Rh1AG058000

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004497
Physical Location & Seq
Reverse (-)
9484810 .. 9519368
34559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG058000.1

Sequence Viewer

Length: 624 bp
ATGTCTAATATGAAAATGGATGCAAGTTTGTTAGAAGTTGAGGACAGGGATCATGTGGAAATGGTGCTTAAATGCATTGAGGATGGAGATCTCCATTGCTGGAGCTTACCAGATATTAGGGCGTTTAATATTGGACTTGGGGTCGACACAGTGAAGCCAGAGACCGGAGCCCACAAGCTGACGGTGATCGGGAAAGTGGACCCTTCAAAGCTCCGGGAACAACTCGCTAGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGTCCAAGAAAGAGAAAGACGACAACAGCAACAAGAAGCAACTTGAGAAAGCAGCAAACGACGACAAAAAACCCAAAGAGGATGAAGTGGAACCCTTCCATCCTCATGCTACAGCTGAAAGCCCTCCTAAAGTCCATTTTTTGGAGAAGGCTTTATCAGTTGCCATGTTATATGCCCTCCCTCCGAAAGTTCCCTTTCCTTCAGATTCTACTTCTGATGGAATGAATGGTCGAACAAAGGGTGCAGGGACGGATGCTTTTTGGTTAGTTTATCAAGTGCAGTTAGCTCATCAAGTCAAGGCTCTGGTCATGATGACGGTGATGCTTGAGGGGATGTTTTCATTTGGGGGGAAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

207

Amino Acids

22.97

Weight (kDa)

