Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

31371429 .. 31375188

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1243400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAGAACTGGTTGAAGCTGCCGCTCGTCTGTACATTATATGCAGCGAATGGGGCGTCAACATTTTGGATTCAATATGTGATGGCCATGTTGACTGCTTGGAGTGGTTGTACATGATTTTGTTTTTGATCGTCGGAGTTTCGGTACTATGTCCTTCCATAATATTTTGTATCATAGAGGGGCCTGAAACAGTGCAGGATTTTGCCACAATGGAGCTGCAGGAAATTCAAGATAATATTCGGAGTCGTCGCAACAAAATTTTCTTGCATATGGAGGAGGTTCGCAGGCTGAGGATACAACAGCGGATTAAACGTGCAGAGCTTGGAGCGGTAAATGAAGATCAAGAAAACGAACTTCCTAGTTTTCCATCGTTCATTCCATTTTTGCCTCCCCTGAGTTCAGACAACCTTAAGCAGTATTATGCTGTTTGTTATTCAATTATTGCGGGGTTTATCCTTTTCGGTGGCCTCATAGCACCCTCCTTGGAGTTGAAGCTGGGAATAGGAGGCACATCATATAAAGACTTTATAGTAAATATGCATCTGCCGTTGCAGTTGAGTCAAGTTGATCCCATAGTGGCGTCATTCTCTGGAGGAGCAGTCGGAGTGATCTCAGCATTGATGGTAGTTGAAATAAACAATGTGAAACAGCAGGAGCATAAACGATGCAAATATTGTCTTGGAACTGGATCTCTTGCTTGTGCTCGTTGCTCCAGCACTGGAACCCTTGTTCTTACTGAACCAGTATCGACAGCTGATGGCGGAAACCAACCCCTATCTCTGCCAAAAACTGAACGATGTTCAAATTGCTCAGGAGCGGGAAAGGTAATGTGCCCGACATGCCTTTGCACTGGAATGGCGATGGCAAGTGAACACGACCCTCGGATCGATCCCTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

32.9

Weight (kDa)

