Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

79094372 .. 79098217

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGTCTATCAACACGTCACATTGAAATGGATTGTCATTTTATTCGAGATAAGATATTGGATGGCTCAGTTAGCACTCGATATGTTGGGGTCGACACAGTGAAGCCAAAGGTCGGAGCCCACAAGCTGACGGTGGTCGGAAAAGTGGACCCTTCAAAGCTCCGGGAACAGCTCGCCGGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGCCCAAGAAAGAGAAAGACGACAATAGCAACAAGAAGAAGCCTGAGAAAGCAGCAAGCGACGACAAAAAACCCAAAGAGCCTCCGCTGACAACGGCGGTTCTCAAGCTCAATCTGCACTGCGAGGGTTGCATTCAGAAGATTCGCAAGACCGTCACCAAGACCAGAGGTGAGGAGAAGGAGCTGGTGACTCTGAAAGGGACAATAGACATGAAGGCGGTGGCTGAGAGTCTCAAAGCGAGGCTGAAGAGGAACGTGGAGATTGTGCCACCCAAGAAGGACAACAAGAAAGAAAAGGAGAAAGGTGAAGGCGGCGGCGGCGACAATGGAGGAGGTGGCAAGAAGAAGAACAAGGAGGAAGGAGGAGAGGCTGGTAATGCTGGCAGCGGCGGAGGTGAAAAATTGGACAAGATGGATTTTCCGGTTGGTCAACCCGGGTTTGGCCAGGTTCCTCCATATGGGGTTGTTTATGGGTATGATTATCCACCACCACCAATGACCTACATGGGGAATCCTCATGCACCTCAGATTTTTAGTGATGAGAACCCAAATGCTTGTTCAATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

260

Amino Acids

28.2

Weight (kDa)

