Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

6803242 .. 6809983

Gene Structure 6742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG049100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGTCTTTACTTCTGCTGATTGCGGAAGACTGACTGCGGAAAGGGTCGACACAGTGAAGCCAGAGACCGGAGCCCACAAGCTGACGGTGATCGGGAAAGTGGACCCTTCAAAGCTCCGGGAACAACTCGCTAGAAAGCTGAAGAAGAAGGTGGACCTCATCTCGCCGCAGTCCAAGAAAGAGAAAGACGACAACAGCAACAAGAAGCAACTTGAGAAAGCAGCAAACGACGACAAAAAACCCAAAGAGGTGAGAGAGCCAAAAAAATATGTACTGGTCCCTGCTAACATGCGCTTGTCTTATTGTGCACAACGTACCTACCTCACTCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

111

Amino Acids

12.63

Weight (kDa)

9.78

Isoelectric Point (pI)

20.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	3 cut(s)	24, 38, 167
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	273, 316
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	111
AluBI	AGCT	3 cut(s)	82, 115, 139
AluI	AGCT	3 cut(s)	82, 115, 139
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	59
Alw44I	GTGCAC	1 cut(s)	306
ApaLI	GTGCAC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	103, 154, 277
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	100, 262
AvaII	GGWCC	3 cut(s)	103, 154, 277
BaeGI	GKGCMC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	167, 222
BlsI	GCNGC	2 cut(s)	168, 223
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	3 cut(s)	103, 154, 277
BmgT120I	GGNCC	3 cut(s)	103, 154, 277
BmiI	GGNNCC	3 cut(s)	73, 105, 279
BmrFI	CCNGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	69, 118
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	76, 310
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	3 cut(s)	24, 38, 167
BspLI	GGNNCC	3 cut(s)	73, 105, 279
BspTNI	GGTCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	55, 88
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	60
CfoI	GCGC	1 cut(s)	294
Cfr13I	GGNCC	3 cut(s)	103, 154, 277
Csp6I	GTAC	2 cut(s)	272, 315
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	6 cut(s)	61, 74, 82, 115, 139, 259
CviKI_1	RGCY	6 cut(s)	61, 74, 82, 115, 139, 259
CviQI	GTAC	2 cut(s)	272, 315
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	3 cut(s)	103, 154, 277
Eco57I	CTGAAG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	292
FaiI	YATR	2 cut(s)	270, 290
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	167, 222
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	2 cut(s)	167, 222
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	2 cut(s)	167, 222
HapII	CCGG	2 cut(s)	69, 118
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HpaII	CCGG	2 cut(s)	69, 118
HphI	GGTGA	2 cut(s)	100, 262
Hpy166II	GTNNAC	4 cut(s)	49, 103, 154, 308
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	4 cut(s)	49, 103, 154, 308
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	117, 142
HpyCH4III	ACNGT	2 cut(s)	55, 88
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	71, 120
LpnPI	CCDG	5 cut(s)	75, 82, 131, 260, 294
Lsp1109I	GCAGC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	313
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	3 cut(s)	39, 154, 157
MhlI	GDGCHC	2 cut(s)	76, 310
MluCI	AATT	1 cut(s)	331
MnlI	CCTC	3 cut(s)	167, 241, 332
MspI	CCGG	2 cut(s)	69, 118
MspR9I	CCNGG	1 cut(s)	119
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	3 cut(s)	73, 105, 279
NspI	RCATGY	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	168, 223
PspN4I	GGNNCC	3 cut(s)	73, 105, 279
PspPI	GGNCC	3 cut(s)	103, 154, 277
RsaI	GTAC	2 cut(s)	273, 316
RsaNI	GTAC	2 cut(s)	272, 315
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	2 cut(s)	167, 222
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	3 cut(s)	103, 154, 277
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	76, 310
SetI	ASST	9 cut(s)	84, 117, 141, 153, 159, 252, 316, 320, 324
SinI	GGWCC	3 cut(s)	103, 154, 277
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	3 cut(s)	24, 38, 167
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	55, 88
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	331
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	1 cut(s)	169
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	221
TspRI	CASTG	1 cut(s)	60
VneI	GTGCAC	1 cut(s)	306
VpaK11BI	GGWCC	3 cut(s)	103, 154, 277
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.