5.04

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	26, 329, 818
AciI	CCGC	6 cut(s)	24, 304, 329, 446, 762, 818
AclWI	GGATC	4 cut(s)	563, 697, 884, 893
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	225, 258
AcyI	GRCGYC	2 cut(s)	57, 581
AfaI	GTAC	3 cut(s)	35, 113, 147
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	7 cut(s)	17, 75, 230, 438, 493, 632, 804
AloI	GAACNNNNNNTCC	2 cut(s)	714, 746
AluBI	AGCT	5 cut(s)	20, 217, 322, 496, 755
AluI	AGCT	5 cut(s)	20, 217, 322, 496, 755
Alw21I	GWGCWC	1 cut(s)	706
AlwI	GGATC	4 cut(s)	563, 697, 884, 893
AoxI	GGCC	3 cut(s)	85, 182, 466
ApeKI	GCWGC	3 cut(s)	20, 45, 217
ApoI	RAATTY	2 cut(s)	225, 258
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspS9I	GGNCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	836
BalI	TGGCCA	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	706
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	7, 57, 204
BccI	CCATC	5 cut(s)	77, 376, 616, 752, 856
BceAI	ACGGC	1 cut(s)	532
BciVI	GTATCC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	218
BfrI	CTTAAG	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	4 cut(s)	21, 24, 46, 218
BlsI	GCNGC	4 cut(s)	22, 25, 47, 219
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	183, 724
BmsI	GCATC	2 cut(s)	550, 656
BpmI	CTGGAG	2 cut(s)	612, 697
Bpu10I	CCTNAGC	2 cut(s)	290, 811
Bsa29I	ATCGAT	1 cut(s)	888
BsaHI	GRCGYC	2 cut(s)	57, 581
BsaJI	CCNNGG	2 cut(s)	483, 881
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 129, 159, 585, 615
Bse1I	ACTGG	5 cut(s)	15, 691, 724, 743, 856
BseCI	ATCGAT	1 cut(s)	888
BseDI	CCNNGG	2 cut(s)	483, 881
BseMII	CTCAG	4 cut(s)	281, 386, 627, 825
BseNI	ACTGG	5 cut(s)	15, 691, 724, 743, 856
BseRI	GAGGAG	2 cut(s)	290, 609
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	3 cut(s)	7, 57, 204
BseYI	CCCAGC	1 cut(s)	496
BsgI	GTGCAG	2 cut(s)	215, 336
BshFI	GGCC	3 cut(s)	87, 184, 468
BshVI	ATCGAT	1 cut(s)	888
BsiHKAI	GWGCWC	1 cut(s)	706
BsnI	GGCC	3 cut(s)	87, 184, 468
Bsp1286I	GDGCHC	2 cut(s)	706, 836
Bsp1407I	TGTACA	2 cut(s)	33, 111
Bsp143I	GATC	7 cut(s)	129, 340, 568, 609, 689, 885, 889
BspACI	CCGC	6 cut(s)	24, 304, 329, 446, 762, 818
BspANI	GGCC	3 cut(s)	87, 184, 468
BspCNI	CTCAG	4 cut(s)	282, 387, 626, 824
BspDI	ATCGAT	1 cut(s)	888
BspLI	GGNNCC	2 cut(s)	183, 724
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	4 cut(s)	563, 697, 884, 893
BspTI	CTTAAG	1 cut(s)	410
BsrBI	CCGCTC	3 cut(s)	26, 329, 818
BsrGI	TGTACA	2 cut(s)	33, 111
BsrI	ACTGG	5 cut(s)	15, 691, 724, 743, 856
BssECI	CCNNGG	2 cut(s)	483, 881
BssMI	GATC	7 cut(s)	129, 340, 568, 609, 689, 885, 889
BssNI	GRCGYC	2 cut(s)	57, 581
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	193
BstACI	GRCGYC	2 cut(s)	57, 581
BstAFI	CTTAAG	1 cut(s)	410
BstAUI	TGTACA	2 cut(s)	33, 111
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	4 cut(s)	290, 395, 613, 811
BstKTI	GATC	7 cut(s)	132, 343, 571, 612, 692, 888, 892
BstMBI	GATC	7 cut(s)	129, 340, 568, 609, 689, 885, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 840
BstNSI	RCATGY	1 cut(s)	843
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	836
BstV1I	GCAGC	3 cut(s)	7, 57, 204
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
Bsu15I	ATCGAT	1 cut(s)	888
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	87, 184, 468
BsuTUI	ATCGAT	1 cut(s)	888
BtgZI	GCGATG	1 cut(s)	875
BtsIMutI	CAGTG	3 cut(s)	198, 717, 849
Cac8I	GCNNGC	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	888
CseI	GACGC	2 cut(s)	46, 570
Csp6I	GTAC	3 cut(s)	34, 112, 146
CviAII	CATG	3 cut(s)	89, 115, 840
CviJI	RGCY	9 cut(s)	20, 87, 184, 217, 289, 322, 468, 496, 755
CviKI_1	RGCY	9 cut(s)	20, 87, 184, 217, 289, 322, 468, 496, 755
CviQI	GTAC	3 cut(s)	34, 112, 146
DdeI	CTNAG	4 cut(s)	290, 395, 613, 811
