Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

24460719 .. 24462595

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGCGAGAAGAAGAACGAAGGAGATAACAAGAAGAAAGGAGGAGATAACAAGAAGAAGAACGAAACGCCTTCCATCACCGTCGTTTTGAAGGTCGACATGCATTGTGAAGGTTGTGCTTCTCGAATCGTCAAATGTGTTCGATCTTTCCAAGGTGTTGAGACTGTGAAATCGGAGTCGGCTACAGGGAAACTTACGGTGACCGGAGCATTAGATCCGGTGAAGTTAAGGGAGAAACTTGAAGAGAAGACAAAGAAGAAAGTCGATTTGGTTTCTCCTCAACCAAAAAAGGAAAAAGAGAAAGAGAACAAAAACAAAAACGATGAAGACAAAAAAAAATCAGAGGAGAAGAAGAAACCAGACAACAATGACAAAAAACCCAAAGAGACTCCGGTAACAACGGCGGTGTTGAAGCTGAACTTCCATTGTCAAGGTTGTATCGGGAAAATCCAAAAGACTGTCACAAAAACCAAAGGTGTTAATGGTTTAACAATGGACAAAGAGAAGAATTTGCTGACGGTTAAAGGAACAATGGATGTTAAAAAGCTCGTTGAGATTTTGAGTGAGAAGCTCAAACGTGCGGTGGAGATTGTGCCGCCGAAGAAAGAGAAAGATAAAGAGAATGGTAACGAAAATGGCGAGAAGAAGAAAGGTGGCGGCGGAGACGGTGGTGGGAAAGAGAAAACCGGTAACAAAGGCGGTGGTGAGGGAGTGAATATGATGGAGTACATGGCGGCTCAGCCAGCTTACGGTTATGGGTATTACCCGGGTGGGCCTTATGGATATCCGATTCAGGCCCACGCGCCGCAGATTTTTAGCGATGAGAATCCGAATGCTTGTGTTGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

283

Amino Acids

30.98

Weight (kDa)

9.37

Isoelectric Point (pI)

