Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Forward (+)

57565754 .. 57590645

Gene Structure 24892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG428400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCAGGAAAACTTTTAAACAAAGGAAAGTTGACTCGAGATGAGCGCACTGTTTGTGGGCTGGGGGATAAGGCTTATGATGGTGGGCTACTAAGTGATGTGAGCTCCAAAAGGGCTAAGGGGGTCGACACAGTGAAGCCAGAGGTCGGAGCCCACAAGCTGACGGTGGTCGGAAAAGTGGACCCTTCAAAGCTCCGGGAACAGCTCGCCGGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGCCCAAGAAAGAGAAAGACGACAACAGCAACAAGAAGCAGCCTGAGAAAGCAGCAAGCGACGACAAAAAACCCAAAGAGCCTCCACTGACGACTGCGGTTCTCAAGCTTAATCTGCACTGCGAGGGTTGCATTCAGAAGATTCGCAAGACCGTCACCAAGACCAGAGGGTTCCATGACATGAGCATTGACAAGGAGAAGGAGCTGGTGACTTTGAAAGGGACAATGGACATGAAGGCGGTGGCTGAGAGTCTCAAAGCGAGGCTGAAGAGGAATGTGGAGATTGTGCCACCCAAGAAGGACAACAAGAAAGAAAAGGAGAAAGGTGAAGGCGGCAGCGGCGACAATGGCGGAGGTGGCAAGAAGAAGAACAAGGAGGAAGGAGGAGAGGCTGGTAATGCTGGCGGCGGCGGAGGTGAAAAATTGGACAAGATGGATTTTCCAGTTGGTCAACCTGGGTTTGGCCAGGTTCCTCCATATGGGGTTGTTTATGGGTATGATTATCCACCACCACCAATGATCTACATGGGGAATCCTCATGCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

264

Amino Acids

28.4

Weight (kDa)