DpnI	GATC	7 cut(s)	131, 342, 570, 611, 691, 887, 891
DpnII	GATC	7 cut(s)	129, 340, 568, 609, 689, 885, 889
EaeI	YGGCCR	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	777
Eco130I	CCWWGG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	3 cut(s)	92, 118, 843
FatI	CATG	3 cut(s)	88, 114, 839
FauI	CCCGC	2 cut(s)	439, 811
FauNDI	CATATG	1 cut(s)	270
Fnu4HI	GCNGC	4 cut(s)	21, 24, 46, 218
Fsp4HI	GCNGC	4 cut(s)	21, 24, 46, 218
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	4 cut(s)	21, 24, 46, 218
GsaI	CCCAGC	1 cut(s)	500
GsuI	CTGGAG	2 cut(s)	612, 697
HaeIII	GGCC	3 cut(s)	87, 184, 468
HgaI	GACGC	2 cut(s)	46, 570
Hin1I	GRCGYC	2 cut(s)	57, 581
Hin1II	CATG	3 cut(s)	92, 118, 843
HincII	GTYRAC	2 cut(s)	61, 94
HindII	GTYRAC	2 cut(s)	61, 94
HinfI	GANTC	3 cut(s)	71, 244, 559
Hpy166II	GTNNAC	3 cut(s)	61, 94, 872
Hpy188I	TCNGA	5 cut(s)	137, 243, 403, 605, 885
Hpy188III	TCNNGA	4 cut(s)	230, 344, 591, 813
Hpy8I	GTNNAC	3 cut(s)	61, 94, 872
Hpy99I	CGWCG	2 cut(s)	137, 252
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	9 cut(s)	45, 196, 220, 268, 317, 541, 553, 669, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 840
HpyF3I	CTNAG	4 cut(s)	290, 395, 613, 811
HpySE526I	ACGT	1 cut(s)	313
Hsp92I	GRCGYC	2 cut(s)	57, 581
Hsp92II	CATG	3 cut(s)	92, 118, 843
Kzo9I	GATC	7 cut(s)	129, 340, 568, 609, 689, 885, 889
LmnI	GCTCC	6 cut(s)	214, 326, 596, 655, 716, 815
Lsp1109I	GCAGC	3 cut(s)	7, 57, 204
LweI	GCATC	2 cut(s)	550, 656
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	313
MalI	GATC	7 cut(s)	131, 342, 570, 611, 691, 887, 891
MbiI	CCGCTC	3 cut(s)	26, 329, 818
MboI	GATC	7 cut(s)	129, 340, 568, 609, 689, 885, 889
MboII	GAAGA	1 cut(s)	350
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	2 cut(s)	706, 836
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	4 cut(s)	225, 258, 438, 805
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	253, 568
MmeI	TCCRAC	2 cut(s)	115, 583
Mox20I	TGGCCA	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	2 cut(s)	309, 411
MslI	CAYNNNNRTG	1 cut(s)	854
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	304, 755
MspCI	CTTAAG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	54, 840
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	7 cut(s)	129, 340, 568, 609, 689, 885, 889
NlaIII	CATG	3 cut(s)	92, 118, 843
NlaIV	GGNNCC	2 cut(s)	183, 724
NsiI	ATGCAT	1 cut(s)	543
NspI	RCATGY	1 cut(s)	843
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	22, 25, 47, 219
PleI	GAGTC	2 cut(s)	252, 567
PpsI	GAGTC	2 cut(s)	252, 567
PspFI	CCCAGC	1 cut(s)	496
PspN4I	GGNNCC	2 cut(s)	183, 724
PspPI	GGNCC	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	3 cut(s)	35, 113, 147
RsaNI	GTAC	3 cut(s)	34, 112, 146
RseI	CAYNNNNRTG	1 cut(s)	854
SaqAI	TTAA	2 cut(s)	309, 411
SatI	GCNGC	4 cut(s)	21, 24, 46, 218
Sau3AI	GATC	7 cut(s)	129, 340, 568, 609, 689, 885, 889
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	2 cut(s)	253, 568
SduI	GDGCHC	2 cut(s)	706, 836
SetI	ASST	9 cut(s)	22, 219, 282, 316, 324, 411, 498, 757, 828
SfaNI	GCATC	2 cut(s)	550, 656
SfcI	CTRYAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	854
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	225, 258, 438, 805
SsiI	CCGC	6 cut(s)	24, 304, 329, 446, 762, 818
SspI	AATATT	3 cut(s)	165, 238, 674
SspMI	CTAG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	749, 888
TasI	AATT	4 cut(s)	225, 258, 438, 805
TatI	WGTACW	2 cut(s)	33, 111
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	309, 411
Tru9I	TTAA	2 cut(s)	309, 411
TscAI	CASTG	3 cut(s)	198, 724, 856
TseI	GCWGC	3 cut(s)	20, 45, 217
TspDTI	ATGAA	2 cut(s)	351, 364
TspRI	CASTG	3 cut(s)	198, 724, 856
Vha464I	CTTAAG	1 cut(s)	410
XapI	RAATTY	2 cut(s)	225, 258
XceI	RCATGY	1 cut(s)	843
XspI	CTAG	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.