Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Forward (+)

24783429 .. 24786265

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCATCTTTGGGTAGGATTTTGTCTGTTTCCTACCCACCGGATCCGTACACTTGGCGGTTTTCACAGTATAAGCTGTCTTCTTCACTAGGGCGAAATCGGAGACTCAGATGGCGATTCACGGCGTTGGATCCTGAATCTTCCTCACTCGACTCTGAATCCTCCGCCGATAAATTCGCTTCCGGGTTTTGTATAATAGAAGGGCCTGAAACAGTACAGGACTTTGCCAAAATGCAATTACAAGAGATTCAAGATAACATTCGAAGCCGACGAAACAAGATCTTCTTGCACATGGAAGAGGTGCGGAGGCTAAGAATACAACAACGGATTAAAAACACAGAACTTGGTATCATTAACGAAGAACAAGAACATGAATTACCTAATTTCCCATCTTTTATCCCATTCTTACCTCCATTGACTGCTGCCAATTTGAAAGTCTATTACGCAACTTGTTTCTCACTCATCGCGGGGATTATCCTATTCGGTGGTCTACTAGCTCCTACTCTAGAGCTGAAGTTAGGTATAGGAGGTACATCGTATGCAGATTTCATTCAAAGCCTTCATCTACCTATGCAATTGAGTCAAGTGGACCCGATAGTAGCGTCGTTTTCTGGAGGAGCGGTTGGTGTGATTTCGGCTTTGATGGTAGTAGAAGTTAACAACGTAAAGCAGCAAGAGCACAAGAGATGCAAATACTGTCTAGGAACTGGGTATCTAGCATGTGCTCGTTGCTCTAGCACAGGTGCTCTTGTTTTAACTGAACCAGTCTCAGCTATTGCTGGTGGGAATCATTCTCTATCACCGCCCAAAACCGAAAGATGTTCAAACTGTTCAGGTGCCGGAAAGGTGATGTGCCCGACATGTCTGTGCACAGGAATGGCTATGGCCAGTGAGCATGATCCTCGTATCGACCCTTTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

33.79

Weight (kDa)

7.52

Isoelectric Point (pI)

