Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Forward (+)

8349129 .. 8350087

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG104100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTAACGTTTTGGGTTTTGTTATGGTGTGGCAGGAAGGAGAAGGAGCTGGTGACTCTGAAAGGGACAATAGACATGAAGGCGGTGGCTGAGAGTCTCAAAGCGAGGCTGAAGAGGAACGTGGAGATTGTGCCACCCAAGAAGGACAACAAGAAAGAAAAGGAGAAAGGTGAAGGCGGCGGCGGCGACAATGGAGGAGGTGGCAAGAAGAAGAACAAGGAGGAAGGAGGAGAGGCTGGTAATGCTGGCAGCGGCGGAGGTGAAAAATTGGACAAGATGGATTTTCCGGTTGGTCAACCCGGGTTTGGCCAGGTTCCTCCATATGGGGTTGTTTATGGGTATGATTATCCACCACCACCAATGACCTACATGGGGAATCCTCATGCACCTCAGATTTTTAGTGATGAGAACCCAAATGCTTGTTCAATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

144

Amino Acids

15.49

Weight (kDa)

8.44

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	83, 177, 180, 183, 252, 255
AclI	AACGTT	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	305, 323, 372
AgsI	TTSAA	1 cut(s)	426
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	1 cut(s)	406
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	249
AsuC2I	CCSGG	2 cut(s)	300, 301
AsuHPI	GGTGA	3 cut(s)	64, 182, 272
AvaI	CYCGRG	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	2 cut(s)	300, 301
BcoDI	GTCTC	1 cut(s)	101
BisI	GCNGC	5 cut(s)	178, 181, 184, 250, 253
BlsI	GCNGC	5 cut(s)	179, 182, 185, 251, 254
Bme1390I	CCNGG	3 cut(s)	300, 301, 311
BmeT110I	CYCGRG	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	3 cut(s)	300, 301, 311
BpuMI	CCSGG	2 cut(s)	300, 301
BsaJI	CCNNGG	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 323, 372
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	299
BseLI	CCNNNNNNNGG	3 cut(s)	305, 323, 372
BseMII	CTCAG	2 cut(s)	81, 404
BseRI	GAGGAG	2 cut(s)	210, 243
BseXI	GCAGC	1 cut(s)	261
BshFI	GGCC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	287, 300
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	305, 323, 372
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	299
BspACI	CCGC	6 cut(s)	83, 177, 180, 183, 252, 255
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	82, 403
BspLI	GGNNCC	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	90, 390
BstMAI	GTCTC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 242
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	3 cut(s)	298, 299, 309
BstV1I	GCAGC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	247
Cfr9I	CCCGGG	1 cut(s)	299
CviAII	CATG	3 cut(s)	76, 370, 383
CviJI	RGCY	5 cut(s)	49, 89, 109, 236, 309
CviKI_1	RGCY	5 cut(s)	49, 89, 109, 236, 309
DdeI	CTNAG	2 cut(s)	90, 390
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	309
FaeI	CATG	3 cut(s)	79, 373, 386
FaiI	YATR	9 cut(s)	25, 77, 322, 324, 336, 342, 371, 384, 431
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	75, 369, 382
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	5 cut(s)	178, 181, 184, 250, 253
Fsp4HI	GCNGC	5 cut(s)	178, 181, 184, 250, 253
GluI	GCNGC	5 cut(s)	178, 181, 184, 250, 253
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	2 cut(s)	287, 300
Hin1II	CATG	3 cut(s)	79, 373, 386
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HinfI	GANTC	3 cut(s)	55, 94, 376
HpaII	CCGG	2 cut(s)	287, 300
HphI	GGTGA	3 cut(s)	64, 182, 272
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	60, 393
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	6 cut(s)	31, 37, 73, 136, 167, 218
HpyCH4IV	ACGT	2 cut(s)	8, 120
HpyCH4V	TGCA	1 cut(s)	386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 242
HpyF3I	CTNAG	2 cut(s)	90, 390
HpySE526I	ACGT	2 cut(s)	8, 120
Hsp92II	CATG	3 cut(s)	79, 373, 386
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	19, 35, 222, 231, 296, 300, 313, 323
Lsp1109I	GCAGC	1 cut(s)	261
MaeII	ACGT	2 cut(s)	8, 120
MaeIII	GTNAC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	124, 220, 223
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	2 cut(s)	266, 426
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	49, 103
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	2 cut(s)	287, 300
MspR9I	CCNGG	3 cut(s)	300, 301, 311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	183, 242
NciI	CCSGG	2 cut(s)	300, 301
NdeI	CATATG	1 cut(s)	322
NlaIII	CATG	3 cut(s)	79, 373, 386
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	5 cut(s)	179, 182, 185, 251, 254
PleI	GAGTC	2 cut(s)	49, 102
PpsI	GAGTC	2 cut(s)	49, 102
Psp1406I	AACGTT	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	315
SatI	GCNGC	5 cut(s)	178, 181, 184, 250, 253
SchI	GAGTC	2 cut(s)	49, 103
ScrFI	CCNGG	3 cut(s)	300, 301, 311
SetI	ASST	9 cut(s)	11, 51, 123, 172, 202, 262, 315, 368, 391
SmaI	CCCGGG	1 cut(s)	301
Sse9I	AATT	2 cut(s)	266, 426
SsiI	CCGC	6 cut(s)	83, 177, 180, 183, 252, 255
StyD4I	CCNGG	3 cut(s)	298, 299, 309
TaiI	ACGT	2 cut(s)	11, 123
TasI	AATT	2 cut(s)	266, 426
TauI	GCSGC	4 cut(s)	180, 183, 186, 255
TfiI	GAWTC	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	92
TspMI	CCCGGG	1 cut(s)	299
XmaI	CCCGGG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.