Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Forward (+)

64372764 .. 64374650

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG376900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGCGCTAAGAAGAGCGACGGCGGAGACAGCAAGAAGGGCGGCGACGGCGCCGAGAAGAAGAAGGAGGACAACCCCATCACTGTGGTCTTGAAGATTGACATGCACTGTGACGGCTGCACTTCCAAAATCGTCAAAACCCTCAAAGGCTTTCAAGGGGTCGACACAGTGAAGCCAGAGGTCGGAGCCCAGAAGCTGACGGTGGTCGGAAAAGTGGACCCTTCAAAGCTCCGGGAACAGCTGGCCGGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGCCCAAGAAAGAGAAAGACGACAACAGCAACAAGAAGCAGCCTGAGAAAGCAGCGAGCGACGACAAAAAACCCAAAGAGCCTCCGGTGACGACGGCGGTTCTCAAGCTCAATCTGCACTGCGAGGGTTGCATTCAGAAGATTCGCAAGACCGTCACCAAGACCAGAGGGTTCCATGACATGAGCATTGACAAGGAGAAGGAGCTGGTGACTCTGAAAGGGACGATGGACATGAAGGCGGTGGCTGAGAGTCTCAAAGCGAGGCTGAAGAGGAATGTGGAGATTGTGCCACCCAAGAAGGACAACAAGAAAGAAAAGGAGAAAGGTGAAGGCGGCGGCGGCGACAATGGCGGAGGTGGCAAGAAGAAGAACAAGGAGGAAGGAGGAGAGGGTGGTAATGCTGGCGGCGGCGGAGGTGAAAAATTGGACAAGATGGATTTTCCGGTTGGTCAACCCGGGTTTGGCCAGGTTCCTCCATATGGGGTTGTTTATGGGTATGATTATCCACCACCACCAATGATCTACATGGGGAATCCTCATGCTCCTCAGATTTTCAGTGATGAGAACCCAAATGCTTGTTCAATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

290

Amino Acids

31.12

Weight (kDa)

