Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

28144996 .. 28147108

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGCGCTAAGAAGAGCGACGGCGGAGACAACAAGAAGGGCGGCGACGGCGCCGAGAAGAAGAAGGAGGACAACCCCATCACTGTGGTCTTGAAGATTGACATGCACTGTGACGGCTGCACTTCCAAAATCGTCAAAACCCTCAAAGGCTTTCAAGGGGTCGACACAGTGAAGCCAGAGGTCGGAGCCCACAAGCTGACGGTGGTTGGAAAAGTGGACCCTTCAAAGCTCCGGGAACAGCTCGCCGGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGCCCAAGAAAGAGAAAGACGACAACAGCAACAAGAAGCAGCCTGAGAAAGCAGCAAACGACGACAAAAAACCCAAAGAGCCTCCGGTGACGACGGCGGTTCTCAAGCTCAATCTGCACTGCGAGGGTTGCATTCAGAAGATTCGCAAGACCGTCACCAAGACCAGAGGGTTCCATGACATGAGCATTGACAAGGAGAAGGACCTGGTGACTGTGAAAGGGACAATGGACATGAAGGCGGTGGCTGAGAGTCTCAAAGCGAGGCTGAAGAGGAATGTGGAGATTGTGCCACCCAAGAAGGACAACAAGAAAGAAAAGGAGAAAGGTGAAGGCGGCGGCGGCGGCGACAATGGCGGAGGTGGCAAGAAGAAGAACAAGGAGGAAGGAGGAGAGGGTGGTAATGCTGGCGGCGGCGGAGGTGAAAAATTGGACAAGATGGATTTTCCGGTTGGTCAACCCGGGTTTGGGCAGGTTCCTCCATATGGGGTTGTTTATGGGTATGATTATCCACCACCACCAATGATCTACATGGGGAATCCTCATGCTCCGCAGATTTTCAGTGATGAGAACCCAAATGCTTGTTCAATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

291

Amino Acids

31.21

Weight (kDa)