9.38

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	9 cut(s)	212, 299, 311, 431, 525, 528, 531, 600, 603
AcoI	YGGCCR	1 cut(s)	655
AcuI	CTGAAG	2 cut(s)	206, 479
AfiI	CCNNNNNNNGG	4 cut(s)	113, 653, 671, 720
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	26, 156, 774
AjiI	CACGTC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	657
AjuI	GAANNNNNNNTTGG	1 cut(s)	754
AluBI	AGCT	6 cut(s)	127, 160, 172, 184, 322, 397
AluI	AGCT	6 cut(s)	127, 160, 172, 184, 322, 397
Alw26I	GTCTC	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	655
ApeKI	GCWGC	3 cut(s)	214, 266, 597
AspS9I	GGNCC	2 cut(s)	148, 199
AsuC2I	CCSGG	3 cut(s)	164, 648, 649
AsuHPI	GGTGA	5 cut(s)	361, 395, 412, 530, 620
AvaI	CYCGRG	1 cut(s)	647
AvaII	GGWCC	2 cut(s)	148, 199
BalI	TGGCCA	1 cut(s)	657
BanII	GRGCYC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	226, 278, 609
BccI	CCATC	2 cut(s)	56, 619
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	659
BcnI	CCSGG	3 cut(s)	164, 648, 649
BcoDI	GTCTC	1 cut(s)	449
BisI	GCNGC	8 cut(s)	212, 215, 267, 526, 529, 532, 598, 601
BlsI	GCNGC	8 cut(s)	213, 216, 268, 527, 530, 533, 599, 602
Bme1390I	CCNGG	4 cut(s)	164, 648, 649, 659
Bme18I	GGWCC	2 cut(s)	148, 199
BmeT110I	CYCGRG	1 cut(s)	647
BmgBI	CACGTC	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	148, 199
BmiI	GGNNCC	3 cut(s)	118, 150, 663
BmrFI	CCNGG	4 cut(s)	164, 648, 649, 659
BoxI	GACNNNNGTC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	3 cut(s)	164, 648, 649
BsaJI	CCNNGG	1 cut(s)	647
BsaWI	WCCGGW	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 653, 671, 720
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	4 cut(s)	113, 653, 671, 720
BseMII	CTCAG	4 cut(s)	81, 249, 429, 752
BseRI	GAGGAG	3 cut(s)	401, 558, 591
BseXI	GCAGC	3 cut(s)	226, 278, 609
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	4 cut(s)	163, 177, 635, 648
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	4 cut(s)	113, 653, 671, 720
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	657
BsoBI	CYCGRG	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	121
BspACI	CCGC	9 cut(s)	212, 299, 311, 431, 525, 528, 531, 600, 603
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	4 cut(s)	80, 250, 430, 751
BspLI	GGNNCC	3 cut(s)	118, 150, 663
BssECI	CCNNGG	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	3 cut(s)	100, 133, 367
Bst6I	CTCTTC	1 cut(s)	455
BstC8I	GCNNGC	3 cut(s)	174, 271, 595
BstDEI	CTNAG	4 cut(s)	67, 258, 438, 738
BstF5I	GGATG	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	449
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 328, 342, 531, 590
BstNI	CCWGG	1 cut(s)	659
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	4 cut(s)	162, 646, 647, 657
BstV1I	GCAGC	3 cut(s)	226, 278, 609
BsuRI	GGCC	1 cut(s)	657
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	105, 331
Cac8I	GCNNGC	3 cut(s)	174, 271, 595
Cfr13I	GGNCC	2 cut(s)	148, 199
Cfr9I	CCCGGG	1 cut(s)	647
CviAII	CATG	3 cut(s)	424, 718, 731
DdeI	CTNAG	4 cut(s)	67, 258, 438, 738
EaeI	YGGCCR	1 cut(s)	655
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
EciI	GGCGGA	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	148, 199
Eco57I	CTGAAG	2 cut(s)	206, 479
Eco88I	CYCGRG	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	3 cut(s)	427, 721, 734
FaiI	YATR	9 cut(s)	84, 425, 670, 672, 684, 690, 719, 732, 779
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	3 cut(s)	423, 717, 730
FauNDI	CATATG	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	8 cut(s)	212, 215, 267, 526, 529, 532, 598, 601
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	8 cut(s)	212, 215, 267, 526, 529, 532, 598, 601
GluI	GCNGC	8 cut(s)	212, 215, 267, 526, 529, 532, 598, 601
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	4 cut(s)	163, 177, 635, 648
Hin1II	CATG	3 cut(s)	427, 721, 734
HincII	GTYRAC	2 cut(s)	94, 644
HindII	GTYRAC	2 cut(s)	94, 644
HinfI	GANTC	4 cut(s)	355, 403, 442, 724
HpaII	CCGG	4 cut(s)	163, 177, 635, 648
HphI	GGTGA	5 cut(s)	361, 395, 412, 530, 620
Hpy166II	GTNNAC	4 cut(s)	94, 148, 199, 644
Hpy188I	TCNGA	5 cut(s)	116, 140, 351, 408, 741
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	4 cut(s)	94, 148, 199, 644
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	7 cut(s)	162, 187, 385, 421, 484, 515, 566
HpyCH4III	ACNGT	3 cut(s)	100, 133, 367
HpyCH4IV	ACGT	2 cut(s)	16, 468
HpyCH4V	TGCA	3 cut(s)	331, 345, 734
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 328, 342, 531, 590
HpyF3I	CTNAG	4 cut(s)	67, 258, 438, 738
HpySE526I	ACGT	2 cut(s)	16, 468
Hsp92II	CATG	3 cut(s)	427, 721, 734
LmnI	GCTCC	3 cut(s)	116, 165, 394
Lsp1109I	GCAGC	3 cut(s)	226, 278, 609
MaeII	ACGT	2 cut(s)	16, 468
MaeIII	GTNAC	3 cut(s)	17, 367, 400
MboII	GAAGA	7 cut(s)	199, 202, 262, 364, 472, 568, 571
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	657
MluCI	AATT	2 cut(s)	614, 774
MluNI	TGGCCA	1 cut(s)	657
MlyI	GAGTC	2 cut(s)	397, 451
MmeI	TCCRAC	2 cut(s)	94, 118
Mox20I	TGGCCA	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	657
MspA1I	CMGCKG	2 cut(s)	301, 600
MspI	CCGG	4 cut(s)	163, 177, 635, 648
MspR9I	CCNGG	4 cut(s)	164, 648, 649, 659
Mva1269I	GAATGC	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	659
MwoI	GCNNNNNNNGC	5 cut(s)	72, 328, 342, 531, 590
NciI	CCSGG	3 cut(s)	164, 648, 649
NdeI	CATATG	1 cut(s)	670
NlaIII	CATG	3 cut(s)	427, 721, 734
NlaIV	GGNNCC	3 cut(s)	118, 150, 663
NmuCI	GTSAC	3 cut(s)	17, 367, 400
PctI	GAATGC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	355, 724
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	8 cut(s)	213, 216, 268, 527, 530, 533, 599, 602
PleI	GAGTC	2 cut(s)	397, 450
PpsI	GAGTC	2 cut(s)	397, 450
PshAI	GACNNNNGTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	118, 150, 663
PspPI	GGNCC	2 cut(s)	148, 199
RseI	CAYNNNNRTG	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	92
SatI	GCNGC	8 cut(s)	212, 215, 267, 526, 529, 532, 598, 601
Sau96I	GGNCC	2 cut(s)	148, 199
SchI	GAGTC	2 cut(s)	397, 451
ScrFI	CCNGG	4 cut(s)	164, 648, 649, 659
SduI	GDGCHC	1 cut(s)	121
SinI	GGWCC	2 cut(s)	148, 199
SmaI	CCCGGG	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	614, 774
SsiI	CCGC	9 cut(s)	212, 299, 311, 431, 525, 528, 531, 600, 603
StyD4I	CCNGG	4 cut(s)	162, 646, 647, 657
TaaI	ACNGT	3 cut(s)	100, 133, 367
TaiI	ACGT	2 cut(s)	19, 471
TaqI	TCGA	3 cut(s)	46, 79, 93
TasI	AATT	2 cut(s)	614, 774
TauI	GCSGC	5 cut(s)	214, 528, 531, 534, 603
TfiI	GAWTC	2 cut(s)	355, 724
TscAI	CASTG	2 cut(s)	105, 338
TseFI	GTSAC	3 cut(s)	17, 367, 400
TseI	GCWGC	3 cut(s)	214, 266, 597
Tsp45I	GTSAC	3 cut(s)	17, 367, 400
TspDTI	ATGAA	1 cut(s)	440
TspMI	CCCGGG	1 cut(s)	647
TspRI	CASTG	2 cut(s)	105, 338
VpaK11BI	GGWCC	2 cut(s)	148, 199
XmaI	CCCGGG	1 cut(s)	647
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.