Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8079862.1

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 546

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8079862.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

attcagaagattcgcaagaccgtcaccaagaccagaggtgaggttatcatttctctcagctgtgtttttgtgtacttcatatggcggcgtttgggtggtggtggtggccggatgctaacgttttgggttttgttatggtgtggcaggaaggagaaggagctggtgactctgaaagggacaatagacatgaaggcggtggctgagagtctcaaagcgaggctgaagaggaacgtggagattgtgccacccaagaaggacaacaagaaagaaaaggagaaaggtgaaggcggcggcggcgacaatggaggaggtggcaagaagaagaacaaggaggaaggaggagaggctggtaatgctggcagcggcggaggtgaaaaattggacaagatggattttccggttggtcaacccgggtttggccaggttcctccatatggggttgtttatgggtatgattatccaccaccaccaatgacctacatggggaatcctcatgcacctcagatttttagtgatgagaacccaaatgcttgttcaattatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

181

Amino Acids

19.66

Weight (kDa)

9.44

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	85, 194, 288, 291, 294, 363, 366
AclI	AACGTT	1 cut(s)	119
AcoI	YGGCCR	2 cut(s)	106, 418
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	3 cut(s)	416, 434, 483
AgsI	TTSAA	1 cut(s)	537
AjnI	CCWGG	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	1 cut(s)	517
AluBI	AGCT	2 cut(s)	60, 160
AluI	AGCT	2 cut(s)	60, 160
Alw26I	GTCTC	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	2 cut(s)	106, 418
ApeKI	GCWGC	1 cut(s)	360
AsuC2I	CCSGG	2 cut(s)	411, 412
AsuHPI	GGTGA	5 cut(s)	16, 50, 175, 293, 383
AvaI	CYCGRG	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	422
BcnI	CCSGG	2 cut(s)	411, 412
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	6 cut(s)	86, 289, 292, 295, 361, 364
BlsI	GCNGC	6 cut(s)	87, 290, 293, 296, 362, 365
Bme1390I	CCNGG	3 cut(s)	411, 412, 422
BmeT110I	CYCGRG	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	3 cut(s)	411, 412, 422
BmsI	GCATC	1 cut(s)	102
BpuMI	CCSGG	2 cut(s)	411, 412
BsaJI	CCNNGG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	3 cut(s)	416, 434, 483
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	416, 434, 483
BseMII	CTCAG	3 cut(s)	70, 192, 515
BseRI	GAGGAG	2 cut(s)	321, 354
BseXI	GCAGC	1 cut(s)	372
BshFI	GGCC	2 cut(s)	108, 420
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	3 cut(s)	109, 398, 411
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	3 cut(s)	416, 434, 483
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	108, 420
BsoBI	CYCGRG	1 cut(s)	410
BspACI	CCGC	7 cut(s)	85, 194, 288, 291, 294, 363, 366
BspANI	GGCC	2 cut(s)	108, 420
BspCNI	CTCAG	3 cut(s)	69, 193, 514
BspLI	GGNNCC	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	56, 201, 501
BstF5I	GGATG	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 353
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	409, 410, 420
BstV1I	GCAGC	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	108, 420
BtsCI	GGATG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	358
Cfr9I	CCCGGG	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	3 cut(s)	187, 481, 494
CviJI	RGCY	7 cut(s)	60, 108, 160, 200, 220, 347, 420
CviKI_1	RGCY	7 cut(s)	60, 108, 160, 200, 220, 347, 420
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	3 cut(s)	56, 201, 501
EaeI	YGGCCR	2 cut(s)	106, 418
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	420
FaeI	CATG	3 cut(s)	190, 484, 497
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	3 cut(s)	186, 480, 493
FauNDI	CATATG	2 cut(s)	80, 433
Fnu4HI	GCNGC	6 cut(s)	86, 289, 292, 295, 361, 364
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	6 cut(s)	86, 289, 292, 295, 361, 364
GluI	GCNGC	6 cut(s)	86, 289, 292, 295, 361, 364
HaeIII	GGCC	2 cut(s)	108, 420
HapII	CCGG	3 cut(s)	109, 398, 411
Hin1II	CATG	3 cut(s)	190, 484, 497
HincII	GTYRAC	1 cut(s)	407
HindII	GTYRAC	1 cut(s)	407
HinfI	GANTC	4 cut(s)	10, 166, 205, 487
HpaII	CCGG	3 cut(s)	109, 398, 411
HphI	GGTGA	5 cut(s)	16, 50, 175, 293, 383
Hpy166II	GTNNAC	2 cut(s)	73, 407
Hpy188I	TCNGA	3 cut(s)	6, 171, 504
Hpy8I	GTNNAC	2 cut(s)	73, 407
HpyAV	CCTTC	6 cut(s)	142, 148, 184, 247, 278, 329
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	119, 231
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 353
HpyF3I	CTNAG	3 cut(s)	56, 201, 501
HpySE526I	ACGT	2 cut(s)	119, 231
Hsp92II	CATG	3 cut(s)	190, 484, 497
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	2 cut(s)	119, 231
MaeIII	GTNAC	2 cut(s)	22, 163
MboII	GAAGA	4 cut(s)	19, 235, 331, 334
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	2 cut(s)	377, 537
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	160, 214
Mox20I	TGGCCA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	60, 363
MspI	CCGG	3 cut(s)	109, 398, 411
MspR9I	CCNGG	3 cut(s)	411, 412, 422
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	294, 353
NciI	CCSGG	2 cut(s)	411, 412
NdeI	CATATG	2 cut(s)	80, 433
NlaIII	CATG	3 cut(s)	190, 484, 497
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	2 cut(s)	22, 163
PfeI	GAWTC	2 cut(s)	10, 487
PkrI	GCNGC	6 cut(s)	87, 290, 293, 296, 362, 365
PleI	GAGTC	2 cut(s)	160, 213
PpsI	GAGTC	2 cut(s)	160, 213
Psp1406I	AACGTT	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	60
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SatI	GCNGC	6 cut(s)	86, 289, 292, 295, 361, 364
SchI	GAGTC	2 cut(s)	160, 214
ScrFI	CCNGG	3 cut(s)	411, 412, 422
SfaNI	GCATC	1 cut(s)	102
SmaI	CCCGGG	1 cut(s)	412
Sse9I	AATT	2 cut(s)	377, 537
SsiI	CCGC	7 cut(s)	85, 194, 288, 291, 294, 363, 366
StyD4I	CCNGG	3 cut(s)	409, 410, 420
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	122, 234
TasI	AATT	2 cut(s)	377, 537
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	5 cut(s)	88, 291, 294, 297, 366
TfiI	GAWTC	2 cut(s)	10, 487
TseFI	GTSAC	2 cut(s)	22, 163
TseI	GCWGC	1 cut(s)	360
Tsp45I	GTSAC	2 cut(s)	22, 163
TspDTI	ATGAA	2 cut(s)	67, 203
TspMI	CCCGGG	1 cut(s)	410
XmaI	CCCGGG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.