6.66

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 406
AccI GTMKAC 1 cut(s) 144
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 2 cut(s) 257, 450
AfiI CCNNNNNNNGG 2 cut(s) 164, 406
AgsI TTSAA 1 cut(s) 207
AhdI GACNNNNNGTC 1 cut(s) 140
AluBI AGCT 6 cut(s) 105, 178, 211, 235, 380, 551
AluI AGCT 6 cut(s) 105, 178, 211, 235, 380, 551
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 199, 250
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 196, 595
AvaII GGWCC 2 cut(s) 199, 250
BanII GRGCYC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 329
BccI CCATC 3 cut(s) 77, 372, 476
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 375
BglII AGATCT 1 cut(s) 88
BisI GCNGC 2 cut(s) 263, 318
BlsI GCNGC 2 cut(s) 264, 319
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 2 cut(s) 199, 250
BmeRI GACNNNNNGTC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 199, 250
BmiI GGNNCC 3 cut(s) 169, 201, 357
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 3 cut(s) 10, 508, 576
BpmI CTGGAG 1 cut(s) 121
BpuEI CTTGAG 2 cut(s) 329, 611
BpuMI CCSGG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 406
Bse3DI GCAATG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 87
BseGI GGATG 6 cut(s) 25, 88, 352, 364, 523, 603
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 164, 406
BseMI GCAATG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 329
BsgI GTGCAG 2 cut(s) 528, 563
BsiSI CCGG 2 cut(s) 165, 214
BslFI GGGAC 1 cut(s) 526
BslI CCNNNNNNNGG 2 cut(s) 164, 406
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 526
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 3 cut(s) 49, 88, 186
BspACI CCGC 1 cut(s) 263
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 3 cut(s) 169, 201, 357
BspPI GGATC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 94
BssMI GATC 3 cut(s) 49, 88, 186
Bst4CI ACNGT 3 cut(s) 151, 184, 583
BstF5I GGATG 6 cut(s) 25, 88, 352, 364, 523, 603
BstKTI GATC 3 cut(s) 52, 91, 189
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 3 cut(s) 49, 88, 186
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsCI GGATG 6 cut(s) 25, 88, 352, 364, 523, 603
BtsIMutI CAGTG 1 cut(s) 156
CciI TCATGA 1 cut(s) 573
Cfr13I GGNCC 2 cut(s) 199, 250
CviAII CATG 4 cut(s) 53, 371, 430, 574
DpnI GATC 3 cut(s) 51, 90, 188
DpnII GATC 3 cut(s) 49, 88, 186
DriI GACNNNNNGTC 1 cut(s) 140
Eam1105I GACNNNNNGTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 199, 250
Eco57I CTGAAG 2 cut(s) 257, 450
EcoT22I ATGCAT 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 172
FaeI CATG 4 cut(s) 56, 374, 433, 577
FaiI YATR 7 cut(s) 11, 54, 372, 431, 436, 438, 575
FaqI GGGAC 1 cut(s) 526
FatI CATG 4 cut(s) 52, 370, 429, 573
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 263, 318
FokI GGATG 6 cut(s) 32, 95, 351, 359, 530, 610
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 263, 318
FspBI CTAG 1 cut(s) 228
GluI GCNGC 2 cut(s) 263, 318
GsuI CTGGAG 1 cut(s) 121
HapII CCGG 2 cut(s) 165, 214
Hin1II CATG 4 cut(s) 56, 374, 433, 577
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 470
HpaII CCGG 2 cut(s) 165, 214
HphI GGTGA 2 cut(s) 196, 595
Hpy166II GTNNAC 3 cut(s) 145, 199, 250
Hpy188I TCNGA 3 cut(s) 450, 469, 481
Hpy188III TCNNGA 2 cut(s) 190, 574
Hpy8I GTNNAC 3 cut(s) 145, 199, 250
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 6 cut(s) 213, 238, 370, 406, 474, 610
HpyCH4III ACNGT 3 cut(s) 151, 184, 583
HpyCH4V TGCA 4 cut(s) 23, 75, 509, 544
Hsp92II CATG 4 cut(s) 56, 374, 433, 577
Kzo9I GATC 3 cut(s) 49, 88, 186
LmnI GCTCC 3 cut(s) 102, 167, 216
LpnPI CCDG 8 cut(s) 31, 85, 123, 171, 178, 227, 495, 554
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 3 cut(s) 10, 508, 576
MaeI CTAG 1 cut(s) 228
MalI GATC 3 cut(s) 51, 90, 188
MboI GATC 3 cut(s) 49, 88, 186
MboII GAAGA 2 cut(s) 250, 253
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 172
MnlI CCTC 9 cut(s) 34, 73, 263, 337, 378, 399, 452, 456, 586
Mph1103I ATGCAT 1 cut(s) 77
MseI TTAA 2 cut(s) 69, 126
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 2 cut(s) 165, 214
MspR9I CCNGG 1 cut(s) 215
NciI CCSGG 1 cut(s) 215
NdeII GATC 3 cut(s) 49, 88, 186
NlaIII CATG 4 cut(s) 56, 374, 433, 577
NlaIV GGNNCC 3 cut(s) 169, 201, 357
NsiI ATGCAT 1 cut(s) 77
PagI TCATGA 1 cut(s) 573
PfeI GAWTC 1 cut(s) 470
PflMI CCANNNNNTGG 1 cut(s) 406
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 2 cut(s) 264, 319
PspN4I GGNNCC 3 cut(s) 169, 201, 357
PspPI GGNCC 2 cut(s) 199, 250
PsuI RGATCY 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 380
RseI CAYNNNNRTG 1 cut(s) 369
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 69, 126
SatI GCNGC 2 cut(s) 263, 318
Sau3AI GATC 3 cut(s) 49, 88, 186
Sau96I GGNCC 2 cut(s) 199, 250
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 172
SetI ASST 8 cut(s) 107, 180, 213, 237, 249, 255, 382, 553
SfaNI GCATC 3 cut(s) 10, 508, 576
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 2 cut(s) 199, 250
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 308, 590
SmoI CTYRAG 2 cut(s) 308, 590
SsiI CCGC 1 cut(s) 263
SspI AATATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 3 cut(s) 151, 184, 583
TaqI TCGA 2 cut(s) 144, 496
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 2 cut(s) 69, 126
Tru9I TTAA 2 cut(s) 69, 126
TscAI CASTG 1 cut(s) 156
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 4 cut(s) 26, 363, 503, 594
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 406
VpaK11BI GGWCC 2 cut(s) 199, 250
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.