Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Forward (+)

56551479 .. 56559187

Gene Structure 7709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGACGACATGAAAGACAAGGTCAAGGGCTTCATCAAGAACCCATTCTCGTCTTCTTCCTCTGGGGTCGACACAGTGAAGCAAGAGGCCGGAGCCCACAAGCTGACGGTGGTCGGGAAAGTGGACCCTTCAAAGCTCCAGGAACAACTCGCCGGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGTCCAAGAAAGAGAAATACGACAACAGCAACAAGAAGCAACCTGAAAAAGCAGCAAACGACGACAAAAAACCCAAAGAGGTTAGATCTGAGGGTGTACATGTGCGGTGCGATAAGCTTCCGTCGCCGAGGCTCCTGTCACCCAAGCTTCCGTCACCGGTGATTCAGTTGCTCAAGATTCCGACGCAGGTGATTCCGTCGTCGGAGATTGCAAGGACGCGTTTGCAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

140

Amino Acids

15.49

Weight (kDa)

9.83

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	409
AciI	CCGC	2 cut(s)	188, 295
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	288
AflIII	ACRYGT	2 cut(s)	289, 407
AgeI	ACCGGT	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	6 cut(s)	103, 136, 160, 307, 337, 418
AluI	AGCT	6 cut(s)	103, 136, 160, 307, 337, 418
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	242, 415
AsiGI	ACCGGT	1 cut(s)	346
Asp700I	GAANNNNTTC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	124, 175
AsuHPI	GGTGA	4 cut(s)	321, 336, 361, 391
AvaII	GGWCC	2 cut(s)	124, 175
BanII	GRGCYC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	367
BglII	AGATCT	1 cut(s)	275
BisI	GCNGC	3 cut(s)	188, 243, 416
BlsI	GCNGC	3 cut(s)	189, 244, 417
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	124, 175
BmgT120I	GGNCC	2 cut(s)	124, 175
BmiI	GGNNCC	3 cut(s)	94, 126, 323
BmrFI	CCNGG	1 cut(s)	140
BoxI	GACNNNNGTC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	346
Bse118I	RCCGGY	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	89
BshTI	ACCGGT	1 cut(s)	346
BsiSI	CCGG	3 cut(s)	90, 153, 347
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	275
BspACI	CCGC	2 cut(s)	188, 295
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	94, 126, 323
BspMI	ACCTGC	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	346
BsrGI	TGTACA	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	76, 109
BstAUI	TGTACA	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	409
BstKTI	GATC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 415
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	293
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	124, 175
CseI	GACGC	2 cut(s)	382, 415
Csp6I	GTAC	1 cut(s)	287
CspAI	ACCGGT	1 cut(s)	346
CviAII	CATG	2 cut(s)	10, 290
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	124, 175
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	2 cut(s)	13, 293
FaiI	YATR	2 cut(s)	11, 291
FatI	CATG	2 cut(s)	9, 289
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	188, 243, 416
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	3 cut(s)	188, 243, 416
GluI	GCNGC	3 cut(s)	188, 243, 416
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	3 cut(s)	90, 153, 347
HgaI	GACGC	2 cut(s)	382, 415
Hin1II	CATG	2 cut(s)	13, 293
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	2 cut(s)	305, 335
HinfI	GANTC	3 cut(s)	352, 367, 382
HpaII	CCGG	3 cut(s)	90, 153, 347
HphI	GGTGA	4 cut(s)	321, 336, 361, 391
Hpy166II	GTNNAC	4 cut(s)	70, 124, 175, 287
Hpy188I	TCNGA	4 cut(s)	280, 372, 394, 422
Hpy188III	TCNNGA	3 cut(s)	37, 115, 364
Hpy8I	GTNNAC	4 cut(s)	70, 124, 175, 287
Hpy99I	CGWCG	5 cut(s)	254, 316, 376, 391, 394
HpyAV	CCTTC	2 cut(s)	138, 163
HpyCH4III	ACNGT	2 cut(s)	76, 109
HpyCH4V	TGCA	2 cut(s)	401, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 415
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	13, 293
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	3 cut(s)	92, 141, 327
LpnPI	CCDG	9 cut(s)	48, 103, 125, 152, 166, 246, 338, 360, 362
Lsp1109I	GCAGC	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	327, 342
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	4 cut(s)	45, 48, 175, 178
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	97
MluI	ACGCGT	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	372, 395
MnlI	CCTC	6 cut(s)	70, 79, 188, 262, 274, 312
MroXI	GAANNNNTTC	1 cut(s)	44
MspI	CCGG	3 cut(s)	90, 153, 347
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	313, 415
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	2 cut(s)	13, 293
NlaIV	GGNNCC	3 cut(s)	94, 126, 323
NmeAIII	GCCGAG	1 cut(s)	342
NmuCI	GTSAC	2 cut(s)	327, 342
NspI	RCATGY	1 cut(s)	293
PaqCI	CACCTGC	1 cut(s)	367
PciI	ACATGT	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	352, 367, 382
PflFI	GACNNNGTC	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	138
PinAI	ACCGGT	1 cut(s)	346
PkrI	GCNGC	3 cut(s)	189, 244, 417
PscI	ACATGT	1 cut(s)	289
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	94, 126, 323
PspPI	GGNCC	2 cut(s)	124, 175
PsuI	RGATCY	1 cut(s)	275
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SalI	GTCGAC	1 cut(s)	68
SatI	GCNGC	3 cut(s)	188, 243, 416
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	2 cut(s)	124, 175
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	97
SgrAI	CRCCGGYG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	124, 175
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SsiI	CCGC	2 cut(s)	188, 295
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	76, 109
TaqI	TCGA	1 cut(s)	69
TatI	WGTACW	1 cut(s)	286
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	3 cut(s)	352, 367, 382
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	2 cut(s)	327, 342
TseI	GCWGC	2 cut(s)	242, 415
Tsp45I	GTSAC	2 cut(s)	327, 342
TspDTI	ATGAA	2 cut(s)	22, 26
TspGWI	ACGGA	3 cut(s)	300, 330, 375
TspRI	CASTG	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	124, 175
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.