Rmu_co8436473.1_g000001

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8436473.1
OG0002844
Physical Location & Seq
Forward (+)
1 .. 1130
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8436473.1_g000001.1.cds

Sequence Viewer

Length: 981 bp
aacaatgttccaaagagtagaggatttcgccgttgtaaaagtgctcctcttgctgagtatgcacctctagagccaaaccgcattggctcagttcaacgttctgaatctattatacacccgagttttgttaaagtagctatattcttgactgtctacttaggattgggaactatatgcttctacctcgtcaggcaccagatcgagggagtgaagacgaatggaattcttgatgctgtttatttctgtattgtgacaatgactactctcggatatggagacctagtgcctgacagcactctagcgaaactactcgcctgtgcttttgtcttcacaggaatggctctcgttggattgatcttgaccaaagcagcagactatttggtagagaaacaagaaatattgcttatcaaagccttgcatgtgcatcagaaatttggtcaaactgacgtccttaaagaagttgagactaatagtatgaggtacaaatgtattacagtcttcatccttcttttggtacttatgatttctggcacgatcttcctagctactgttgagaaattggaccttgtggatgcattttattgcgtttgttccaccatcacaaccctgggatatggagataagagcttctcaactgaagctgggcgtgtttttgcggttttctggatattgacaagtactatctgtttagctcagtttttgctctacattgccgagctaaacacccagcataaacaaagggcactggttaaatttgttctcactcgtgcgatgaccaacgtagatttggaggcagctgatcttgatgatgatggggttgttggggctgctgagtttgtcatatataaactcaaagagatggggaagattaatcaagaagatattagacttgtaatggaggagtttgatgctcttgatgttgatcagtctggagccttgtcggtttcagatctaacacttgctcaatcatctcctccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

326

Amino Acids

35.99

Weight (kDa)