9.52

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	120 - 168	2.5e-07	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	9 cut(s)	245, 344, 485, 579, 585, 597, 651, 654, 657
AcoI	YGGCCR	1 cut(s)	709
AcuI	CTGAAG	2 cut(s)	239, 533
AfiI	CCNNNNNNNGG	3 cut(s)	146, 707, 725
AgsI	TTSAA	2 cut(s)	189, 463
AjnI	CCWGG	2 cut(s)	700, 711
AluBI	AGCT	7 cut(s)	105, 160, 193, 205, 217, 355, 451
AluI	AGCT	7 cut(s)	105, 160, 193, 205, 217, 355, 451
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	709
ApeKI	GCWGC	4 cut(s)	247, 286, 299, 582
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	181, 232
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	4 cut(s)	394, 466, 584, 674
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	2 cut(s)	181, 232
BalI	TGGCCA	1 cut(s)	711
BanII	GRGCYC	2 cut(s)	107, 154
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	4 cut(s)	259, 298, 311, 594
BccI	CCATC	2 cut(s)	74, 673
BciT130I	CCWGG	2 cut(s)	702, 713
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	503
BisI	GCNGC	9 cut(s)	245, 248, 287, 300, 580, 583, 586, 652, 655
BlsI	GCNGC	9 cut(s)	246, 249, 288, 301, 581, 584, 587, 653, 656
Bme1390I	CCNGG	3 cut(s)	197, 702, 713
Bme18I	GGWCC	2 cut(s)	181, 232
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	181, 232
BmiI	GGNNCC	4 cut(s)	151, 183, 419, 717
BmrFI	CCNGG	3 cut(s)	197, 702, 713
BoxI	GACNNNNGTC	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 707, 725
Bse1I	ACTGG	1 cut(s)	689
BseBI	CCWGG	2 cut(s)	702, 713
BseDI	CCNNGG	1 cut(s)	701
BseLI	CCNNNNNNNGG	3 cut(s)	146, 707, 725
BseMII	CTCAG	2 cut(s)	282, 483
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	1 cut(s)	645
BseXI	GCAGC	4 cut(s)	259, 298, 311, 594
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	711
BsiHKAI	GWGCWC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	196, 210
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	3 cut(s)	146, 707, 725
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	711
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	107, 154
Bsp143I	GATC	1 cut(s)	765
BspACI	CCGC	9 cut(s)	245, 344, 485, 579, 585, 597, 651, 654, 657
BspANI	GGCC	1 cut(s)	711
BspCNI	CTCAG	2 cut(s)	283, 484
BspLI	GGNNCC	4 cut(s)	151, 183, 419, 717
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	702, 713
Bst4CI	ACNGT	4 cut(s)	52, 133, 166, 400
Bst6I	CTCTTC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	207, 304, 649
BstDEI	CTNAG	5 cut(s)	92, 117, 291, 492, 792
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	1 cut(s)	768
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	1 cut(s)	765
BstMWI	GCNNNNNNNGC	6 cut(s)	361, 375, 585, 594, 603, 644
BstNI	CCWGG	2 cut(s)	702, 713
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	3 cut(s)	195, 700, 711
BstV1I	GCAGC	4 cut(s)	259, 298, 311, 594
BsuRI	GGCC	1 cut(s)	711
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	4 cut(s)	48, 138, 332, 364
Cac8I	GCNNGC	3 cut(s)	207, 304, 649
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	181, 232
CviAII	CATG	5 cut(s)	422, 427, 478, 772, 785
DdeI	CTNAG	5 cut(s)	92, 117, 291, 492, 792
DpnI	GATC	1 cut(s)	767
DpnII	GATC	1 cut(s)	765
DraI	TTTAAA	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
EciI	GGCGGA	2 cut(s)	612, 672
Ecl136II	GAGCTC	1 cut(s)	105
Eco24I	GRGCYC	2 cut(s)	107, 154
Eco47I	GGWCC	2 cut(s)	181, 232
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	239, 533
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	700, 711
EcoT38I	GRGCYC	2 cut(s)	107, 154
FaeI	CATG	5 cut(s)	425, 430, 481, 775, 788
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	5 cut(s)	421, 426, 477, 771, 784
FauNDI	CATATG	1 cut(s)	724
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	9 cut(s)	245, 248, 287, 300, 580, 583, 586, 652, 655
FriOI	GRGCYC	2 cut(s)	107, 154
Fsp4HI	GCNGC	9 cut(s)	245, 248, 287, 300, 580, 583, 586, 652, 655
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	9 cut(s)	245, 248, 287, 300, 580, 583, 586, 652, 655
GsaI	CCCAGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	711
HapII	CCGG	2 cut(s)	196, 210
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	5 cut(s)	425, 430, 481, 775, 788
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	3 cut(s)	33, 127, 698
HindII	GTYRAC	3 cut(s)	33, 127, 698
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	34, 388, 496, 778
HpaII	CCGG	2 cut(s)	196, 210
HphI	GGTGA	4 cut(s)	394, 466, 584, 674
Hpy166II	GTNNAC	5 cut(s)	33, 127, 181, 232, 698
Hpy188I	TCNGA	3 cut(s)	149, 173, 384
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	5 cut(s)	33, 127, 181, 232, 698
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	7 cut(s)	195, 220, 439, 475, 538, 569, 620
HpyCH4III	ACNGT	4 cut(s)	52, 133, 166, 400
HpyCH4V	TGCA	3 cut(s)	364, 378, 788
HpyF10VI	GCNNNNNNNGC	6 cut(s)	361, 375, 585, 594, 603, 644
HpyF3I	CTNAG	5 cut(s)	92, 117, 291, 492, 792
Hsp92II	CATG	5 cut(s)	425, 430, 481, 775, 788
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	765
LmnI	GCTCC	4 cut(s)	110, 149, 198, 448
Lsp1109I	GCAGC	4 cut(s)	259, 298, 311, 594
MaeIII	GTNAC	2 cut(s)	400, 454
MalI	GATC	1 cut(s)	767
MboI	GATC	1 cut(s)	765
MboII	GAAGA	6 cut(s)	232, 235, 397, 526, 622, 625
MhlI	GDGCHC	2 cut(s)	107, 154
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	1 cut(s)	668
MluNI	TGGCCA	1 cut(s)	711
MlyI	GAGTC	2 cut(s)	28, 505
MmeI	TCCRAC	2 cut(s)	127, 151
Mox20I	TGGCCA	1 cut(s)	711
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	2 cut(s)	17, 357
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	585
MspI	CCGG	2 cut(s)	196, 210
MspR9I	CCNGG	3 cut(s)	197, 702, 713
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	2 cut(s)	702, 713
MwoI	GCNNNNNNNGC	6 cut(s)	361, 375, 585, 594, 603, 644
NciI	CCSGG	1 cut(s)	197
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	1 cut(s)	765
NlaIII	CATG	5 cut(s)	425, 430, 481, 775, 788
NlaIV	GGNNCC	4 cut(s)	151, 183, 419, 717
NmuCI	GTSAC	2 cut(s)	400, 454
PaeR7I	CTCGAG	1 cut(s)	36
PctI	GAATGC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	388, 778
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	9 cut(s)	246, 249, 288, 301, 581, 584, 587, 653, 656
PleI	GAGTC	2 cut(s)	28, 504
PpsI	GAGTC	2 cut(s)	28, 504
PshAI	GACNNNNGTC	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	700, 711
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	2 cut(s)	700, 711
PspN4I	GGNNCC	4 cut(s)	151, 183, 419, 717
PspPI	GGNCC	2 cut(s)	181, 232
SacI	GAGCTC	1 cut(s)	107
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	17, 357
SatI	GCNGC	9 cut(s)	245, 248, 287, 300, 580, 583, 586, 652, 655
Sau3AI	GATC	1 cut(s)	765
Sau96I	GGNCC	2 cut(s)	181, 232
SchI	GAGTC	2 cut(s)	28, 505
ScrFI	CCNGG	3 cut(s)	197, 702, 713
SduI	GDGCHC	2 cut(s)	107, 154
Sfr274I	CTCGAG	1 cut(s)	36
SinI	GGWCC	2 cut(s)	181, 232
SlaI	CTCGAG	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	36, 350
SmoI	CTYRAG	2 cut(s)	36, 350
Sse9I	AATT	1 cut(s)	668
SsiI	CCGC	9 cut(s)	245, 344, 485, 579, 585, 597, 651, 654, 657
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	195, 700, 711
TaaI	ACNGT	4 cut(s)	52, 133, 166, 400
TaqI	TCGA	2 cut(s)	37, 126
TasI	AATT	1 cut(s)	668
TauI	GCSGC	5 cut(s)	247, 582, 588, 654, 657
TfiI	GAWTC	2 cut(s)	388, 778
Tru1I	TTAA	2 cut(s)	17, 357
Tru9I	TTAA	2 cut(s)	17, 357
TscAI	CASTG	4 cut(s)	55, 138, 339, 371
TseFI	GTSAC	2 cut(s)	400, 454
TseI	GCWGC	4 cut(s)	247, 286, 299, 582
Tsp45I	GTSAC	2 cut(s)	400, 454
TspDTI	ATGAA	1 cut(s)	494
TspRI	CASTG	4 cut(s)	55, 138, 339, 371
VpaK11BI	GGWCC	2 cut(s)	181, 232
XhoI	CTCGAG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.