Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

24775787 .. 24778137

Gene Structure 2351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATCTCACTCTCCCTCGACCTCACTGCCTTTAAATACCCACTACCTCTCCCCAGTCTCACCATTTTCTCTCACAACTCTCCGATTTCCCCACTCCCACAACCAAAAAAAAAAAAAAACCAACCAAACCAGAAACTCACCATGGGCGCTAAGAAGAAGAGCGACGGCGGCGGAGACAACAAGAAGACCGGCGACGGCGCGGAGAAGAAGAAGGAGAACAACCCCATCACTGTGGTCTTGAAGATTGACATGCACTGTGACGGCTGCACTTCCAAAATCGTCAAAACCCTCAAAGCATTTGAAGGTGTCGACTCGGTGAAGCCGGAGACAGGAGCCCACAAGCTGACTGTGGTCGGAAAAGTGGACCCAGCAAAGCTCCGGGAAAAGCTCGCCGGAAAGCTGAAGAAGCAGGTGGACCTCATCTCGCCGCAGCCCAAGAAGGAGAAGGAGAAAGAGAAAGACGACAACAGCAACAAGAAGCAGCCTGAGAAAGCAGCAAAGGACGACAAAAAACCCAAAGAGCCTCCGGTGACGACGGCGGTTCTCAAGCTCAATCTGCACTGCCAGGGTTGCATTGAGAAGATTCACAAGATCGTCACCAAGACCAAAGGGTTCCATGACATGAGCATTGACAAGGAGAAGGACTTGGTGACTGTGAAGGGGGCAATGGACATGAAAGCTGTGGCTGAGAGTCTCAAAGTGAGGCTCAAGAGGAATGTGGAGATTATGCCACCCAAGAAGGAGAAAGGGGAGAAAGGCGAAGGCGGCGGGGACAATGGTGGAGGTGGTAAGAAGAACAAGGGGGAAGGAGGAGAGGGCGGCAATGCTGGTGGCGGGGGAGGTGGGACATTGGACAAGATGGATTTTCCGGCGGGCCAACCCTGGTTTGGGCAGGTTCCTCCTTATGGTCATGTTTATGGGTATGATTATCCACCACCTCCTCTTCATGCACCTCAGATGTTCAGTGATGAGAACCCAAATGCTTGCTCAATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

333

Amino Acids

35.83

Weight (kDa)