5.46

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 450
AccB1I GGYRCC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 153
AciI CCGC 2 cut(s) 79, 656
AclI AACGTT 1 cut(s) 97
AcsI RAATTY 3 cut(s) 222, 431, 752
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 3 cut(s) 482, 516, 679
AfiI CCNNNNNNNGG 2 cut(s) 202, 511
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 606
AluBI AGCT 7 cut(s) 137, 545, 627, 641, 692, 718, 797
AluI AGCT 7 cut(s) 137, 545, 627, 641, 692, 718, 797
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 270, 458
Ama87I CYCGRG 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 368, 794, 827
ApoI RAATTY 3 cut(s) 222, 431, 752
AseI ATTAAT 1 cut(s) 870
AspS9I GGNCC 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 1 cut(s) 562
BaeGI GKGCMC 1 cut(s) 745
BaeI ACNNNNGTAYC 2 cut(s) 472, 505
BanI GGYRCC 1 cut(s) 192
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 3 cut(s) 218, 319, 490
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 380, 806, 814
BccI CCATC 3 cut(s) 605, 806, 853
BceAI ACGGC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 608
BclI TGATCA 1 cut(s) 922
BcoDI GTCTC 2 cut(s) 270, 458
BfaI CTAG 4 cut(s) 68, 281, 299, 542
BglII AGATCT 1 cut(s) 949
BisI GCNGC 3 cut(s) 369, 795, 828
BlsI GCNGC 3 cut(s) 370, 796, 829
BmcAI AGTACT 1 cut(s) 679
Bme1390I CCNGG 1 cut(s) 608
Bme18I GGWCC 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 2 cut(s) 194, 934
BmrFI CCNGG 1 cut(s) 608
BmsI GCATC 4 cut(s) 220, 433, 562, 898
BpiI GAAGAC 3 cut(s) 218, 319, 490
BpmI CTGGAG 1 cut(s) 951
BsaBI GATNNNNATC 1 cut(s) 921
BsaHI GRCGYC 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 606, 607
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 511
Bse1I ACTGG 1 cut(s) 750
Bse3DI GCAATG 1 cut(s) 708
Bse8I GATNNNNATC 1 cut(s) 921
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 2 cut(s) 606, 607
BseGI GGATG 2 cut(s) 501, 577
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 2 cut(s) 202, 511
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 4 cut(s) 45, 102, 707, 822
BseNI ACTGG 1 cut(s) 750
BseRI GAGGAG 3 cut(s) 36, 914, 963
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 3 cut(s) 380, 806, 814
BseYI CCCAGC 2 cut(s) 641, 726
BshNI GGYRCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 202, 511
BsmAI GTCTC 2 cut(s) 270, 458
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 46, 745
Bsp143I GATC 6 cut(s) 198, 354, 534, 799, 922, 949
BspACI CCGC 2 cut(s) 79, 656
BspCNI CTCAG 4 cut(s) 46, 101, 706, 823
BspLI GGNNCC 2 cut(s) 194, 934
BspT107I GGYRCC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 1 cut(s) 750
BssECI CCNNGG 2 cut(s) 606, 607
BssMI GATC 6 cut(s) 198, 354, 534, 799, 922, 949
BssNI GRCGYC 1 cut(s) 447
BssSI CACGAG 1 cut(s) 765
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 3 cut(s) 151, 496, 550
BstACI GRCGYC 1 cut(s) 447
BstDEI CTNAG 5 cut(s) 54, 88, 157, 693, 831
BstF5I GGATG 2 cut(s) 501, 577
BstKTI GATC 6 cut(s) 201, 357, 537, 802, 925, 952
BstMAI GTCTC 2 cut(s) 270, 458
BstMBI GATC 6 cut(s) 198, 354, 534, 799, 922, 949
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 606
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 3 cut(s) 380, 806, 814
BstV2I GAAGAC 3 cut(s) 218, 319, 490
BstX2I RGATCY 1 cut(s) 949
BstYI RGATCY 1 cut(s) 949
BtgZI GCGATG 1 cut(s) 785
BtsCI GGATG 2 cut(s) 501, 577
BtsIMutI CAGTG 1 cut(s) 743
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 3 cut(s) 481, 515, 678
CviAII CATG 1 cut(s) 419
CviQI GTAC 3 cut(s) 481, 515, 678
DdeI CTNAG 5 cut(s) 54, 88, 157, 693, 831
DpnI GATC 6 cut(s) 200, 356, 536, 801, 924, 951
DpnII GATC 6 cut(s) 198, 354, 534, 799, 922, 949
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 606
EcoT22I ATGCAT 1 cut(s) 577
FaeI CATG 1 cut(s) 422
FatI CATG 1 cut(s) 418
FbaI TGATCA 1 cut(s) 922
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 369, 795, 828
FokI GGATG 2 cut(s) 488, 584
Fsp4HI GCNGC 3 cut(s) 369, 795, 828
FspBI CTAG 4 cut(s) 68, 281, 299, 542
GluI GCNGC 3 cut(s) 369, 795, 828
GsaI CCCAGC 2 cut(s) 645, 730
GsuI CTGGAG 1 cut(s) 951
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 1 cut(s) 422
HinfI GANTC 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 4 cut(s) 103, 269, 429, 949
Hpy188III TCNNGA 9 cut(s) 68, 145, 227, 358, 664, 803, 875, 914, 930
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 515
HpyCH4III ACNGT 3 cut(s) 151, 496, 550
HpyCH4IV ACGT 3 cut(s) 97, 447, 780
HpyCH4V TGCA 4 cut(s) 62, 418, 424, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 5 cut(s) 54, 88, 157, 693, 831
HpySE526I ACGT 3 cut(s) 97, 447, 780
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 1 cut(s) 422
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 6 cut(s) 198, 354, 534, 799, 922, 949
LmnI GCTCC 2 cut(s) 49, 932
Lsp1109I GCAGC 3 cut(s) 380, 806, 814
LweI GCATC 4 cut(s) 220, 433, 562, 898
MaeI CTAG 4 cut(s) 68, 281, 299, 542
MaeII ACGT 3 cut(s) 97, 447, 780
MaeIII GTNAC 1 cut(s) 250
MalI GATC 6 cut(s) 200, 356, 536, 801, 924, 951
MboI GATC 6 cut(s) 198, 354, 534, 799, 922, 949
MboII GAAGA 6 cut(s) 223, 319, 490, 529, 877, 890
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 2 cut(s) 46, 745
MluCI AATT 4 cut(s) 222, 431, 557, 752
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 8 cut(s) 14, 57, 75, 194, 196, 471, 784, 892
Mph1103I ATGCAT 1 cut(s) 577
MseI TTAA 4 cut(s) 129, 453, 750, 870
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 797
MspR9I CCNGG 1 cut(s) 608
MvaI CCWGG 1 cut(s) 608
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NdeII GATC 6 cut(s) 198, 354, 534, 799, 922, 949
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 2 cut(s) 194, 934
NmeAIII GCCGAG 1 cut(s) 739
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 1 cut(s) 422
PasI CCCWGGG 1 cut(s) 607
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 370, 796, 829
PshBI ATTAAT 1 cut(s) 870
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 606
PspFI CCCAGC 2 cut(s) 641, 726
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 2 cut(s) 194, 934
PspPI GGNCC 1 cut(s) 562
PsuI RGATCY 1 cut(s) 949
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 3 cut(s) 482, 516, 679
RsaNI GTAC 3 cut(s) 481, 515, 678
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 4 cut(s) 129, 453, 750, 870
SatI GCNGC 3 cut(s) 369, 795, 828
Sau3AI GATC 6 cut(s) 198, 354, 534, 799, 922, 949
Sau96I GGNCC 1 cut(s) 562
ScaI AGTACT 1 cut(s) 679
ScrFI CCNGG 1 cut(s) 608
SduI GDGCHC 2 cut(s) 46, 745
SfaNI GCATC 4 cut(s) 220, 433, 562, 898
SinI GGWCC 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 4 cut(s) 222, 431, 557, 752
SsiI CCGC 2 cut(s) 79, 656
SspI AATATT 1 cut(s) 399
SspMI CTAG 4 cut(s) 68, 281, 299, 542
StyD4I CCNGG 1 cut(s) 606
TaaI ACNGT 3 cut(s) 151, 496, 550
TaiI ACGT 3 cut(s) 100, 450, 783
TaqI TCGA 1 cut(s) 201
TasI AATT 4 cut(s) 222, 431, 557, 752
TatI WGTACW 1 cut(s) 677
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 4 cut(s) 129, 453, 750, 870
Tru9I TTAA 4 cut(s) 129, 453, 750, 870
TscAI CASTG 1 cut(s) 750
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 368, 794, 827
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 490
TspRI CASTG 1 cut(s) 750
VpaK11BI GGWCC 1 cut(s) 562
VspI ATTAAT 1 cut(s) 870
XapI RAATTY 3 cut(s) 222, 431, 752
XbaI TCTAGA 1 cut(s) 67
XceI RCATGY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 2 cut(s) 604, 784
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 4 cut(s) 68, 281, 299, 542
ZraI GACGTC 1 cut(s) 448
ZrmI AGTACT 1 cut(s) 679
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.