59.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	836
AccBSI	CCGCTC	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	490
AccII	CGCG	1 cut(s)	467
AciI	CCGC	6 cut(s)	58, 165, 304, 467, 620, 803
AclWI	GGATC	5 cut(s)	38, 51, 125, 138, 893
AcoI	YGGCCR	1 cut(s)	885
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	533
AfaI	GTAC	3 cut(s)	50, 216, 532
AflIII	ACRYGT	1 cut(s)	860
AgsI	TTSAA	4 cut(s)	251, 433, 554, 825
AluBI	AGCT	4 cut(s)	76, 497, 511, 773
AluI	AGCT	4 cut(s)	76, 497, 511, 773
Alw21I	GWGCWC	4 cut(s)	681, 727, 748, 872
Alw26I	GTCTC	2 cut(s)	97, 772
Alw44I	GTGCAC	1 cut(s)	868
AlwI	GGATC	5 cut(s)	38, 51, 125, 138, 893
AoxI	GGCC	2 cut(s)	203, 885
ApaLI	GTGCAC	1 cut(s)	868
ApeKI	GCWGC	2 cut(s)	422, 670
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	203, 589
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	792, 859
AsuII	TTCGAA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	589
BaeGI	GKGCMC	2 cut(s)	857, 872
BalI	TGGCCA	1 cut(s)	887
BamHI	GGATCC	2 cut(s)	43, 130
BanI	GGYRCC	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	4 cut(s)	681, 727, 748, 872
BbvI	GCAGC	2 cut(s)	409, 682
BccI	CCATC	3 cut(s)	105, 397, 637
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	884, 918
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	97, 772
BfaI	CTAG	6 cut(s)	89, 494, 506, 701, 716, 735
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	2 cut(s)	423, 671
BlsI	GCNGC	2 cut(s)	424, 672
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	589
BmgT120I	GGNCC	2 cut(s)	203, 589
BmiI	GGNNCC	4 cut(s)	45, 132, 591, 838
BmrFI	CCNGG	1 cut(s)	184
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	1 cut(s)	677
BmuI	ACTGGG	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bse1I	ACTGG	3 cut(s)	712, 764, 888
BseMII	CTCAG	2 cut(s)	121, 783
BseNI	ACTGG	3 cut(s)	712, 764, 888
BseRI	GAGGAG	1 cut(s)	630
BseSI	GKGCMC	2 cut(s)	857, 872
BseXI	GCAGC	2 cut(s)	409, 682
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	205, 887
BshNI	GGYRCC	1 cut(s)	836
BsiHKAI	GWGCWC	4 cut(s)	681, 727, 748, 872
BsiSI	CCGG	3 cut(s)	41, 183, 840
BsmAI	GTCTC	2 cut(s)	97, 772
BsnI	GGCC	2 cut(s)	205, 887
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	5 cut(s)	681, 727, 748, 857, 872
Bsp143I	GATC	4 cut(s)	43, 130, 279, 898
BspACI	CCGC	6 cut(s)	58, 165, 304, 467, 620, 803
BspANI	GGCC	2 cut(s)	205, 887
BspCNI	CTCAG	2 cut(s)	120, 782
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	4 cut(s)	45, 132, 591, 838
BspPI	GGATC	5 cut(s)	38, 51, 125, 138, 893
BspT104I	TTCGAA	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	836
BsrBI	CCGCTC	1 cut(s)	620
BsrI	ACTGG	3 cut(s)	712, 764, 888
BssMI	GATC	4 cut(s)	43, 130, 279, 898
Bst4CI	ACNGT	4 cut(s)	69, 214, 698, 830
Bst6I	CTCTTC	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	107, 311, 769
BstFNI	CGCG	1 cut(s)	467
BstKTI	GATC	4 cut(s)	46, 133, 282, 901
BstMAI	GTCTC	2 cut(s)	97, 772
BstMBI	GATC	4 cut(s)	43, 130, 279, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	676
BstNSI	RCATGY	2 cut(s)	723, 864
BstSCI	CCNGG	1 cut(s)	182
BstSLI	GKGCMC	2 cut(s)	857, 872
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	409, 682
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	3 cut(s)	43, 130, 279
BstYI	RGATCY	3 cut(s)	43, 130, 279
BsuRI	GGCC	2 cut(s)	205, 887
BtgZI	GCGATG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	895
Cfr13I	GGNCC	2 cut(s)	203, 589
CseI	GACGC	1 cut(s)	591
Csp6I	GTAC	3 cut(s)	49, 215, 531
CviAII	CATG	5 cut(s)	292, 371, 720, 861, 896
CviQI	GTAC	3 cut(s)	49, 215, 531
DdeI	CTNAG	3 cut(s)	107, 311, 769
DpnI	GATC	4 cut(s)	45, 132, 281, 900
DpnII	GATC	4 cut(s)	43, 130, 279, 898
EaeI	YGGCCR	1 cut(s)	885
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	203
FaeI	CATG	5 cut(s)	295, 374, 723, 864, 899
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	5 cut(s)	291, 370, 719, 860, 895
FauI	CCCGC	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	423, 671
Fsp4HI	GCNGC	2 cut(s)	423, 671
