Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Forward (+)

59887219 .. 59894632

Gene Structure 7414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG323700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGACGACATGAAAGACAAGGTCAAGGGCTTCATCAAGAACCCATTCTCGTCTTCTTCCTCTGGGGTCGACACAGTGAAGCAAGAGGCCGGAGCCCACAAGCTGACGGTGGTCGGGAAAGTGGACCCTTCAAAGCTCCAGGAACAACTCGCCGGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGTCCAAGAAAGAGAAATACGACAACAGCAACAAGAAGCAACCTGAAAAAGCAGCAAACGACGACAAAAAACCCAAAGAGGTGAGAGAGCCAAAAAAATATTTACTGGTCCCTGCTAACATGCGCTTGTCTTATTGTGCACAACGTACCTACCTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

116

Amino Acids

13.04

Weight (kDa)

9.71

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AciI	CCGC	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	103, 136, 160
AluI	AGCT	3 cut(s)	103, 136, 160
Alw21I	GWGCWC	1 cut(s)	331
Alw44I	GTGCAC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	87
ApaLI	GTGCAC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	124, 175, 298
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	3 cut(s)	124, 175, 298
BaeGI	GKGCMC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	188, 243
BlsI	GCNGC	2 cut(s)	189, 244
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	3 cut(s)	124, 175, 298
BmgT120I	GGNCC	3 cut(s)	124, 175, 298
BmiI	GGNNCC	3 cut(s)	94, 126, 300
BmrFI	CCNGG	1 cut(s)	140
BoxI	GACNNNNGTC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	90, 153
BslFI	GGGAC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	97, 331
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	89
BspLI	GGNNCC	3 cut(s)	94, 126, 300
BsrI	ACTGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	76, 109
BstHHI	GCGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	313
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	81
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	3 cut(s)	124, 175, 298
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	2 cut(s)	10, 310
CviJI	RGCY	7 cut(s)	30, 89, 95, 103, 136, 160, 280
CviKI_1	RGCY	7 cut(s)	30, 89, 95, 103, 136, 160, 280
CviQI	GTAC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	3 cut(s)	124, 175, 298
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	2 cut(s)	13, 313
FaiI	YATR	2 cut(s)	11, 311
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	9, 309
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	188, 243
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	2 cut(s)	188, 243
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	2 cut(s)	188, 243
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	90, 153
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	13, 313
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HpaII	CCGG	2 cut(s)	90, 153
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	4 cut(s)	70, 124, 175, 329
Hpy188III	TCNNGA	2 cut(s)	37, 115
Hpy8I	GTNNAC	4 cut(s)	70, 124, 175, 329
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	138, 163
HpyCH4III	ACNGT	2 cut(s)	76, 109
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	329
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	2 cut(s)	13, 313
HspAI	GCGC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	92, 141
LpnPI	CCDG	8 cut(s)	48, 103, 125, 152, 166, 246, 281, 315
Lsp1109I	GCAGC	1 cut(s)	254
MaeII	ACGT	1 cut(s)	334
MboII	GAAGA	4 cut(s)	45, 48, 175, 178
MhlI	GDGCHC	2 cut(s)	97, 331
MnlI	CCTC	4 cut(s)	70, 79, 188, 262
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	1 cut(s)	349
MspI	CCGG	2 cut(s)	90, 153
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
NlaIII	CATG	2 cut(s)	13, 313
NlaIV	GGNNCC	3 cut(s)	94, 126, 300
NspI	RCATGY	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	44
PflFI	GACNNNGTC	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	189, 244
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	94, 126, 300
PspPI	GGNCC	3 cut(s)	124, 175, 298
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	349
SatI	GCNGC	2 cut(s)	188, 243
Sau96I	GGNCC	3 cut(s)	124, 175, 298
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	97, 331
SinI	GGWCC	3 cut(s)	124, 175, 298
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	76, 109
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	69
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	22, 26
TspRI	CASTG	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	20
VneI	GTGCAC	1 cut(s)	327
VpaK11BI	GGWCC	3 cut(s)	124, 175, 298
XceI	RCATGY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.