Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

31571679 .. 31578189

Gene Structure 6511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1245900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGTCGGTGCTTCAAGATTTACATTTGTTTTGCCTCCATTTCTCAGAGAGCCTTCTTCTCTGCTTCTCTGGAATTTACCAGTGAAAGAAACCTCAAGAGAAACAGAAAGCTCTGCCTTCTGGTTTGAGAGAGAGAGAGAGATGCTCTGCTGCGGCAGACTTTTGGCCGTGTCTTTCCCCGTAAATCGGTGCAGTCCGTACAAACTGCATAGCGCCGGCTGCTCCAAATTCAGCTACCCAAGAAGCCCCATATCAACAAGCAGCTCCAGATGGCGATCCCTGGCCATGGCTTCGGAGCCCGACTCCTCCTCTTTCGCTCCGTCTGTCGATTCTGATCCCAATCCCGCCGCCGATACAAACCCCGCCGGATTTTGTATCATAGAGGGGCCTGAAACAGTGCAGGACTTTGCCACAATGGAGCTGCAAGAAATTCAAGATAATATTCGGAGTCGGCGCAACAAAATTTTCTTGCATATGGAGGAGGTTCGCAGGCTGAGGATACAACAGCGGATTAAACGCGCAGAGCTTGGAGCGGTAAATGAAGATCAAGAAAACGAACTTCCTAGTTTTCCATCATTCATTCCATTTTTGCCTCCCCTGAGTTCAGACAACCTTAAGCAGTATTATGCTGTATGTTATTCAATTATTGCGGGGTTTATCCTTTTCGGTGGCCTCATAGCACCCTCCTTGGAGTTGAAGCTTGGAATAGGAGGCACATCGTATAAAGATTTTATAGTAAATATGCATCTGCCGTTGCAGTTGAGTCAAGTTGATCCCATAGTGGCGTCGTTTTCTGGAGGAGCAGTTGGAGTGATCTCAGCATTGATGGTAGTTGAAATAAACAATGCGAAACAGCAGGAGCATAAACGATGCAAATATTGTCTTGGAACTGGATATCTTGCTTGTGCTCGTTGCTCCAGCACTGGAACCCTTGTTCTTACTGAACCATTATCGACAGCTGATGGCGGAAACCAACCCCTATCTCTGCCAAAAACTGAACGATGTTCAAATTGCTCAGGAGCGGGAAAGGACAAGGTCACCGGGAGAGTGCTATTCCAAGGGCTGAGTAATAATGTTGTCTATCCACTTCCCATAATCAAACCACAGAGGTCTATTTCTCCTGTTTTTAATCCAGTTGCATTTGTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

42.06

Weight (kDa)

