Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002589.1

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

199736 .. 202291

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002589.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atggatggggtcatgggcactagttcaaagggcgactttaggtggcgtggcgggttttggcattgttccaggcgacagctcgatggcattgtgggttttctgtgtagcttaggatgctggggacttgttccgggtaggttctggcctcgtgctggtggtttatggcaatgtcagggtgtcgacagatctagtggtggtgccgagagcgtggtctcttgttctgtggcgccaacggcagtggcagttgcggccagctgtttaggctttagattcgattccaactttggtttcctttcctttgcaggggtcgacacagtgaagccagaggtcggagcccacaagctgacggtggtcggaaaagtggacccttcaaagctccgggaacagctcgccagaaagctgaagaagaaggtggacctcatctcaccgcagcccaagaaagagaaagacgacaacagcaacaagaagcagcctgagaaagcagcaagcgacgacaaaaaacccaaagagcctccactgacgacggcggttctcaagcttaatctgcactgcgaggggttccatgacatgagcattgacaaggagaaggagctggtgactttgaaagggacaatggacatgaaggcggtggctgagagtctcaaagcgaggctgaagaggaatgtggagattgtgccacccaagaaggacaacaagaaagaaaaggagaaaggtgaaggcggcggcggcgacaatggcggaggtggcaagaagaagaacaaggaggaaggaggagaggctggtaatgctggcggtggcggcggaggtgaaaaattggacaagatggattttccagttggtcaacccgggtttggccaggttcctccatatggggttgtttatgggtatgattatccaccaccaccaatgatctacatggggaatcctcatgcaccttgtttggccaggttcctccatatggggttgtttatgggtatgattatccaccaccaccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

332

Amino Acids

35.78

Weight (kDa)