9.28

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	31 - 83	2.1e-12	Heavy-metal-associated domain
HMA	PF00403	132 - 180	2.9e-07	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	162
AcoI	YGGCCR	2 cut(s)	243, 745
AcuI	CTGAAG	2 cut(s)	275, 569
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	3 cut(s)	182, 743, 761
AgsI	TTSAA	4 cut(s)	94, 155, 225, 864
AjnI	CCWGG	1 cut(s)	747
AjuI	GAANNNNNNNTTGG	1 cut(s)	844
AluBI	AGCT	6 cut(s)	196, 229, 241, 253, 391, 487
AluI	AGCT	6 cut(s)	196, 229, 241, 253, 391, 487
Alw26I	GTCTC	2 cut(s)	21, 539
AlwNI	CAGNNNCTG	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	2 cut(s)	243, 745
ApeKI	GCWGC	4 cut(s)	117, 283, 322, 335
AspLEI	GCGC	2 cut(s)	8, 53
AspS9I	GGNCC	2 cut(s)	217, 268
AsuC2I	CCSGG	3 cut(s)	233, 738, 739
AsuHPI	GGTGA	5 cut(s)	382, 430, 502, 620, 710
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	2 cut(s)	217, 268
BalI	TGGCCA	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	4 cut(s)	104, 295, 334, 347
BccI	CCATC	3 cut(s)	86, 502, 709
BceAI	ACGGC	4 cut(s)	37, 64, 130, 393
BciT130I	CCWGG	1 cut(s)	749
BcnI	CCSGG	3 cut(s)	233, 738, 739
BcoDI	GTCTC	2 cut(s)	21, 539
BfoI	RGCGCY	2 cut(s)	9, 54
Bme1390I	CCNGG	4 cut(s)	233, 738, 739, 749
Bme18I	GGWCC	2 cut(s)	217, 268
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	217, 268
BmiI	GGNNCC	5 cut(s)	52, 187, 219, 455, 753
BmrFI	CCNGG	4 cut(s)	233, 738, 739, 749
BoxI	GACNNNNGTC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	3 cut(s)	233, 738, 739
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	737
BsaWI	WCCGGW	2 cut(s)	367, 724
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 743, 761
BseBI	CCWGG	1 cut(s)	749
BseDI	CCNNGG	1 cut(s)	737
BseLI	CCNNNNNNNGG	3 cut(s)	182, 743, 761
BseMII	CTCAG	3 cut(s)	318, 519, 842
BseRI	GAGGAG	2 cut(s)	681, 816
BseXI	GCAGC	4 cut(s)	104, 295, 334, 347
BsgI	GTGCAG	2 cut(s)	103, 383
BshFI	GGCC	2 cut(s)	245, 747
BshNI	GGYRCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	5 cut(s)	232, 246, 368, 725, 738
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	3 cut(s)	182, 743, 761
BsmAI	GTCTC	2 cut(s)	21, 539
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	245, 747
BsoBI	CYCGRG	1 cut(s)	737
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	801
BspANI	GGCC	2 cut(s)	245, 747
BspCNI	CTCAG	3 cut(s)	319, 520, 841
BspLI	GGNNCC	5 cut(s)	52, 187, 219, 455, 753
BspQI	GCTCTTC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	1 cut(s)	801
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	5 cut(s)	85, 110, 169, 202, 436
Bst6I	CTCTTC	2 cut(s)	8, 545
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	243, 340, 685
BstDEI	CTNAG	4 cut(s)	9, 327, 528, 828
BstH2I	RGCGCY	2 cut(s)	9, 54
BstHHI	GCGC	2 cut(s)	8, 53
BstKTI	GATC	1 cut(s)	804
BstMAI	GTCTC	2 cut(s)	21, 539
BstMBI	GATC	1 cut(s)	801
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 39, 48, 397, 411, 621, 630, 639
BstNI	CCWGG	1 cut(s)	749
BstNSI	RCATGY	1 cut(s)	106
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	4 cut(s)	231, 736, 737, 747
BstV1I	GCAGC	4 cut(s)	104, 295, 334, 347
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	245, 747
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	5 cut(s)	81, 106, 174, 400, 844
Cac8I	GCNNGC	3 cut(s)	243, 340, 685
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	2 cut(s)	8, 53
Cfr13I	GGNCC	2 cut(s)	217, 268
Cfr9I	CCCGGG	1 cut(s)	737
CviAII	CATG	6 cut(s)	103, 458, 463, 514, 808, 821
DdeI	CTNAG	4 cut(s)	9, 327, 528, 828
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	1 cut(s)	803
DpnII	GATC	1 cut(s)	801
EaeI	YGGCCR	2 cut(s)	243, 745
Eam1104I	CTCTTC	2 cut(s)	8, 545
EarI	CTCTTC	2 cut(s)	8, 545
EciI	GGCGGA	3 cut(s)	39, 648, 708
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	217, 268
Eco57I	CTGAAG	2 cut(s)	275, 569
Eco88I	CYCGRG	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	747
