Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004497

Physical Location & Seq

Genomic Coordinates Reverse (-)

7762696 .. 7764905

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G108800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCAAGAAGAAGAACAAAAGTGGCGGTGAGAACAACAACAACGATGTGGCTGAGAAGAAGAACGGCGATGGAGGTGAGAAGAACAGCGGCGCTGGGGGTGAGAAGAAGAAGGAGGACGGCCCCATCCCCGTTGTGTTGAAGGTTGACATGCACTGTGAGGGCTGTGCTACTAAGATTGTCAAATGCGTCAAAGATTTTCAAGGCGTGGAGTCGGTGAAATCTGAGTTCCAGGCGAATAAGCTGACGGTGGTCGGAAACGTGGACCCCACACAGCTCAAAGACAAGCTGGCCGCCAAGACCAAGAAGAAAGTCGACCTCATCTCTCCCCAGCCCAAAAAGGACAACAAAGACGACGCCAAGAAAAACCAGCCTGAGAAAGCAAACGACGACAACAAAAAACCCAAAGAGGCTCCGGTGACGACGGCGGTTCTCAAGCTGAGCTTGCACTGCCAGGGATGCATCGGGAAGATTCAGAAGACTGTGAGCAAGACCAAAGGGTTCCATGATATGACCATTGATAGGCAGAAGGATTTGGTGACGGTGAAGGGCTCAATGGACATGAAGGAATTGGCTGAGACTTTGAAGGAGAAGCTCAAGAGGCCTGTTGACATTGTGCCACCAAAGAAGGAGAAGGAGAAGGAGAAAGGCGAAAACAACGGCGGCGGCGGCGGCGGTGGAGATAAGAAGAAAAAGGAGGAAGAGGGGGGCAATGGTGGTGGAAAAATGGAGGGGCACAAAATGGAGTATCCAGCGGGTCTACCGGGATTCGGACAAGTTCCATATGGAATGGTATATGGACCTGGATTCGGCGCAGGATACGGGTACCCGCCTCATGCTCTGCCTCCTCAAACTCTGCCTCCTCAAGCTCCTTACATAGGGAACCCACTTCATGCACCTCAGATGTTCAGCGATGAGAACCCAAATGCTTGCTCCATAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0008270 GO:0009909 GO:0009910 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0031974 GO:0031981 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0098771 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

315

Amino Acids

33.7

Weight (kDa)