8.22

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	533, 1022
AccII	CGCG	1 cut(s)	519
AciI	CCGC	9 cut(s)	153, 345, 348, 363, 508, 533, 650, 966, 1022
AclWI	GGATC	3 cut(s)	270, 329, 767
AcoI	YGGCCR	2 cut(s)	165, 282
AcsI	RAATTY	4 cut(s)	73, 227, 429, 462
AcyI	GRCGYC	1 cut(s)	785
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	186, 286
AflII	CTTAAG	1 cut(s)	614
AgsI	TTSAA	6 cut(s)	15, 434, 642, 697, 836, 1008
AjnI	CCWGG	1 cut(s)	279
AloI	GAACNNNNNNTCC	2 cut(s)	918, 950
AluBI	AGCT	7 cut(s)	111, 234, 264, 421, 526, 700, 959
AluI	AGCT	7 cut(s)	111, 234, 264, 421, 526, 700, 959
Alw21I	GWGCWC	1 cut(s)	910
AlwI	GGATC	3 cut(s)	270, 329, 767
AoxI	GGCC	4 cut(s)	165, 282, 386, 670
ApeKI	GCWGC	4 cut(s)	150, 219, 261, 421
ApoI	RAATTY	4 cut(s)	73, 227, 429, 462
AspLEI	GCGC	3 cut(s)	215, 456, 521
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	1042
AsuHPI	GGTGA	1 cut(s)	1030
BalI	TGGCCA	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	910
BbvCI	CCTCAGC	1 cut(s)	494
BbvI	GCAGC	4 cut(s)	137, 206, 273, 408
BccI	CCATC	4 cut(s)	264, 580, 820, 956
BceAI	ACGGC	2 cut(s)	152, 736
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	1042
BfaI	CTAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	614
BfuI	GTATCC	1 cut(s)	492
BisI	GCNGC	6 cut(s)	151, 154, 220, 262, 348, 422
BlsI	GCNGC	6 cut(s)	152, 155, 221, 263, 349, 423
Bme1390I	CCNGG	2 cut(s)	281, 1042
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	3 cut(s)	297, 387, 928
BmrFI	CCNGG	2 cut(s)	281, 1042
BmsI	GCATC	3 cut(s)	132, 754, 860
BplI	GAGNNNNNCTC	4 cut(s)	129, 161, 287, 319
BpmI	CTGGAG	3 cut(s)	250, 816, 901
Bpu10I	CCTNAGC	2 cut(s)	494, 1015
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	1042
BsaBI	GATNNNNATC	3 cut(s)	274, 333, 339
BsaHI	GRCGYC	1 cut(s)	785
BsaJI	CCNNGG	4 cut(s)	279, 285, 687, 1057
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 286
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	4 cut(s)	80, 895, 928, 1133
Bse8I	GATNNNNATC	3 cut(s)	274, 333, 339
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	4 cut(s)	279, 285, 687, 1057
BseJI	GATNNNNATC	3 cut(s)	274, 333, 339
BseLI	CCNNNNNNNGG	2 cut(s)	186, 286
BseMII	CTCAG	6 cut(s)	58, 485, 590, 831, 1029, 1055
BseNI	ACTGG	4 cut(s)	80, 895, 928, 1133
BseRI	GAGGAG	4 cut(s)	295, 298, 494, 813
BseXI	GCAGC	4 cut(s)	137, 206, 273, 408
BsgI	GTGCAG	2 cut(s)	211, 419
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	4 cut(s)	167, 284, 388, 672
BsiHKAI	GWGCWC	1 cut(s)	910
BsiSI	CCGG	3 cut(s)	216, 366, 1041
BslI	CCNNNNNNNGG	2 cut(s)	186, 286
BsnI	GGCC	4 cut(s)	167, 284, 388, 672
Bsp1286I	GDGCHC	2 cut(s)	300, 910
Bsp143I	GATC	5 cut(s)	275, 334, 544, 772, 813
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	9 cut(s)	153, 345, 348, 363, 508, 533, 650, 966, 1022
BspANI	GGCC	4 cut(s)	167, 284, 388, 672
BspCNI	CTCAG	6 cut(s)	57, 486, 591, 830, 1028, 1056
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	297, 387, 928
BspPI	GGATC	3 cut(s)	270, 329, 767
BspTI	CTTAAG	1 cut(s)	614
BsrBI	CCGCTC	2 cut(s)	533, 1022
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	4 cut(s)	80, 895, 928, 1133
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	4 cut(s)	279, 285, 687, 1057
BssMI	GATC	5 cut(s)	275, 334, 544, 772, 813
BssNI	GRCGYC	1 cut(s)	785
BssT1I	CCWWGG	3 cut(s)	285, 687, 1057
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	785
BstAFI	CTTAAG	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	217, 491
BstDEI	CTNAG	6 cut(s)	44, 494, 599, 817, 1015, 1064
BstDSI	CCRYGG	1 cut(s)	285
BstEII	GGTNACC	1 cut(s)	1036
BstFNI	CGCG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	3 cut(s)	215, 456, 521
BstKTI	GATC	5 cut(s)	278, 337, 547, 775, 816
BstMBI	GATC	5 cut(s)	275, 334, 544, 772, 813
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	281
BstPI	GGTNACC	1 cut(s)	1036
BstSCI	CCNGG	2 cut(s)	279, 1040
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	4 cut(s)	137, 206, 273, 408
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	167, 284, 388, 672
BtgI	CCRYGG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	87, 402, 921
Cac8I	GCNNGC	2 cut(s)	217, 491
CfoI	GCGC	3 cut(s)	215, 456, 521
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	386
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	286
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	6 cut(s)	44, 494, 599, 817, 1015, 1064
DpnI	GATC	5 cut(s)	277, 336, 546, 774, 815
DpnII	GATC	5 cut(s)	275, 334, 544, 772, 813
EaeI	YGGCCR	2 cut(s)	165, 282
EciI	GGCGGA	1 cut(s)	981
Eco130I	CCWWGG	3 cut(s)	285, 687, 1057
Eco24I	GRGCYC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	896