9.28

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	31 - 83	1.9e-12	Heavy-metal-associated domain
HMA	PF00403	132 - 180	1.6e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	742
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	162
AcuI	CTGAAG	2 cut(s)	275, 569
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	4 cut(s)	182, 746, 747, 764
AgsI	TTSAA	4 cut(s)	94, 155, 225, 867
AjnI	CCWGG	1 cut(s)	486
AjuI	GAANNNNNNNTTGG	1 cut(s)	847
AluBI	AGCT	5 cut(s)	196, 229, 241, 253, 391
AluI	AGCT	5 cut(s)	196, 229, 241, 253, 391
Alw26I	GTCTC	2 cut(s)	21, 539
Ama87I	CYCGRG	1 cut(s)	740
ApeKI	GCWGC	4 cut(s)	117, 283, 322, 335
AspLEI	GCGC	2 cut(s)	8, 53
AspS9I	GGNCC	3 cut(s)	217, 268, 484
AsuC2I	CCSGG	3 cut(s)	233, 741, 742
AsuHPI	GGTGA	5 cut(s)	382, 430, 502, 620, 713
AvaI	CYCGRG	1 cut(s)	740
AvaII	GGWCC	3 cut(s)	217, 268, 484
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	4 cut(s)	104, 295, 334, 347
BccI	CCATC	2 cut(s)	86, 712
BceAI	ACGGC	4 cut(s)	37, 64, 130, 393
BciT130I	CCWGG	1 cut(s)	488
BcnI	CCSGG	3 cut(s)	233, 741, 742
BcoDI	GTCTC	2 cut(s)	21, 539
BfoI	RGCGCY	2 cut(s)	9, 54
BfuAI	ACCTGC	1 cut(s)	742
Bme1390I	CCNGG	4 cut(s)	233, 488, 741, 742
Bme18I	GGWCC	3 cut(s)	217, 268, 484
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	3 cut(s)	217, 268, 484
BmiI	GGNNCC	5 cut(s)	52, 187, 219, 455, 756
BmrFI	CCNGG	4 cut(s)	233, 488, 741, 742
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	3 cut(s)	233, 741, 742
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	740
BsaWI	WCCGGW	2 cut(s)	367, 727
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 746, 747, 764
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	1 cut(s)	740
BseLI	CCNNNNNNNGG	4 cut(s)	182, 746, 747, 764
BseMII	CTCAG	2 cut(s)	318, 519
BseRI	GAGGAG	1 cut(s)	684
BseXI	GCAGC	4 cut(s)	104, 295, 334, 347
BsgI	GTGCAG	2 cut(s)	103, 383
BshNI	GGYRCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	740
BsiSI	CCGG	5 cut(s)	232, 246, 368, 728, 741
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	4 cut(s)	182, 746, 747, 764
BsmAI	GTCTC	2 cut(s)	21, 539
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	740
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	804
BspCNI	CTCAG	2 cut(s)	319, 520
BspLI	GGNNCC	5 cut(s)	52, 187, 219, 455, 756
BspMI	ACCTGC	1 cut(s)	742
BspQI	GCTCTTC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	1 cut(s)	804
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	6 cut(s)	85, 110, 169, 202, 436, 496
Bst6I	CTCTTC	2 cut(s)	8, 545
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	243, 688
BstDEI	CTNAG	3 cut(s)	9, 327, 528
BstH2I	RGCGCY	2 cut(s)	9, 54
BstHHI	GCGC	2 cut(s)	8, 53
BstKTI	GATC	1 cut(s)	807
BstMAI	GTCTC	2 cut(s)	21, 539
BstMBI	GATC	1 cut(s)	804
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 397, 411, 621, 624, 633, 642
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	4 cut(s)	231, 486, 739, 740
BstV1I	GCAGC	4 cut(s)	104, 295, 334, 347
BstXI	CCANNNNNNTGG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	5 cut(s)	81, 106, 174, 400, 847
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	2 cut(s)	243, 688
CfoI	GCGC	2 cut(s)	8, 53
Cfr13I	GGNCC	3 cut(s)	217, 268, 484
Cfr9I	CCCGGG	1 cut(s)	740
CsiI	ACCWGGT	1 cut(s)	486
CviAII	CATG	6 cut(s)	103, 458, 463, 514, 811, 824
DdeI	CTNAG	3 cut(s)	9, 327, 528
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	1 cut(s)	806
DpnII	GATC	1 cut(s)	804
Eam1104I	CTCTTC	2 cut(s)	8, 545
EarI	CTCTTC	2 cut(s)	8, 545
EciI	GGCGGA	3 cut(s)	39, 651, 711
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	3 cut(s)	217, 268, 484
Eco57I	CTGAAG	2 cut(s)	275, 569
Eco88I	CYCGRG	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	190
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaeI	CATG	6 cut(s)	106, 461, 466, 517, 814, 827
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	6 cut(s)	102, 457, 462, 513, 810, 823
FauNDI	CATATG	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	190
GlaI	GCGC	2 cut(s)	7, 52
HaeII	RGCGCY	2 cut(s)	9, 54
HapII	CCGG	5 cut(s)	232, 246, 368, 728, 741
HhaI	GCGC	2 cut(s)	8, 53
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	106, 461, 466, 517, 814, 827
Hin6I	GCGC	2 cut(s)	6, 51
HinP1I	GCGC	2 cut(s)	6, 51
HincII	GTYRAC	2 cut(s)	163, 737
HindII	GTYRAC	2 cut(s)	163, 737
HinfI	GANTC	3 cut(s)	424, 532, 817
HpaII	CCGG	5 cut(s)	232, 246, 368, 728, 741
HphI	GGTGA	5 cut(s)	382, 430, 502, 620, 713
Hpy166II	GTNNAC	4 cut(s)	163, 217, 268, 737
Hpy188I	TCNGA	2 cut(s)	185, 420
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	4 cut(s)	163, 217, 268, 737
Hpy99I	CGWCG	4 cut(s)	23, 50, 347, 379
HpyAV	CCTTC	9 cut(s)	31, 58, 231, 256, 475, 511, 574, 605, 659
HpyCH4III	ACNGT	6 cut(s)	85, 110, 169, 202, 436, 496
HpyCH4V	TGCA	4 cut(s)	106, 120, 400, 414
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 397, 411, 621, 624, 633, 642
HpyF3I	CTNAG	3 cut(s)	9, 327, 528
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	6 cut(s)	106, 461, 466, 517, 814, 827
HspAI	GCGC	2 cut(s)	6, 51
KasI	GGCGCC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	804
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	185, 234, 832
Lsp1109I	GCAGC	4 cut(s)	104, 295, 334, 347
MabI	ACCWGGT	1 cut(s)	486
MaeIII	GTNAC	4 cut(s)	110, 370, 436, 490
MalI	GATC	1 cut(s)	806
MboI	GATC	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	707, 867
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	163, 187
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	5 cut(s)	232, 246, 368, 728, 741
MspR9I	CCNGG	4 cut(s)	233, 488, 741, 742
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	7 cut(s)	48, 397, 411, 621, 624, 633, 642
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	3 cut(s)	233, 741, 742
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	1 cut(s)	804
NlaIII	CATG	6 cut(s)	106, 461, 466, 517, 814, 827
NlaIV	GGNNCC	5 cut(s)	52, 187, 219, 455, 756
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	4 cut(s)	110, 370, 436, 490
NspI	RCATGY	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	424, 817
PfoI	TCCNGGA	1 cut(s)	231
PleI	GAGTC	1 cut(s)	540
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	540
PpuMI	RGGWCCY	1 cut(s)	484
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	5 cut(s)	52, 187, 219, 455, 756
PspPI	GGNCC	3 cut(s)	217, 268, 484
PspPPI	RGGWCCY	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	83
SalI	GTCGAC	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	804
Sau96I	GGNCC	3 cut(s)	217, 268, 484
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	4 cut(s)	233, 488, 741, 742
SduI	GDGCHC	1 cut(s)	190
SexAI	ACCWGGT	1 cut(s)	486
SfoI	GGCGCC	1 cut(s)	52
SinI	GGWCC	3 cut(s)	217, 268, 484
SmaI	CCCGGG	1 cut(s)	742
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	707, 867
SspDI	GGCGCC	1 cut(s)	50
StyD4I	CCNGG	4 cut(s)	231, 486, 739, 740
TaaI	ACNGT	6 cut(s)	85, 110, 169, 202, 436, 496
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	707, 867
TauI	GCSGC	8 cut(s)	45, 283, 618, 621, 624, 627, 693, 696
TfiI	GAWTC	2 cut(s)	424, 817
TscAI	CASTG	5 cut(s)	88, 113, 174, 407, 847
TseFI	GTSAC	4 cut(s)	110, 370, 436, 490
TseI	GCWGC	4 cut(s)	117, 283, 322, 335
Tsp45I	GTSAC	4 cut(s)	110, 370, 436, 490
TspDTI	ATGAA	1 cut(s)	530
TspMI	CCCGGG	1 cut(s)	740
TspRI	CASTG	5 cut(s)	88, 113, 174, 407, 847
VpaK11BI	GGWCC	3 cut(s)	217, 268, 484
XceI	RCATGY	1 cut(s)	106
XmaI	CCCGGG	1 cut(s)	740
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.