FspBI	CTAG	6 cut(s)	89, 494, 506, 701, 716, 735
GluI	GCNGC	2 cut(s)	423, 671
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	205, 887
HapII	CCGG	3 cut(s)	41, 183, 840
HgaI	GACGC	1 cut(s)	591
Hin1II	CATG	5 cut(s)	295, 374, 723, 864, 899
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HinfI	GANTC	8 cut(s)	105, 117, 137, 152, 158, 247, 580, 787
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	3 cut(s)	41, 183, 840
HphI	GGTGA	2 cut(s)	792, 859
Hpy166II	GTNNAC	5 cut(s)	51, 491, 589, 658, 870
Hpy188I	TCNGA	3 cut(s)	102, 110, 157
Hpy188III	TCNNGA	4 cut(s)	134, 251, 506, 612
Hpy8I	GTNNAC	5 cut(s)	51, 491, 589, 658, 870
Hpy99I	CGWCG	2 cut(s)	273, 607
HpyAV	CCTTC	2 cut(s)	194, 569
HpyCH4III	ACNGT	4 cut(s)	69, 214, 698, 830
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	6 cut(s)	235, 289, 542, 574, 690, 870
HpyF10VI	GCNNNNNNNGC	1 cut(s)	676
HpyF3I	CTNAG	3 cut(s)	107, 311, 769
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	5 cut(s)	295, 374, 723, 864, 899
KspAI	GTTAAC	1 cut(s)	658
Kzo9I	GATC	4 cut(s)	43, 130, 279, 898
LmnI	GCTCC	2 cut(s)	502, 617
Lsp1109I	GCAGC	2 cut(s)	409, 682
LweI	GCATC	1 cut(s)	677
MaeI	CTAG	6 cut(s)	89, 494, 506, 701, 716, 735
MaeII	ACGT	1 cut(s)	663
MalI	GATC	4 cut(s)	45, 132, 281, 900
MbiI	CCGCTC	1 cut(s)	620
MboI	GATC	4 cut(s)	43, 130, 279, 898
MboII	GAAGA	6 cut(s)	72, 75, 132, 274, 308, 371
MfeI	CAATTG	1 cut(s)	575
MflI	RGATCY	3 cut(s)	43, 130, 279
MhlI	GDGCHC	5 cut(s)	681, 727, 748, 857, 872
MlsI	TGGCCA	1 cut(s)	887
MluCI	AATT	6 cut(s)	173, 236, 374, 382, 427, 575
MluNI	TGGCCA	1 cut(s)	887
MlyI	GAGTC	3 cut(s)	99, 146, 589
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	8 cut(s)	154, 172, 292, 300, 420, 521, 608, 912
Mox20I	TGGCCA	1 cut(s)	887
MscI	TGGCCA	1 cut(s)	887
MseI	TTAA	4 cut(s)	330, 354, 657, 755
MslI	CAYNNNNRTG	2 cut(s)	865, 875
Msp20I	TGGCCA	1 cut(s)	887
MspI	CCGG	3 cut(s)	41, 183, 840
MspR9I	CCNGG	1 cut(s)	184
MunI	CAATTG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	676
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	4 cut(s)	43, 130, 279, 898
NlaIII	CATG	5 cut(s)	295, 374, 723, 864, 899
NlaIV	GGNNCC	4 cut(s)	45, 132, 591, 838
NspI	RCATGY	2 cut(s)	723, 864
NspV	TTCGAA	1 cut(s)	262
PciI	ACATGT	1 cut(s)	860
PcsI	WCGNNNNNNNCGW	2 cut(s)	268, 915
PfeI	GAWTC	5 cut(s)	117, 137, 158, 247, 787
PkrI	GCNGC	2 cut(s)	424, 672
PleI	GAGTC	3 cut(s)	99, 146, 588
PpsI	GAGTC	3 cut(s)	99, 146, 588
PscI	ACATGT	1 cut(s)	860
PspN4I	GGNNCC	4 cut(s)	45, 132, 591, 838
PspPI	GGNCC	2 cut(s)	203, 589
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PsuI	RGATCY	3 cut(s)	43, 130, 279
RsaI	GTAC	3 cut(s)	50, 216, 532
RsaNI	GTAC	3 cut(s)	49, 215, 531
RseI	CAYNNNNRTG	2 cut(s)	865, 875
SaqAI	TTAA	4 cut(s)	330, 354, 657, 755
SatI	GCNGC	2 cut(s)	423, 671
Sau3AI	GATC	4 cut(s)	43, 130, 279, 898
Sau96I	GGNCC	2 cut(s)	203, 589
SchI	GAGTC	3 cut(s)	99, 146, 589
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	5 cut(s)	681, 727, 748, 857, 872
SfaNI	GCATC	1 cut(s)	677
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	1 cut(s)	589
SmiMI	CAYNNNNRTG	2 cut(s)	865, 875
Sse9I	AATT	6 cut(s)	173, 236, 374, 382, 427, 575
SsiI	CCGC	6 cut(s)	58, 165, 304, 467, 620, 803
SspMI	CTAG	6 cut(s)	89, 494, 506, 701, 716, 735
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	4 cut(s)	69, 214, 698, 830
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	4 cut(s)	150, 262, 909, 918
TasI	AATT	6 cut(s)	173, 236, 374, 382, 427, 575
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	5 cut(s)	117, 137, 158, 247, 787
Tru1I	TTAA	4 cut(s)	330, 354, 657, 755
Tru9I	TTAA	4 cut(s)	330, 354, 657, 755
TscAI	CASTG	1 cut(s)	895
TseI	GCWGC	2 cut(s)	422, 670
TspDTI	ATGAA	3 cut(s)	387, 538, 551
TspGWI	ACGGA	2 cut(s)	36, 340
TspRI	CASTG	1 cut(s)	895
VneI	GTGCAC	1 cut(s)	868
VpaK11BI	GGWCC	1 cut(s)	589
XapI	RAATTY	1 cut(s)	173
XbaI	TCTAGA	1 cut(s)	505
XceI	RCATGY	2 cut(s)	723, 864
XmiI	GTMKAC	1 cut(s)	490
XspI	CTAG	6 cut(s)	89, 494, 506, 701, 716, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.