Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

22241943 .. 22244021

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG192400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTTGGTTGGTCTGGGTCGACACAGTGAAGCCAAAGGTCGGAGCCCACAAGCTGACGGTGGTCGGAAAAGTGGACCCTTCAAAGCTCCGGGAACAGCTCGCCGGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGCCCAAGAAAGAGAAAGACGACAATAGCAACAAGAAGAAGCCTGAGAAAGCAGCAAGCGACGACAAAAAACCCAAAGAGCCTCCGCTGACAACGGCGGTTCTCAAGCTCAATCTGCACTGCGAGGGTTGCATTCAGAAGATTCGCAAGACCGTCACCAAGACCAGAGGTGAGGTTATCATTTCTCTCAGCTGTGTTTTTGTGTACTTCATATGGCGGCGTTTGGGTGGTGGTGGTGGCCGGATGCTAACGTTTTGGGTTTTGTTATGGTGTGGCAGGAAGGAGAAGGAGCTGGTGACTCTGAAAGGGACAATAGACATGAAGGCGGTGGCTGAGAGTCTCAAAGCGAGGCTGAAGAGGAACGTGGAGATTGTGCCACCCAAGAAGGACAACAAGAAAGAAAAGGAGAAAGGTGAAGGCGGCGGCGGCGACAATGGAGGAGGTGGCAAGAAGAAGAACAAGGAGGAAGGAGGAGAGGCTGGTAATGCTGGCAGCGGCGGAGGTGAAAAATTGGACAAGATGGATTTTCCGGTTGGTCAACCCGGGTTTGGCCAGGTTCCTCCATATGGGGTTGTTTATGGGTATGATTATCCACCACCACCAATGACCTACATGGGGAATCCTCATGCACCTCAGATTTTTAGTGATGAGAACCCAAATGCTTGTTCAATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

272

Amino Acids

29.74

Weight (kDa)