9.44

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	33 - 85	1e-12	Heavy-metal-associated domain
HMA	PF00403	138 - 185	8.3e-07	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	2 cut(s)	400, 883
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	422
AfiI	CCNNNNNNNGG	4 cut(s)	329, 887, 888, 905
AgsI	TTSAA	2 cut(s)	241, 302
AjnI	CCWGG	2 cut(s)	564, 881
AluBI	AGCT	6 cut(s)	343, 376, 388, 400, 550, 680
AluI	AGCT	6 cut(s)	343, 376, 388, 400, 550, 680
Alw26I	GTCTC	4 cut(s)	62, 168, 320, 698
AoxI	GGCC	1 cut(s)	874
ApeKI	GCWGC	4 cut(s)	264, 430, 481, 494
AspLEI	GCGC	2 cut(s)	149, 200
AspS9I	GGNCC	3 cut(s)	364, 415, 874
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	6 cut(s)	52, 130, 328, 541, 589, 661
AvaII	GGWCC	2 cut(s)	364, 415
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	4 cut(s)	251, 442, 493, 506
BccI	CCATC	2 cut(s)	233, 853
BceAI	ACGGC	4 cut(s)	181, 211, 277, 552
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	2 cut(s)	566, 883
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	4 cut(s)	62, 168, 320, 698
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	2 cut(s)	400, 883
BisI	GCNGC	8 cut(s)	169, 265, 428, 431, 482, 495, 766, 820
BlsI	GCNGC	8 cut(s)	170, 266, 429, 432, 483, 496, 767, 821
Bme1390I	CCNGG	3 cut(s)	380, 566, 883
Bme18I	GGWCC	2 cut(s)	364, 415
BmgT120I	GGNCC	3 cut(s)	364, 415, 874
BmiI	GGNNCC	4 cut(s)	334, 366, 614, 897
BmrFI	CCNGG	3 cut(s)	380, 566, 883
BmrI	ACTGGG	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	48
BoxI	GACNNNNGTC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	530, 692
BpuMI	CCSGG	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	141, 565, 881
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	4 cut(s)	329, 887, 888, 905
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	2 cut(s)	672, 829
BseBI	CCWGG	2 cut(s)	566, 883
BseDI	CCNNGG	3 cut(s)	141, 565, 881
BseLI	CCNNNNNNNGG	4 cut(s)	329, 887, 888, 905
BseMI	GCAATG	2 cut(s)	672, 829
BseMII	CTCAG	3 cut(s)	477, 678, 968
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	825, 930
BseXI	GCAGC	4 cut(s)	251, 442, 493, 506
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	2 cut(s)	250, 542
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	876
BsiSI	CCGG	6 cut(s)	189, 323, 379, 393, 527, 869
BslFI	GGGAC	2 cut(s)	785, 859
BslI	CCNNNNNNNGG	4 cut(s)	329, 887, 888, 905
BsmAI	GTCTC	4 cut(s)	62, 168, 320, 698
BsmFI	GGGAC	2 cut(s)	785, 859
BsnI	GGCC	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	3, 591
Bsp19I	CCATGG	1 cut(s)	141
BspANI	GGCC	1 cut(s)	876
BspCNI	CTCAG	3 cut(s)	478, 679, 967
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	4 cut(s)	334, 366, 614, 897
BspMI	ACCTGC	2 cut(s)	400, 883
BspQI	GCTCTTC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	672, 829
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	141, 565, 881
BssMI	GATC	2 cut(s)	3, 591
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	566, 883
Bst4CI	ACNGT	4 cut(s)	232, 257, 349, 655
Bst6I	CTCTTC	2 cut(s)	152, 948
BstC8I	GCNNGC	3 cut(s)	390, 874, 985
BstDEI	CTNAG	4 cut(s)	150, 486, 687, 954
BstDSI	CCRYGG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 200
BstKTI	GATC	2 cut(s)	6, 594
BstMAI	GTCTC	4 cut(s)	62, 168, 320, 698
BstMBI	GATC	2 cut(s)	3, 591
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 406, 556, 570, 765
BstNI	CCWGG	2 cut(s)	566, 883
BstNSI	RCATGY	1 cut(s)	253
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	3 cut(s)	378, 564, 881
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	4 cut(s)	251, 442, 493, 506
BstV2I	GAAGAC	1 cut(s)	191
BstXI	CCANNNNNNTGG	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	876
BtgI	CCRYGG	1 cut(s)	141
BtsI	GCAGTG	2 cut(s)	24, 559
BtsIMutI	CAGTG	5 cut(s)	24, 228, 253, 559, 970
BveI	ACCTGC	2 cut(s)	400, 883
Cac8I	GCNNGC	3 cut(s)	390, 874, 985
CfoI	GCGC	2 cut(s)	149, 200
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	364, 415, 874
CspCI	CAANNNNNGTGG	2 cut(s)	811, 846
CviAII	CATG	7 cut(s)	142, 250, 617, 622, 673, 911, 947
DdeI	CTNAG	4 cut(s)	150, 486, 687, 954
DpnI	GATC	2 cut(s)	5, 593
DpnII	GATC	2 cut(s)	3, 591