9.16

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60800 AT5G60800
fragaria_vesca	FvH4_3g31060 FvH4_3g31060
malus_domestica	MD00G1033400.v1.1 MD00G1102700.v1.1
prunus_persica	Prupe.6G108800_v2.0.a1
pyrus_communis	pycom11g11880
rosa_chinensis	RchiOBHm_Chr5g0057721
rosa_laevigata	RLG00000035171
rosa_multiflora	Rmu_co8079862.1_g000001 Rmu_sc0001849.1_g000008 Rmu_sc0002589.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022790
rosa_rugosa	Rorug05G0309100
rosa_samantha	Rh1AG058000 Rh1BG049100 Rh1BG308100 Rh1CG323700 Rh1CG323800 Rh1DG340200 Rh3BG104100 Rh4CG207800 Rh5AG192400 Rh5AG376900 Rh5BG281200 Rh5BG388400 Rh5CG412800 Rh5DG402700 Rh7AG428400
rosa_wichuraiana	Rw2G051380 Rw5G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	825
AccB1I	GGYRCC	1 cut(s)	825
AccI	GTMKAC	2 cut(s)	315, 760
AcoI	YGGCCR	2 cut(s)	3, 291
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	1 cut(s)	827
AfiI	CCNNNNNNNGG	4 cut(s)	522, 770, 809, 878
AgsI	TTSAA	3 cut(s)	142, 203, 586
AjnI	CCWGG	3 cut(s)	231, 453, 802
AluBI	AGCT	7 cut(s)	244, 277, 289, 439, 444, 595, 869
AluI	AGCT	7 cut(s)	244, 277, 289, 439, 444, 595, 869
Alw26I	GTCTC	1 cut(s)	572
AoxI	GGCC	4 cut(s)	3, 121, 291, 602
Asp718I	GGTACC	1 cut(s)	825
AspLEI	GCGC	2 cut(s)	95, 815
AspS9I	GGNCC	3 cut(s)	122, 265, 800
AsuC2I	CCSGG	1 cut(s)	765
AsuHPI	GGTGA	7 cut(s)	41, 89, 113, 229, 430, 550, 556
AvaII	GGWCC	2 cut(s)	265, 800
BaeGI	GKGCMC	1 cut(s)	738
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	825
BanII	GRGCYC	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	485
BccI	CCATC	2 cut(s)	65, 134
BceAI	ACGGC	4 cut(s)	82, 136, 441, 676
BciT130I	CCWGG	3 cut(s)	233, 455, 804
BciVI	GTATCC	2 cut(s)	759, 812
BcnI	CCSGG	1 cut(s)	765
BcoDI	GTCTC	1 cut(s)	572
BfoI	RGCGCY	1 cut(s)	96
BfuI	GTATCC	2 cut(s)	759, 812
BisI	GCNGC	6 cut(s)	91, 294, 664, 667, 670, 673
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	6 cut(s)	92, 295, 665, 668, 671, 674
Bme1390I	CCNGG	4 cut(s)	233, 455, 765, 804
Bme18I	GGWCC	2 cut(s)	265, 800
BmgT120I	GGNCC	3 cut(s)	122, 265, 800
BmiI	GGNNCC	6 cut(s)	124, 267, 414, 503, 827, 884
BmrFI	CCNGG	4 cut(s)	233, 455, 765, 804
BmsI	GCATC	2 cut(s)	449, 471
BoxI	GACNNNNGTC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	485
Bpu1102I	GCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	3 cut(s)	419, 581, 849
BpuMI	CCSGG	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	454
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	4 cut(s)	522, 770, 809, 878
Bse3DI	GCAATG	1 cut(s)	718
BseBI	CCWGG	3 cut(s)	233, 455, 804
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	2 cut(s)	126, 464
BseLI	CCNNNNNNNGG	4 cut(s)	522, 770, 809, 878
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	6 cut(s)	45, 216, 366, 431, 567, 914
BseRI	GAGGAG	2 cut(s)	837, 852
BseSI	GKGCMC	1 cut(s)	738
BseYI	CCCAGC	2 cut(s)	95, 330
BshFI	GGCC	4 cut(s)	5, 123, 293, 604
BshNI	GGYRCC	1 cut(s)	825
BsiSI	CCGG	2 cut(s)	416, 764
BslI	CCNNNNNNNGG	4 cut(s)	522, 770, 809, 878
BsmAI	GTCTC	1 cut(s)	572
BsnI	GGCC	4 cut(s)	5, 123, 293, 604
Bsp1286I	GDGCHC	2 cut(s)	554, 738
Bsp1720I	GCTNAGC	1 cut(s)	440
BspANI	GGCC	4 cut(s)	5, 123, 293, 604
BspCNI	CTCAG	6 cut(s)	46, 217, 367, 432, 568, 913
BspLI	GGNNCC	6 cut(s)	124, 267, 414, 503, 827, 884
BspT107I	GGYRCC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	718
BssECI	CCNNGG	1 cut(s)	454
BssNI	GRCGYC	1 cut(s)	357
Bst2UI	CCWGG	3 cut(s)	233, 455, 804
Bst4CI	ACNGT	4 cut(s)	158, 250, 484, 544
Bst6I	CTCTTC	1 cut(s)	696
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	3 cut(s)	291, 446, 931
BstDEI	CTNAG	7 cut(s)	54, 174, 225, 375, 440, 576, 900
BstENI	CCTNNNNNAGG	1 cut(s)	876
BstF5I	GGATG	2 cut(s)	126, 464
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	95, 815
BstMAI	GTCTC	1 cut(s)	572
BstMWI	GCNNNNNNNGC	6 cut(s)	445, 450, 459, 601, 669, 672
BstNI	CCWGG	3 cut(s)	233, 455, 804
BstNSI	RCATGY	1 cut(s)	154
BstPAI	GACNNNNGTC	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	231, 453, 763, 802
BstSLI	GKGCMC	1 cut(s)	738
BstV2I	GAAGAC	1 cut(s)	485
BsuI	GTATCC	2 cut(s)	759, 812
BsuRI	GGCC	4 cut(s)	5, 123, 293, 604
BtgZI	GCGATG	2 cut(s)	84, 927
BtsCI	GGATG	2 cut(s)	126, 464
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	154, 448
Cac8I	GCNNGC	3 cut(s)	291, 446, 931
CfoI	GCGC	2 cut(s)	95, 815
Cfr13I	GGNCC	3 cut(s)	122, 265, 800