9.22

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 226
AccI	GTMKAC	2 cut(s)	180, 309
AcoI	YGGCCR	3 cut(s)	249, 853, 942
AcuI	CTGAAG	2 cut(s)	422, 674
AcyI	GRCGYC	1 cut(s)	227
AfiI	CCNNNNNNNGG	6 cut(s)	152, 303, 329, 851, 869, 958
AgsI	TTSAA	3 cut(s)	27, 372, 604
AhlI	ACTAGT	1 cut(s)	20
AjnI	CCWGG	3 cut(s)	68, 855, 944
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	9 cut(s)	79, 108, 255, 343, 376, 388, 400, 538, 592
AluI	AGCT	9 cut(s)	79, 108, 255, 343, 376, 388, 400, 538, 592
Alw26I	GTCTC	2 cut(s)	217, 644
Ama87I	CYCGRG	1 cut(s)	845
AoxI	GGCC	4 cut(s)	143, 249, 853, 942
ApeKI	GCWGC	3 cut(s)	430, 469, 482
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	364, 415
AsuC2I	CCSGG	4 cut(s)	132, 380, 846, 847
AsuHPI	GGTGA	4 cut(s)	417, 607, 725, 818
AvaI	CYCGRG	1 cut(s)	845
AvaII	GGWCC	2 cut(s)	364, 415
BaeGI	GKGCMC	1 cut(s)	20
BalI	TGGCCA	2 cut(s)	855, 944
BanI	GGYRCC	2 cut(s)	197, 226
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	442, 481, 494
BccI	CCATC	2 cut(s)	77, 817
BceAI	ACGGC	2 cut(s)	249, 540
BciT130I	CCWGG	3 cut(s)	70, 857, 946
BcnI	CCSGG	4 cut(s)	132, 380, 846, 847
BcoDI	GTCTC	2 cut(s)	217, 644
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	2 cut(s)	21, 189
BfoI	RGCGCY	1 cut(s)	230
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	8 cut(s)	249, 431, 470, 483, 721, 724, 727, 799
BlsI	GCNGC	8 cut(s)	250, 432, 471, 484, 722, 725, 728, 800
Bme1390I	CCNGG	7 cut(s)	70, 132, 380, 846, 847, 857, 946
Bme18I	GGWCC	2 cut(s)	364, 415
BmeT110I	CYCGRG	1 cut(s)	845
BmgT120I	GGNCC	2 cut(s)	364, 415
BmiI	GGNNCC	7 cut(s)	199, 228, 334, 366, 560, 861, 950
BmrFI	CCNGG	7 cut(s)	70, 132, 380, 846, 847, 857, 946
BmsI	GCATC	1 cut(s)	104
BoxI	GACNNNNGTC	1 cut(s)	350
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	4 cut(s)	132, 380, 846, 847
BsaHI	GRCGYC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	845
Bsc4I	CCNNNNNNNGG	6 cut(s)	152, 303, 329, 851, 869, 958
Bse1I	ACTGG	1 cut(s)	833
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	3 cut(s)	70, 857, 946
BseDI	CCNNGG	1 cut(s)	845
BseGI	GGATG	2 cut(s)	10, 119
BseLI	CCNNNNNNNGG	6 cut(s)	152, 303, 329, 851, 869, 958
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	465, 624
BseNI	ACTGG	1 cut(s)	833
BseRI	GAGGAG	1 cut(s)	786
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	442, 481, 494
BseYI	CCCAGC	1 cut(s)	117
BsgI	GTGCAG	1 cut(s)	530
BshFI	GGCC	4 cut(s)	145, 251, 855, 944
BshNI	GGYRCC	2 cut(s)	197, 226
BsiHKCI	CYCGRG	1 cut(s)	845
BsiSI	CCGG	3 cut(s)	131, 379, 846
BslFI	GGGAC	2 cut(s)	135, 622
BslI	CCNNNNNNNGG	6 cut(s)	152, 303, 329, 851, 869, 958
BsmAI	GTCTC	2 cut(s)	217, 644
BsmFI	GGGAC	2 cut(s)	135, 622
BsnI	GGCC	4 cut(s)	145, 251, 855, 944
Bso31I	GGTCTC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	845
Bsp1286I	GDGCHC	2 cut(s)	20, 337
Bsp143I	GATC	2 cut(s)	185, 909
BspANI	GGCC	4 cut(s)	145, 251, 855, 944
BspCNI	CTCAG	2 cut(s)	466, 625
BspLI	GGNNCC	7 cut(s)	199, 228, 334, 366, 560, 861, 950
BspT107I	GGYRCC	2 cut(s)	197, 226
BspTNI	GGTCTC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	833
BssECI	CCNNGG	1 cut(s)	845
BssMI	GATC	2 cut(s)	185, 909
BssNI	GRCGYC	1 cut(s)	227
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	70, 857, 946
Bst4CI	ACNGT	2 cut(s)	316, 349
Bst6I	CTCTTC	1 cut(s)	650
BstACI	GRCGYC	1 cut(s)	227
BstC8I	GCNNGC	4 cut(s)	253, 390, 487, 790
BstDEI	CTNAG	3 cut(s)	109, 474, 633
BstF5I	GGATG	2 cut(s)	10, 119
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	188, 912
BstMAI	GTCTC	2 cut(s)	217, 644
BstMBI	GATC	2 cut(s)	185, 909
BstNI	CCWGG	3 cut(s)	70, 857, 946
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	7 cut(s)	68, 130, 378, 844, 845, 855, 944
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	442, 481, 494
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	4 cut(s)	145, 251, 855, 944
BtsCI	GGATG	2 cut(s)	10, 119
BtsI	GCAGTG	2 cut(s)	243, 547
BtsIMutI	CAGTG	4 cut(s)	243, 321, 515, 547
Cac8I	GCNNGC	4 cut(s)	253, 390, 487, 790
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	364, 415
Cfr9I	CCCGGG	1 cut(s)	845
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	6 cut(s)	13, 563, 568, 619, 916, 929
DdeI	CTNAG	3 cut(s)	109, 474, 633
DinI	GGCGCC	1 cut(s)	228
DpnI	GATC	2 cut(s)	187, 911
DpnII	GATC	2 cut(s)	185, 909
EaeI	YGGCCR	3 cut(s)	249, 853, 942
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
EciI	GGCGGA	2 cut(s)	753, 816
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	364, 415
Eco57I	CTGAAG	2 cut(s)	422, 674
Eco88I	CYCGRG	1 cut(s)	845
EcoRII	CCWGG	3 cut(s)	68, 855, 944