DraI	TTTAAA	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	152, 948
EarI	CTCTTC	2 cut(s)	152, 948
EciI	GGCGGA	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	364, 415
Eco57I	CTGAAG	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	564, 881
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	7 cut(s)	145, 253, 620, 625, 676, 914, 950
FaqI	GGGAC	2 cut(s)	785, 859
FatI	CATG	7 cut(s)	141, 249, 616, 621, 672, 910, 946
FauI	CCCGC	3 cut(s)	761, 827, 865
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	8 cut(s)	169, 265, 428, 431, 482, 495, 766, 820
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	8 cut(s)	169, 265, 428, 431, 482, 495, 766, 820
GlaI	GCGC	2 cut(s)	148, 199
GluI	GCNGC	8 cut(s)	169, 265, 428, 431, 482, 495, 766, 820
GsaI	CCCAGC	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	876
HapII	CCGG	6 cut(s)	189, 323, 379, 393, 527, 869
HhaI	GCGC	2 cut(s)	149, 200
Hin1II	CATG	7 cut(s)	145, 253, 620, 625, 676, 914, 950
Hin6I	GCGC	2 cut(s)	147, 198
HinP1I	GCGC	2 cut(s)	147, 198
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	3 cut(s)	311, 583, 691
HpaII	CCGG	6 cut(s)	189, 323, 379, 393, 527, 869
HphI	GGTGA	6 cut(s)	52, 130, 328, 541, 589, 661
Hpy166II	GTNNAC	3 cut(s)	310, 364, 415
Hpy188I	TCNGA	3 cut(s)	84, 356, 957
Hpy188III	TCNNGA	2 cut(s)	238, 709
Hpy8I	GTNNAC	3 cut(s)	310, 364, 415
Hpy99I	CGWCG	3 cut(s)	167, 197, 538
HpyAV	CCTTC	9 cut(s)	205, 296, 433, 439, 634, 652, 733, 755, 800
HpyCH4III	ACNGT	4 cut(s)	232, 257, 349, 655
HpyCH4V	TGCA	5 cut(s)	253, 267, 559, 573, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 406, 556, 570, 765
HpyF3I	CTNAG	4 cut(s)	150, 486, 687, 954
Hsp92II	CATG	7 cut(s)	145, 253, 620, 625, 676, 914, 950
HspAI	GCGC	2 cut(s)	147, 198
Kzo9I	GATC	2 cut(s)	3, 591
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	332, 381
Lsp1109I	GCAGC	4 cut(s)	251, 442, 493, 506
MaeIII	GTNAC	4 cut(s)	257, 529, 595, 649
MalI	GATC	2 cut(s)	5, 593
MboI	GATC	2 cut(s)	3, 591
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	1 cut(s)	990
MlyI	GAGTC	2 cut(s)	305, 700
MmeI	TCCRAC	1 cut(s)	334
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	2 cut(s)	230, 915
MspI	CCGG	6 cut(s)	189, 323, 379, 393, 527, 869
MspR9I	CCNGG	3 cut(s)	380, 566, 883
MvaI	CCWGG	2 cut(s)	566, 883
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	5 cut(s)	168, 406, 556, 570, 765
NciI	CCSGG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	3, 591
NlaIII	CATG	7 cut(s)	145, 253, 620, 625, 676, 914, 950
NlaIV	GGNNCC	4 cut(s)	334, 366, 614, 897
NmuCI	GTSAC	4 cut(s)	257, 529, 595, 649
NspI	RCATGY	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	583
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	8 cut(s)	170, 266, 429, 432, 483, 496, 767, 821
PleI	GAGTC	2 cut(s)	305, 699
PpsI	GAGTC	2 cut(s)	305, 699
PshAI	GACNNNNGTC	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	564, 881
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	564, 881
PspN4I	GGNNCC	4 cut(s)	334, 366, 614, 897
PspPI	GGNCC	3 cut(s)	364, 415, 874
RseI	CAYNNNNRTG	2 cut(s)	230, 915
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	8 cut(s)	169, 265, 428, 431, 482, 495, 766, 820
Sau3AI	GATC	2 cut(s)	3, 591
Sau96I	GGNCC	3 cut(s)	364, 415, 874
SchI	GAGTC	2 cut(s)	305, 700
ScrFI	CCNGG	3 cut(s)	380, 566, 883
SduI	GDGCHC	1 cut(s)	337
SinI	GGWCC	2 cut(s)	364, 415
SmiMI	CAYNNNNRTG	2 cut(s)	230, 915
SmlI	CTYRAG	2 cut(s)	545, 707
SmoI	CTYRAG	2 cut(s)	545, 707
Sse9I	AATT	1 cut(s)	990
StyD4I	CCNGG	3 cut(s)	378, 564, 881
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	4 cut(s)	232, 257, 349, 655
TaqI	TCGA	2 cut(s)	18, 309
TasI	AATT	1 cut(s)	990
TauI	GCSGC	4 cut(s)	171, 430, 768, 822
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	5 cut(s)	31, 235, 260, 566, 970
TseFI	GTSAC	4 cut(s)	257, 529, 595, 649
TseI	GCWGC	4 cut(s)	264, 430, 481, 494
Tsp45I	GTSAC	4 cut(s)	257, 529, 595, 649
TspDTI	ATGAA	2 cut(s)	689, 935
TspRI	CASTG	5 cut(s)	31, 235, 260, 566, 970
VpaK11BI	GGWCC	2 cut(s)	364, 415
XceI	RCATGY	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XmiI	GTMKAC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.