, 267, 1018
MhlI GDGCHC 3 cut(s) 42, 115, 814
MluCI AATT 4 cut(s) 291, 500, 626, 821
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 8 cut(s) 66, 83, 126, 144, 263, 540, 853, 961
Mph1103I ATGCAT 1 cut(s) 646
MseI TTAA 3 cut(s) 522, 819, 939
MspR9I CCNGG 3 cut(s) 36, 272, 677
MvaI CCWGG 3 cut(s) 36, 272, 677
MwoI GCNNNNNNNGC 3 cut(s) 37, 119, 128
NdeII GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
NlaIII CATG 2 cut(s) 131, 491
NlaIV GGNNCC 2 cut(s) 263, 1003
NmeAIII GCCGAG 1 cut(s) 808
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 1 cut(s) 131
PaeI GCATGC 1 cut(s) 131
PasI CCCWGGG 1 cut(s) 676
PfeI GAWTC 2 cut(s) 16, 173
PkrI GCNGC 3 cut(s) 439, 865, 898
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 939
Psp1406I AACGTT 1 cut(s) 166
Psp6I CCWGG 3 cut(s) 34, 270, 675
PspFI CCCAGC 2 cut(s) 710, 795
PspGI CCWGG 3 cut(s) 34, 270, 675
PspN4I GGNNCC 2 cut(s) 263, 1003
PspPI GGNCC 1 cut(s) 631
PsuI RGATCY 3 cut(s) 46, 267, 1018
RsaI GTAC 3 cut(s) 551, 585, 748
RsaNI GTAC 3 cut(s) 550, 584, 747
SaqAI TTAA 3 cut(s) 522, 819, 939
SatI GCNGC 3 cut(s) 438, 864, 897
Sau3AI GATC 7 cut(s) 46, 267, 423, 603, 868, 991, 1018
Sau96I GGNCC 1 cut(s) 631
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 36, 272, 677
SduI GDGCHC 3 cut(s) 42, 115, 814
SfaNI GCATC 4 cut(s) 289, 502, 631, 967
SinI GGWCC 1 cut(s) 631
SphI GCATGC 1 cut(s) 131
Sse9I AATT 4 cut(s) 291, 500, 626, 821
SsiI CCGC 2 cut(s) 148, 725
SspI AATATT 1 cut(s) 468
SspMI CTAG 4 cut(s) 137, 350, 368, 611
StyD4I CCNGG 3 cut(s) 34, 270, 675
TaaI ACNGT 3 cut(s) 202, 565, 619
TaiI ACGT 3 cut(s) 169, 519, 852
TaqI TCGA 1 cut(s) 19
TasI AATT 4 cut(s) 291, 500, 626, 821
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 2 cut(s) 16, 173
Tru1I TTAA 3 cut(s) 522, 819, 939
Tru9I TTAA 3 cut(s) 522, 819, 939
TscAI CASTG 1 cut(s) 819
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 437, 863, 896
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 559
TspRI CASTG 1 cut(s) 819
VpaK11BI GGWCC 1 cut(s) 631
VspI ATTAAT 1 cut(s) 939
XapI RAATTY 3 cut(s) 291, 500, 821
XceI RCATGY 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XspI CTAG 4 cut(s) 137, 350, 368, 611
ZraI GACGTC 1 cut(s) 517
ZrmI AGTACT 1 cut(s) 748
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.