Eco91I	GGTNACC	1 cut(s)	1036
EcoO109I	RGGNCCY	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	1036
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	896
EcoT14I	CCWWGG	3 cut(s)	285, 687, 1057
EcoT22I	ATGCAT	1 cut(s)	747
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	3 cut(s)	285, 687, 1057
FaeI	CATG	1 cut(s)	289
FatI	CATG	1 cut(s)	285
FauI	CCCGC	4 cut(s)	352, 370, 643, 1015
FauNDI	CATATG	1 cut(s)	474
Fnu4HI	GCNGC	6 cut(s)	151, 154, 220, 262, 348, 422
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	6 cut(s)	151, 154, 220, 262, 348, 422
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	3 cut(s)	214, 455, 520
GluI	GCNGC	6 cut(s)	151, 154, 220, 262, 348, 422
GsuI	CTGGAG	3 cut(s)	250, 816, 901
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	167, 284, 388, 672
HapII	CCGG	3 cut(s)	216, 366, 1041
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	3 cut(s)	215, 456, 521
Hin1I	GRCGYC	1 cut(s)	785
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	3 cut(s)	213, 454, 519
HinP1I	GCGC	3 cut(s)	213, 454, 519
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	4 cut(s)	302, 329, 448, 763
HpaII	CCGG	3 cut(s)	216, 366, 1041
HphI	GGTGA	1 cut(s)	1030
Hpy188I	TCNGA	5 cut(s)	47, 295, 334, 447, 607
Hpy188III	TCNNGA	8 cut(s)	15, 70, 96, 267, 434, 548, 795, 1017
Hpy99I	CGWCG	1 cut(s)	790
HpyAV	CCTTC	2 cut(s)	63, 127
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	9 cut(s)	192, 208, 400, 424, 472, 745, 757, 873, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	6 cut(s)	44, 494, 599, 817, 1015, 1064
Hsp92I	GRCGYC	1 cut(s)	785
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	3 cut(s)	213, 454, 519
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	275, 334, 544, 772, 813
Lsp1109I	GCAGC	4 cut(s)	137, 206, 273, 408
LweI	GCATC	3 cut(s)	132, 754, 860
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	1036
MalI	GATC	5 cut(s)	277, 336, 546, 774, 815
MbiI	CCGCTC	2 cut(s)	533, 1022
MboI	GATC	5 cut(s)	275, 334, 544, 772, 813
MboII	GAAGA	2 cut(s)	48, 554
MhlI	GDGCHC	2 cut(s)	300, 910
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	6 cut(s)	73, 227, 429, 462, 642, 1009
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	3 cut(s)	296, 457, 772
MmeI	TCCRAC	1 cut(s)	787
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	747
MroNI	GCCGGC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	3 cut(s)	513, 615, 1128
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	508, 959
MspCI	CTTAAG	1 cut(s)	614
MspI	CCGG	3 cut(s)	216, 366, 1041
MspR9I	CCNGG	2 cut(s)	281, 1042
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	219
NaeI	GCCGGC	1 cut(s)	217
NciI	CCSGG	1 cut(s)	1042
NcoI	CCATGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	474
NdeII	GATC	5 cut(s)	275, 334, 544, 772, 813
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	3 cut(s)	297, 387, 928
NmuCI	GTSAC	1 cut(s)	1036
NsiI	ATGCAT	1 cut(s)	747
PdiI	GCCGGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	1034
PkrI	GCNGC	6 cut(s)	152, 155, 221, 263, 349, 423
PleI	GAGTC	3 cut(s)	296, 456, 771
PpsI	GAGTC	3 cut(s)	296, 456, 771
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	1036
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	297, 387, 928
PspPI	GGNCC	1 cut(s)	386
PsyI	GACNNNGTC	1 cut(s)	1034
PvuII	CAGCTG	1 cut(s)	959
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	3 cut(s)	513, 615, 1128
SatI	GCNGC	6 cut(s)	151, 154, 220, 262, 348, 422
Sau3AI	GATC	5 cut(s)	275, 334, 544, 772, 813
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	3 cut(s)	296, 457, 772
ScrFI	CCNGG	2 cut(s)	281, 1042
SduI	GDGCHC	2 cut(s)	300, 910
SfaNI	GCATC	3 cut(s)	132, 754, 860
SmlI	CTYRAG	2 cut(s)	94, 614
SmoI	CTYRAG	2 cut(s)	94, 614
Sse9I	AATT	6 cut(s)	73, 227, 429, 462, 642, 1009
SsiI	CCGC	9 cut(s)	153, 345, 348, 363, 508, 533, 650, 966, 1022
SspI	AATATT	2 cut(s)	442, 878
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	279, 1040
StyI	CCWWGG	3 cut(s)	285, 687, 1057
TaaI	ACNGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	327, 953
TasI	AATT	6 cut(s)	73, 227, 429, 462, 642, 1009
TauI	GCSGC	2 cut(s)	156, 350
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	3 cut(s)	513, 615, 1128
Tru9I	TTAA	3 cut(s)	513, 615, 1128
TscAI	CASTG	3 cut(s)	87, 402, 928
TseFI	GTSAC	1 cut(s)	1036
TseI	GCWGC	4 cut(s)	150, 219, 261, 421
Tsp45I	GTSAC	1 cut(s)	1036
TspDTI	ATGAA	2 cut(s)	555, 568
TspGWI	ACGGA	2 cut(s)	186, 309
TspRI	CASTG	3 cut(s)	87, 402, 928
Tth111I	GACNNNGTC	1 cut(s)	1034
Vha464I	CTTAAG	1 cut(s)	614
XapI	RAATTY	4 cut(s)	73, 227, 429, 462
XspI	CTAG	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.