26.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	30 - 83	2.2e-11	Heavy-metal-associated domain
HMA	PF00403	140 - 189	9.6e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	803
AciI	CCGC	8 cut(s)	404, 581, 596, 657, 660, 699, 734, 806
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	508
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	749
AgeI	ACCGGT	1 cut(s)	686
AgsI	TTSAA	3 cut(s)	91, 242, 412
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	4 cut(s)	415, 547, 571, 746
AluI	AGCT	4 cut(s)	415, 547, 571, 746
Alw26I	GTCTC	3 cut(s)	155, 380, 657
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	766
AoxI	GGCC	2 cut(s)	773, 795
ApoI	RAATTY	1 cut(s)	508
AsiGI	ACCGGT	1 cut(s)	686
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	2 cut(s)	773, 796
AsuC2I	CCSGG	2 cut(s)	767, 768
AsuHPI	GGTGA	4 cut(s)	70, 211, 232, 716
AvaI	CYCGRG	1 cut(s)	766
BbsI	GAAGAC	2 cut(s)	254, 333
BccI	CCATC	2 cut(s)	83, 715
BceAI	ACGGC	1 cut(s)	417
BcnI	CCSGG	2 cut(s)	767, 768
BcoDI	GTCTC	3 cut(s)	155, 380, 657
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	4 cut(s)	596, 658, 735, 806
BlpI	GCTNAGC	1 cut(s)	738
BlsI	GCNGC	4 cut(s)	597, 659, 736, 807
Bme1390I	CCNGG	2 cut(s)	767, 768
BmeT110I	CYCGRG	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	773, 796
BmrFI	CCNGG	2 cut(s)	767, 768
BpiI	GAAGAC	2 cut(s)	254, 333
Bpu1102I	GCTNAGC	1 cut(s)	738
BpuMI	CCSGG	2 cut(s)	767, 768
BsaBI	GATNNNNATC	1 cut(s)	825
BsaJI	CCNNGG	2 cut(s)	151, 766
BsaWI	WCCGGW	4 cut(s)	203, 217, 391, 686
Bsc4I	CCNNNNNNNGG	1 cut(s)	749
Bse118I	RCCGGY	1 cut(s)	686
Bse8I	GATNNNNATC	1 cut(s)	825
BseDI	CCNNGG	2 cut(s)	151, 766
BseGI	GGATG	1 cut(s)	541
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	1 cut(s)	749
BseMII	CTCAG	1 cut(s)	752
BseRI	GAGGAG	3 cut(s)	57, 267, 359
Bsh1236I	CGCG	1 cut(s)	803
BshFI	GGCC	2 cut(s)	775, 797
BshTI	ACCGGT	1 cut(s)	686
BsiHKCI	CYCGRG	1 cut(s)	766
BsiSI	CCGG	5 cut(s)	204, 218, 392, 687, 767
BslI	CCNNNNNNNGG	1 cut(s)	749
BsmAI	GTCTC	3 cut(s)	155, 380, 657
BsmBI	CGTCTC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	2 cut(s)	775, 797
BsoBI	CYCGRG	1 cut(s)	766
Bsp143I	GATC	2 cut(s)	143, 214
Bsp1720I	GCTNAGC	1 cut(s)	738
BspACI	CCGC	8 cut(s)	404, 581, 596, 657, 660, 699, 734, 806
BspANI	GGCC	2 cut(s)	775, 797
BspCNI	CTCAG	1 cut(s)	751
BspFNI	CGCG	1 cut(s)	803
BspPI	GGATC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	686
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	2 cut(s)	151, 766
BssMI	GATC	2 cut(s)	143, 214
BssT1I	CCWWGG	1 cut(s)	151
Bst4CI	ACNGT	7 cut(s)	82, 166, 199, 460, 520, 668, 752
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	744
BstDEI	CTNAG	1 cut(s)	738
BstEII	GGTNACC	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	2 cut(s)	146, 217
BstMAI	GTCTC	3 cut(s)	155, 380, 657
BstMBI	GATC	2 cut(s)	143, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNSI	RCATGY	1 cut(s)	103
BstPI	GGTNACC	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	765, 766
BstSFI	CTRYAG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	803
BstV2I	GAAGAC	2 cut(s)	254, 333
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	775, 797
BtgZI	GCGATG	1 cut(s)	834
BtsCI	GGATG	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	744
CfoI	GCGC	1 cut(s)	805
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	2 cut(s)	773, 796
Cfr9I	CCCGGG	1 cut(s)	766
Csp6I	GTAC	1 cut(s)	727
CspAI	ACCGGT	1 cut(s)	686
CspCI	CAANNNNNGTGG	2 cut(s)	682, 717
CviAII	CATG	2 cut(s)	100, 730
CviJI	RGCY	9 cut(s)	182, 415, 547, 571, 737, 742, 746, 775, 797
CviKI_1	RGCY	9 cut(s)	182, 415, 547, 571, 737, 742, 746, 775, 797
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	2 cut(s)	145, 216
DpnII	GATC	2 cut(s)	143, 214
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	785
Eco88I	CYCGRG	1 cut(s)	766
Eco91I	GGTNACC	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	657
FaeI	CATG	2 cut(s)	103, 733
FaiI	YATR	6 cut(s)	101, 719, 731, 756, 780, 848
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FatI	CATG	2 cut(s)	99, 729
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	4 cut(s)	596, 658, 735, 806
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	4 cut(s)	596, 658, 735, 806
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	4 cut(s)	596, 658, 735, 806
HaeIII	GGCC	2 cut(s)	775, 797
HapII	CCGG	5 cut(s)	204, 218, 392, 687, 767
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	2 cut(s)	103, 733
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	5 cut(s)	126, 176, 388, 790, 826
HpaII	CCGG	5 cut(s)	204, 218, 392, 687, 767
HphI	GGTGA	4 cut(s)	70, 211, 232, 716
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	175, 343, 789, 831
Hpy188III	TCNNGA	2 cut(s)	123, 442
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	4 cut(s)	14, 81, 85, 104
HpyCH4III	ACNGT	7 cut(s)	82, 166, 199, 460, 520, 668, 752
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	2 cut(s)	103, 733
HspAI	GCGC	1 cut(s)	803
Kzo9I	GATC	2 cut(s)	143, 214
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	9 cut(s)	171, 217, 231, 372, 405, 700, 756, 779, 780
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	5 cut(s)	199, 394, 460, 626, 689
MalI	GATC	2 cut(s)	145, 216
MboI	GATC	2 cut(s)	143, 214
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	1 cut(s)	508
MlyI	GAGTC	2 cut(s)	185, 382
MnlI	CCTC	4 cut(s)	35, 288, 337, 700
Mph1103I	ATGCAT	1 cut(s)	105
MseI	TTAA	5 cut(s)	227, 480, 488, 522, 540
MspI	CCGG	5 cut(s)	204, 218, 392, 687, 767
MspR9I	CCNGG	2 cut(s)	767, 768
Mva1269I	GAATGC	1 cut(s)	838
MvnI	CGCG	1 cut(s)	803
MwoI	GCNNNNNNNGC	1 cut(s)	743
NciI	CCSGG	2 cut(s)	767, 768
NdeII	GATC	2 cut(s)	143, 214
NlaIII	CATG	2 cut(s)	103, 733
NmuCI	GTSAC	2 cut(s)	199, 460
NsiI	ATGCAT	1 cut(s)	105
NspI	RCATGY	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PctI	GAATGC	1 cut(s)	838
PfeI	GAWTC	3 cut(s)	126, 790, 826
PinAI	ACCGGT	1 cut(s)	686
PkrI	GCNGC	4 cut(s)	597, 659, 736, 807
PleI	GAGTC	2 cut(s)	184, 382
PpsI	GAGTC	2 cut(s)	184, 382
PspEI	GGTNACC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	773, 796
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	5 cut(s)	227, 480, 488, 522, 540
SatI	GCNGC	4 cut(s)	596, 658, 735, 806
Sau3AI	GATC	2 cut(s)	143, 214
Sau96I	GGNCC	2 cut(s)	773, 796
SchI	GAGTC	2 cut(s)	185, 382
ScrFI	CCNGG	2 cut(s)	767, 768
SfcI	CTRYAG	1 cut(s)	183
SmaI	CCCGGG	1 cut(s)	768
Sse9I	AATT	1 cut(s)	508
SsiI	CCGC	8 cut(s)	404, 581, 596, 657, 660, 699, 734, 806
StyD4I	CCNGG	2 cut(s)	765, 766
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	7 cut(s)	82, 166, 199, 460, 520, 668, 752
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	96, 124, 142, 264
TasI	AATT	1 cut(s)	508
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	4 cut(s)	598, 660, 737, 808
TfiI	GAWTC	3 cut(s)	126, 790, 826
Tru1I	TTAA	5 cut(s)	227, 480, 488, 522, 540
Tru9I	TTAA	5 cut(s)	227, 480, 488, 522, 540
TseFI	GTSAC	2 cut(s)	199, 460
Tsp45I	GTSAC	2 cut(s)	199, 460
TspDTI	ATGAA	1 cut(s)	339
TspMI	CCCGGG	1 cut(s)	766
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	1 cut(s)	103
XmaI	CCCGGG	1 cut(s)	766
XmiI	GTMKAC	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.