9.58

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AclI	AACGTT	1 cut(s)	392
AcoI	YGGCCR	2 cut(s)	379, 691
AcuI	CTGAAG	2 cut(s)	134, 515
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	4 cut(s)	41, 689, 707, 756
AgsI	TTSAA	2 cut(s)	84, 810
AjnI	CCWGG	1 cut(s)	693
AjuI	GAANNNNNNNTTGG	1 cut(s)	790
AluBI	AGCT	7 cut(s)	55, 88, 100, 112, 250, 333, 433
AluI	AGCT	7 cut(s)	55, 88, 100, 112, 250, 333, 433
Alw26I	GTCTC	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	379, 691
ApeKI	GCWGC	3 cut(s)	142, 194, 633
AspS9I	GGNCC	2 cut(s)	76, 127
AsuC2I	CCSGG	3 cut(s)	92, 684, 685
AsuHPI	GGTGA	5 cut(s)	289, 323, 448, 566, 656
AvaI	CYCGRG	1 cut(s)	683
AvaII	GGWCC	2 cut(s)	76, 127
BalI	TGGCCA	1 cut(s)	693
BanII	GRGCYC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	154, 206, 645
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	695
BcnI	CCSGG	3 cut(s)	92, 684, 685
BcoDI	GTCTC	1 cut(s)	485
BisI	GCNGC	9 cut(s)	140, 143, 195, 359, 562, 565, 568, 634, 637
BlsI	GCNGC	9 cut(s)	141, 144, 196, 360, 563, 566, 569, 635, 638
Bme1390I	CCNGG	4 cut(s)	92, 684, 685, 695
Bme18I	GGWCC	2 cut(s)	76, 127
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	76, 127
BmiI	GGNNCC	3 cut(s)	46, 78, 699
BmrFI	CCNGG	4 cut(s)	92, 684, 685, 695
BmsI	GCATC	1 cut(s)	375
BoxI	GACNNNNGTC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	3 cut(s)	92, 684, 685
BsaJI	CCNNGG	1 cut(s)	683
BsaWI	WCCGGW	1 cut(s)	670
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 689, 707, 756
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	4 cut(s)	41, 689, 707, 756
BseMII	CTCAG	4 cut(s)	177, 343, 465, 788
BseRI	GAGGAG	2 cut(s)	594, 627
BseXI	GCAGC	3 cut(s)	154, 206, 645
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	381, 693
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	5 cut(s)	91, 105, 382, 671, 684
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	41, 689, 707, 756
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	381, 693
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	381, 693
BspCNI	CTCAG	4 cut(s)	178, 342, 466, 787
BspLI	GGNNCC	3 cut(s)	46, 78, 699
BssECI	CCNNGG	1 cut(s)	683
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	28, 61, 295
Bst6I	CTCTTC	1 cut(s)	491
BstC8I	GCNNGC	3 cut(s)	102, 199, 631
BstDEI	CTNAG	4 cut(s)	186, 329, 474, 774
BstF5I	GGATG	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	485
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 270, 567, 626
BstNI	CCWGG	1 cut(s)	695
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSCI	CCNGG	4 cut(s)	90, 682, 683, 693
BstV1I	GCAGC	3 cut(s)	154, 206, 645
BsuRI	GGCC	2 cut(s)	381, 693
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	33, 259
Cac8I	GCNNGC	3 cut(s)	102, 199, 631
Cfr13I	GGNCC	2 cut(s)	76, 127
Cfr9I	CCCGGG	1 cut(s)	683
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	3 cut(s)	460, 754, 767
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	4 cut(s)	186, 329, 474, 774
EaeI	YGGCCR	2 cut(s)	379, 691
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	654
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	76, 127
Eco57I	CTGAAG	2 cut(s)	134, 515
Eco88I	CYCGRG	1 cut(s)	683
EcoRII	CCWGG	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	49
FaeI	CATG	3 cut(s)	463, 757, 770
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	3 cut(s)	459, 753, 766
FauNDI	CATATG	2 cut(s)	353, 706
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	9 cut(s)	140, 143, 195, 359, 562, 565, 568, 634, 637
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	9 cut(s)	140, 143, 195, 359, 562, 565, 568, 634, 637
GluI	GCNGC	9 cut(s)	140, 143, 195, 359, 562, 565, 568, 634, 637
HaeIII	GGCC	2 cut(s)	381, 693
HapII	CCGG	5 cut(s)	91, 105, 382, 671, 684
Hin1II	CATG	3 cut(s)	463, 757, 770
HincII	GTYRAC	2 cut(s)	22, 680
HindII	GTYRAC	2 cut(s)	22, 680
HinfI	GANTC	4 cut(s)	283, 439, 478, 760
HpaII	CCGG	5 cut(s)	91, 105, 382, 671, 684
HphI	GGTGA	5 cut(s)	289, 323, 448, 566, 656
Hpy166II	GTNNAC	5 cut(s)	22, 76, 127, 346, 680
Hpy188I	TCNGA	5 cut(s)	44, 68, 279, 444, 777
Hpy8I	GTNNAC	5 cut(s)	22, 76, 127, 346, 680
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	8 cut(s)	90, 115, 415, 421, 457, 520, 551, 602
HpyCH4III	ACNGT	3 cut(s)	28, 61, 295
HpyCH4IV	ACGT	2 cut(s)	392, 504
HpyCH4V	TGCA	3 cut(s)	259, 273, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 270, 567, 626
HpyF3I	CTNAG	4 cut(s)	186, 329, 474, 774
HpySE526I	ACGT	2 cut(s)	392, 504
Hsp92II	CATG	3 cut(s)	463, 757, 770
LmnI	GCTCC	3 cut(s)	44, 93, 430
Lsp1109I	GCAGC	3 cut(s)	154, 206, 645
LweI	GCATC	1 cut(s)	375
MaeII	ACGT	2 cut(s)	392, 504
MaeIII	GTNAC	2 cut(s)	295, 436
MboII	GAAGA	7 cut(s)	127, 130, 190, 292, 508, 604, 607
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	693
MluCI	AATT	2 cut(s)	650, 810
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	2 cut(s)	433, 487
MmeI	TCCRAC	2 cut(s)	22, 46
Mox20I	TGGCCA	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	693
Msp20I	TGGCCA	1 cut(s)	693
MspA1I	CMGCKG	3 cut(s)	229, 333, 636
MspI	CCGG	5 cut(s)	91, 105, 382, 671, 684
MspR9I	CCNGG	4 cut(s)	92, 684, 685, 695
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	4 cut(s)	256, 270, 567, 626
NciI	CCSGG	3 cut(s)	92, 684, 685
NdeI	CATATG	2 cut(s)	353, 706
NlaIII	CATG	3 cut(s)	463, 757, 770
NlaIV	GGNNCC	3 cut(s)	46, 78, 699
NmuCI	GTSAC	2 cut(s)	295, 436
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	283, 760
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	9 cut(s)	141, 144, 196, 360, 563, 566, 569, 635, 638
PleI	GAGTC	2 cut(s)	433, 486
PpsI	GAGTC	2 cut(s)	433, 486
PshAI	GACNNNNGTC	1 cut(s)	62
Psp1406I	AACGTT	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	3 cut(s)	46, 78, 699
PspPI	GGNCC	2 cut(s)	76, 127
PvuII	CAGCTG	1 cut(s)	333
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	20
SatI	GCNGC	9 cut(s)	140, 143, 195, 359, 562, 565, 568, 634, 637
Sau96I	GGNCC	2 cut(s)	76, 127
SchI	GAGTC	2 cut(s)	433, 487
ScrFI	CCNGG	4 cut(s)	92, 684, 685, 695
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	375
SinI	GGWCC	2 cut(s)	76, 127
SmaI	CCCGGG	1 cut(s)	685
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	650, 810
StyD4I	CCNGG	4 cut(s)	90, 682, 683, 693
TaaI	ACNGT	3 cut(s)	28, 61, 295
TaiI	ACGT	2 cut(s)	395, 507
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	650, 810
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	6 cut(s)	142, 361, 564, 567, 570, 639
TfiI	GAWTC	2 cut(s)	283, 760
TscAI	CASTG	2 cut(s)	33, 266
TseFI	GTSAC	2 cut(s)	295, 436
TseI	GCWGC	3 cut(s)	142, 194, 633
Tsp45I	GTSAC	2 cut(s)	295, 436
TspDTI	ATGAA	2 cut(s)	340, 476
TspMI	CCCGGG	1 cut(s)	683
TspRI	CASTG	2 cut(s)	33, 266
VpaK11BI	GGWCC	2 cut(s)	76, 127
XmaI	CCCGGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.