EcoT38I	GRGCYC	1 cut(s)	337
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
FaeI	CATG	6 cut(s)	16, 566, 571, 622, 919, 932
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	2 cut(s)	135, 622
FatI	CATG	6 cut(s)	12, 562, 567, 618, 915, 928
FauI	CCCGC	1 cut(s)	44
FauNDI	CATATG	2 cut(s)	868, 957
FblI	GTMKAC	2 cut(s)	180, 309
Fnu4HI	GCNGC	8 cut(s)	249, 431, 470, 483, 721, 724, 727, 799
FokI	GGATG	2 cut(s)	17, 126
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	8 cut(s)	249, 431, 470, 483, 721, 724, 727, 799
FspBI	CTAG	2 cut(s)	21, 189
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	8 cut(s)	249, 431, 470, 483, 721, 724, 727, 799
GsaI	CCCAGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	4 cut(s)	145, 251, 855, 944
HapII	CCGG	3 cut(s)	131, 379, 846
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	6 cut(s)	16, 566, 571, 622, 919, 932
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	3 cut(s)	181, 310, 842
HindII	GTYRAC	3 cut(s)	181, 310, 842
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	4 cut(s)	270, 275, 637, 922
HpaII	CCGG	3 cut(s)	131, 379, 846
HphI	GGTGA	4 cut(s)	417, 607, 725, 818
Hpy166II	GTNNAC	5 cut(s)	181, 310, 364, 415, 842
Hpy188I	TCNGA	2 cut(s)	332, 356
Hpy8I	GTNNAC	5 cut(s)	181, 310, 364, 415, 842
Hpy99I	CGWCG	2 cut(s)	494, 526
HpyAV	CCTTC	7 cut(s)	378, 403, 580, 616, 679, 710, 761
HpyCH4III	ACNGT	2 cut(s)	316, 349
HpyCH4V	TGCA	3 cut(s)	302, 547, 932
HpyF3I	CTNAG	3 cut(s)	109, 474, 633
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	6 cut(s)	16, 566, 571, 622, 919, 932
HspAI	GCGC	1 cut(s)	227
KasI	GGCGCC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	185, 909
LmnI	GCTCC	3 cut(s)	332, 381, 589
Lsp1109I	GCAGC	3 cut(s)	442, 481, 494
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	2 cut(s)	21, 189
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	187, 911
MboI	GATC	2 cut(s)	185, 909
MboII	GAAGA	5 cut(s)	415, 418, 667, 763, 766
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	2 cut(s)	20, 337
MlsI	TGGCCA	2 cut(s)	855, 944
MluCI	AATT	1 cut(s)	812
MluNI	TGGCCA	2 cut(s)	855, 944
Mly113I	GGCGCC	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	3 cut(s)	303, 310, 334
Mox20I	TGGCCA	2 cut(s)	855, 944
MscI	TGGCCA	2 cut(s)	855, 944
MseI	TTAA	1 cut(s)	540
Msp20I	TGGCCA	2 cut(s)	855, 944
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	3 cut(s)	131, 379, 846
MspR9I	CCNGG	7 cut(s)	70, 132, 380, 846, 847, 857, 946
MvaI	CCWGG	3 cut(s)	70, 857, 946
NarI	GGCGCC	1 cut(s)	227
NciI	CCSGG	4 cut(s)	132, 380, 846, 847
NdeI	CATATG	2 cut(s)	868, 957
NdeII	GATC	2 cut(s)	185, 909
NlaIII	CATG	6 cut(s)	16, 566, 571, 622, 919, 932
NlaIV	GGNNCC	7 cut(s)	199, 228, 334, 366, 560, 861, 950
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	595
PfeI	GAWTC	3 cut(s)	270, 275, 922
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	8 cut(s)	250, 432, 471, 484, 722, 725, 728, 800
PleI	GAGTC	1 cut(s)	645
PluTI	GGCGCC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	645
PshAI	GACNNNNGTC	1 cut(s)	350
Psp6I	CCWGG	3 cut(s)	68, 855, 944
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	3 cut(s)	68, 855, 944
PspN4I	GGNNCC	7 cut(s)	199, 228, 334, 366, 560, 861, 950
PspPI	GGNCC	2 cut(s)	364, 415
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	255
SalI	GTCGAC	2 cut(s)	179, 308
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	8 cut(s)	249, 431, 470, 483, 721, 724, 727, 799
Sau3AI	GATC	2 cut(s)	185, 909
Sau96I	GGNCC	2 cut(s)	364, 415
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	7 cut(s)	70, 132, 380, 846, 847, 857, 946
SduI	GDGCHC	2 cut(s)	20, 337
SfaNI	GCATC	1 cut(s)	104
SfoI	GGCGCC	1 cut(s)	228
SinI	GGWCC	2 cut(s)	364, 415
SmaI	CCCGGG	1 cut(s)	847
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	1 cut(s)	812
SspDI	GGCGCC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	21, 189
StyD4I	CCNGG	7 cut(s)	68, 130, 378, 844, 845, 855, 944
TaaI	ACNGT	2 cut(s)	316, 349
TaqI	TCGA	4 cut(s)	81, 180, 273, 309
TasI	AATT	1 cut(s)	812
TauI	GCSGC	5 cut(s)	251, 723, 726, 729, 801
TfiI	GAWTC	3 cut(s)	270, 275, 922
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	4 cut(s)	243, 321, 522, 554
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	3 cut(s)	430, 469, 482
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	1 cut(s)	635
TspMI	CCCGGG	1 cut(s)	845
TspRI	CASTG	4 cut(s)	243, 321, 522, 554
VpaK11BI	GGWCC	2 cut(s)	364, 415
XmaI	CCCGGG	1 cut(s)	845
XmiI	GTMKAC	2 cut(s)	180, 309
XspI	CTAG	2 cut(s)	21, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.