CseI	GACGC	2 cut(s)	178, 365
Csp6I	GTAC	1 cut(s)	826
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	5 cut(s)	151, 506, 562, 836, 893
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	7 cut(s)	54, 174, 225, 375, 440, 576, 900
EaeI	YGGCCR	2 cut(s)	3, 291
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	554
Eco47I	GGWCC	2 cut(s)	265, 800
EcoNI	CCTNNNNNAGG	1 cut(s)	876
EcoRII	CCWGG	3 cut(s)	231, 453, 802
EcoT22I	ATGCAT	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	554
FaeI	CATG	5 cut(s)	154, 509, 565, 839, 896
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	5 cut(s)	150, 505, 561, 835, 892
FauI	CCCGC	2 cut(s)	748, 837
FauNDI	CATATG	1 cut(s)	784
FblI	GTMKAC	2 cut(s)	315, 760
Fnu4HI	GCNGC	6 cut(s)	91, 294, 664, 667, 670, 673
FokI	GGATG	2 cut(s)	113, 471
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	6 cut(s)	91, 294, 664, 667, 670, 673
GlaI	GCGC	2 cut(s)	94, 814
GluI	GCNGC	6 cut(s)	91, 294, 664, 667, 670, 673
GsaI	CCCAGC	2 cut(s)	99, 334
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	4 cut(s)	5, 123, 293, 604
HapII	CCGG	2 cut(s)	416, 764
HgaI	GACGC	2 cut(s)	178, 365
HhaI	GCGC	2 cut(s)	95, 815
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	5 cut(s)	154, 509, 565, 839, 896
Hin6I	GCGC	2 cut(s)	93, 813
HinP1I	GCGC	2 cut(s)	93, 813
HincII	GTYRAC	3 cut(s)	148, 316, 610
HindII	GTYRAC	3 cut(s)	148, 316, 610
HinfI	GANTC	4 cut(s)	212, 472, 768, 807
HpaII	CCGG	2 cut(s)	416, 764
HphI	GGTGA	7 cut(s)	41, 89, 113, 229, 430, 550, 556
Hpy166II	GTNNAC	5 cut(s)	148, 265, 316, 610, 761
Hpy188I	TCNGA	5 cut(s)	226, 257, 477, 773, 903
Hpy188III	TCNNGA	2 cut(s)	466, 598
Hpy8I	GTNNAC	5 cut(s)	148, 265, 316, 610, 761
Hpy99I	CGWCG	3 cut(s)	359, 392, 427
HpyAV	CCTTC	9 cut(s)	106, 136, 523, 541, 559, 580, 622, 628, 634
HpyCH4III	ACNGT	4 cut(s)	158, 250, 484, 544
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	154, 448, 462, 896
HpyF10VI	GCNNNNNNNGC	6 cut(s)	445, 450, 459, 601, 669, 672
HpyF3I	CTNAG	7 cut(s)	54, 174, 225, 375, 440, 576, 900
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	154, 509, 565, 839, 896
HspAI	GCGC	2 cut(s)	93, 813
KpnI	GGTACC	1 cut(s)	829
LmnI	GCTCC	3 cut(s)	418, 874, 938
LweI	GCATC	2 cut(s)	449, 471
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	418, 538
MhlI	GDGCHC	2 cut(s)	554, 738
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	569
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	235
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	90, 755
MspI	CCGG	2 cut(s)	416, 764
MspR9I	CCNGG	4 cut(s)	233, 455, 765, 804
MvaI	CCWGG	3 cut(s)	233, 455, 804
MwoI	GCNNNNNNNGC	6 cut(s)	445, 450, 459, 601, 669, 672
NciI	CCSGG	1 cut(s)	765
NdeI	CATATG	1 cut(s)	784
NlaIII	CATG	5 cut(s)	154, 509, 565, 839, 896
NlaIV	GGNNCC	6 cut(s)	124, 267, 414, 503, 827, 884
NmuCI	GTSAC	2 cut(s)	418, 538
NsiI	ATGCAT	1 cut(s)	464
NspI	RCATGY	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	604
PfeI	GAWTC	3 cut(s)	472, 768, 807
PkrI	GCNGC	6 cut(s)	92, 295, 665, 668, 671, 674
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PshAI	GACNNNNGTC	1 cut(s)	251
Psp6I	CCWGG	3 cut(s)	231, 453, 802
PspFI	CCCAGC	2 cut(s)	95, 330
PspGI	CCWGG	3 cut(s)	231, 453, 802
PspN4I	GGNNCC	6 cut(s)	124, 267, 414, 503, 827, 884
PspPI	GGNCC	3 cut(s)	122, 265, 800
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
SalI	GTCGAC	1 cut(s)	314
SatI	GCNGC	6 cut(s)	91, 294, 664, 667, 670, 673
Sau96I	GGNCC	3 cut(s)	122, 265, 800
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	4 cut(s)	233, 455, 765, 804
SduI	GDGCHC	2 cut(s)	554, 738
SfaNI	GCATC	2 cut(s)	449, 471
SinI	GGWCC	2 cut(s)	265, 800
SmlI	CTYRAG	3 cut(s)	434, 596, 864
SmoI	CTYRAG	3 cut(s)	434, 596, 864
Sse9I	AATT	1 cut(s)	569
SseBI	AGGCCT	1 cut(s)	604
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	4 cut(s)	231, 453, 763, 802
TaaI	ACNGT	4 cut(s)	158, 250, 484, 544
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	569
TauI	GCSGC	6 cut(s)	93, 296, 666, 669, 672, 675
TfiI	GAWTC	3 cut(s)	472, 768, 807
TscAI	CASTG	2 cut(s)	161, 455
TseFI	GTSAC	2 cut(s)	418, 538
Tsp45I	GTSAC	2 cut(s)	418, 538
TspDTI	ATGAA	2 cut(s)	578, 881
TspRI	CASTG	2 cut(s)	161, 455
VpaK11BI	GGWCC	2 cut(s)	265, 800
XagI	CCTNNNNNAGG	1 cut(s)	876
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	2 cut(s)	315, 760
Zsp2I	ATGCAT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.