Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

35491041 .. 35493014

Gene Structure 1974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG281200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAATAGGTAGTCTGGAGACTGCTTGGATTACAGGGATTAAGAGGACTGCGTCAATGGAATTGGTGCCTTACTGTAAGAAGACCAAGTGTATTGATGATGCTGTGATCGTTCCAGTGGAGCTGGATTTTGAACCGGTTTTGTCTCTCCCGATAGAGAATGATGGGGTCGACACAGTGAAGCCAGAGGCCGGAGCCCACAAGCTGACGGTGGTCGGGAAAGTGGACCCTTCAAAGCTCGGGGAACAACTCGCCGGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGTCCAAGAAAGAGAAAGACGACAACAACAACAAGAAGCAGCTTGAGAAAGCAGCAAACGACGACAAAAAACCCAAAGAGGTTAGATCTGAGGGTGTACATGTGCGGTGCGACAAGCTTCCGTCGCCGAGGCTCCCGTCACCCAAGCTTCCGTCACCGAGGCTACCGTCGCCCAAGCTTCTGTCACAGGTGATTCAGCTTCCCAAGATTCCGGCGCAGGTGATCCCGTCGTCGGAGATTGCAAGGACGCGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

182

Amino Acids

19.98

Weight (kDa)

9.27

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	499
AccB1I	GGYRCC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	541
AciI	CCGC	2 cut(s)	290, 397
AclWI	GGATC	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	2 cut(s)	191, 523
AflIII	ACRYGT	2 cut(s)	391, 539
AgeI	ACCGGT	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	134, 234
AluBI	AGCT	9 cut(s)	124, 205, 238, 262, 334, 409, 439, 469, 490
AluI	AGCT	9 cut(s)	124, 205, 238, 262, 334, 409, 439, 469, 490
Alw26I	GTCTC	2 cut(s)	14, 150
AlwI	GGATC	1 cut(s)	508
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	331, 344
AsiGI	ACCGGT	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	226, 277
AsuHPI	GGTGA	4 cut(s)	423, 438, 493, 523
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	226, 277
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	343, 356
BccI	CCATC	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	14, 150
BfuAI	ACCTGC	1 cut(s)	499
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	3 cut(s)	290, 332, 345
BlsI	GCNGC	3 cut(s)	291, 333, 346
Bme18I	GGWCC	2 cut(s)	226, 277
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	226, 277
BmiI	GGNNCC	4 cut(s)	69, 196, 228, 425
BmsI	GCATC	1 cut(s)	91
BoxI	GACNNNNGTC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	419, 449
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 523
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	419, 449
BseLI	CCNNNNNNNGG	2 cut(s)	191, 523
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	343, 356
Bsh1236I	CGCG	1 cut(s)	541
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	67
BshTI	ACCGGT	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	4 cut(s)	137, 192, 255, 503
BslI	CCNNNNNNNGG	2 cut(s)	191, 523
BsmAI	GTCTC	2 cut(s)	14, 150
BsnI	GGCC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	108, 377, 513
BspACI	CCGC	2 cut(s)	290, 397
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	541
BspLI	GGNNCC	4 cut(s)	69, 196, 228, 425
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	419, 449
BssMI	GATC	3 cut(s)	108, 377, 513
Bst4CI	ACNGT	4 cut(s)	77, 178, 211, 459
BstAUI	TGTACA	1 cut(s)	388
BstDEI	CTNAG	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	3 cut(s)	111, 380, 516
BstMAI	GTCTC	2 cut(s)	14, 150
BstMBI	GATC	3 cut(s)	108, 377, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	415, 460
BstNSI	RCATGY	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	541
BstV1I	GCAGC	2 cut(s)	343, 356
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	123, 183
BveI	ACCTGC	1 cut(s)	499
CfoI	GCGC	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	226, 277
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	389
CspAI	ACCGGT	1 cut(s)	136
CviAII	CATG	1 cut(s)	392
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	3 cut(s)	110, 379, 515
DpnII	GATC	3 cut(s)	108, 377, 513
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	226, 277
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	1 cut(s)	395
FaiI	YATR	1 cut(s)	393
FatI	CATG	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	290, 332, 345
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	290, 332, 345
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	3 cut(s)	290, 332, 345
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	4 cut(s)	137, 192, 255, 503
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	3 cut(s)	407, 437, 467
HinfI	GANTC	2 cut(s)	484, 499
HpaII	CCGG	4 cut(s)	137, 192, 255, 503
HphI	GGTGA	4 cut(s)	423, 438, 493, 523
Hpy166II	GTNNAC	4 cut(s)	172, 226, 277, 389
Hpy188I	TCNGA	2 cut(s)	382, 526
Hpy188III	TCNNGA	3 cut(s)	17, 151, 217
Hpy8I	GTNNAC	4 cut(s)	172, 226, 277, 389
Hpy99I	CGWCG	5 cut(s)	356, 418, 463, 523, 526
HpyAV	CCTTC	2 cut(s)	240, 265
HpyCH4III	ACNGT	4 cut(s)	77, 178, 211, 459
HpyCH4V	TGCA	1 cut(s)	533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	415, 460
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	1 cut(s)	506
Kzo9I	GATC	3 cut(s)	108, 377, 513
LmnI	GCTCC	3 cut(s)	121, 194, 429
Lsp1109I	GCAGC	2 cut(s)	343, 356
LweI	GCATC	1 cut(s)	91
MaeIII	GTNAC	3 cut(s)	429, 444, 474
MalI	GATC	3 cut(s)	110, 379, 515
MboI	GATC	3 cut(s)	108, 377, 513
MboII	GAAGA	3 cut(s)	94, 277, 280
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	62
MluI	ACGCGT	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	7 cut(s)	39, 181, 290, 364, 376, 414, 444
MseI	TTAA	1 cut(s)	42
MspI	CCGG	4 cut(s)	137, 192, 255, 503
MvnI	CGCG	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	415, 460
NdeII	GATC	3 cut(s)	108, 377, 513
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	4 cut(s)	69, 196, 228, 425
NmeAIII	GCCGAG	1 cut(s)	444
NmuCI	GTSAC	3 cut(s)	429, 444, 474
NspI	RCATGY	1 cut(s)	395
PaqCI	CACCTGC	1 cut(s)	499
PciI	ACATGT	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	484, 499
PflFI	GACNNNGTC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	291, 333, 346
PscI	ACATGT	1 cut(s)	391
PshAI	GACNNNNGTC	1 cut(s)	212
PspN4I	GGNNCC	4 cut(s)	69, 196, 228, 425
PspPI	GGNCC	2 cut(s)	226, 277
PsuI	RGATCY	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	290, 332, 345
Sau3AI	GATC	3 cut(s)	108, 377, 513
Sau96I	GGNCC	2 cut(s)	226, 277
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	91
SinI	GGWCC	2 cut(s)	226, 277
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	2 cut(s)	290, 397
TaaI	ACNGT	4 cut(s)	77, 178, 211, 459
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	62
TatI	WGTACW	1 cut(s)	388
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	484, 499
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	123, 183
TseFI	GTSAC	3 cut(s)	429, 444, 474
TseI	GCWGC	2 cut(s)	331, 344
Tsp45I	GTSAC	3 cut(s)	429, 444, 474
TspGWI	ACGGA	2 cut(s)	402, 432
TspRI	CASTG	2 cut(s)	123, 183
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	226, 277
XceI	RCATGY	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.