EcoT38I	GRGCYC	1 cut(s)	190
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaeI	CATG	6 cut(s)	106, 461, 466, 517, 811, 824
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	6 cut(s)	102, 457, 462, 513, 807, 820
FauNDI	CATATG	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	190
GlaI	GCGC	2 cut(s)	7, 52
HaeII	RGCGCY	2 cut(s)	9, 54
HaeIII	GGCC	2 cut(s)	245, 747
HapII	CCGG	5 cut(s)	232, 246, 368, 725, 738
HhaI	GCGC	2 cut(s)	8, 53
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	106, 461, 466, 517, 811, 824
Hin6I	GCGC	2 cut(s)	6, 51
HinP1I	GCGC	2 cut(s)	6, 51
HincII	GTYRAC	2 cut(s)	163, 734
HindII	GTYRAC	2 cut(s)	163, 734
HinfI	GANTC	4 cut(s)	424, 493, 532, 814
HpaII	CCGG	5 cut(s)	232, 246, 368, 725, 738
HphI	GGTGA	5 cut(s)	382, 430, 502, 620, 710
Hpy166II	GTNNAC	4 cut(s)	163, 217, 268, 734
Hpy188I	TCNGA	5 cut(s)	185, 209, 420, 498, 831
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	4 cut(s)	163, 217, 268, 734
Hpy99I	CGWCG	4 cut(s)	23, 50, 347, 379
HpyAV	CCTTC	9 cut(s)	31, 58, 231, 256, 475, 511, 574, 605, 656
HpyCH4III	ACNGT	5 cut(s)	85, 110, 169, 202, 436
HpyCH4V	TGCA	4 cut(s)	106, 120, 400, 414
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 39, 48, 397, 411, 621, 630, 639
HpyF3I	CTNAG	4 cut(s)	9, 327, 528, 828
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	6 cut(s)	106, 461, 466, 517, 811, 824
HspAI	GCGC	2 cut(s)	6, 51
KasI	GGCGCC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	801
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	4 cut(s)	185, 234, 484, 829
Lsp1109I	GCAGC	4 cut(s)	104, 295, 334, 347
MaeIII	GTNAC	4 cut(s)	110, 370, 436, 490
MalI	GATC	1 cut(s)	803
MboI	GATC	1 cut(s)	801
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	2 cut(s)	704, 864
MluNI	TGGCCA	1 cut(s)	747
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	2 cut(s)	487, 541
MmeI	TCCRAC	2 cut(s)	163, 187
Mox20I	TGGCCA	1 cut(s)	747
MscI	TGGCCA	1 cut(s)	747
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	5 cut(s)	232, 246, 368, 725, 738
MspR9I	CCNGG	4 cut(s)	233, 738, 739, 749
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	749
MwoI	GCNNNNNNNGC	8 cut(s)	30, 39, 48, 397, 411, 621, 630, 639
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	3 cut(s)	233, 738, 739
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	1 cut(s)	801
NlaIII	CATG	6 cut(s)	106, 461, 466, 517, 811, 824
NlaIV	GGNNCC	5 cut(s)	52, 187, 219, 455, 753
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	4 cut(s)	110, 370, 436, 490
NspI	RCATGY	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	424, 814
PfoI	TCCNGGA	1 cut(s)	231
PleI	GAGTC	2 cut(s)	487, 540
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	2 cut(s)	487, 540
PshAI	GACNNNNGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	5 cut(s)	52, 187, 219, 455, 753
PspPI	GGNCC	2 cut(s)	217, 268
PstNI	CAGNNNCTG	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	83
SalI	GTCGAC	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	801
Sau96I	GGNCC	2 cut(s)	217, 268
SchI	GAGTC	2 cut(s)	487, 541
ScrFI	CCNGG	4 cut(s)	233, 738, 739, 749
SduI	GDGCHC	1 cut(s)	190
SfoI	GGCGCC	1 cut(s)	52
SinI	GGWCC	2 cut(s)	217, 268
SmaI	CCCGGG	1 cut(s)	739
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	704, 864
SspDI	GGCGCC	1 cut(s)	50
StyD4I	CCNGG	4 cut(s)	231, 736, 737, 747
TaaI	ACNGT	5 cut(s)	85, 110, 169, 202, 436
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	704, 864
TauI	GCSGC	7 cut(s)	45, 283, 618, 621, 624, 690, 693
TfiI	GAWTC	2 cut(s)	424, 814
TscAI	CASTG	5 cut(s)	88, 113, 174, 407, 844
TseFI	GTSAC	4 cut(s)	110, 370, 436, 490
TseI	GCWGC	4 cut(s)	117, 283, 322, 335
Tsp45I	GTSAC	4 cut(s)	110, 370, 436, 490
TspDTI	ATGAA	1 cut(s)	530
TspMI	CCCGGG	1 cut(s)	737
TspRI	CASTG	5 cut(s)	88, 113, 174, 407, 844
VpaK11BI	GGWCC	2 cut(s)	217, 268
XceI	RCATGY	1 cut(s)	106
XmaI	CCCGGG	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.