Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

31544622 .. 31548326

Gene Structure 3705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1245500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAGATTGCAGAGAGCTTACTGGTCTCTGAAGGGGCCTGAAACAGTGCAGGACTTTGCGACAATGGAGCTGCAGGAAATTCAAGATAATATTCGGAGTCGGCGCAACAAAATTTTCTTGCATACGGAGGAGGTTCGCAGGCTGAGGATACAACAGCGGATTAAACGGATTAAACGCGCAGAGCTTGGAGCGGTAAATGAAGATCAAGTTTTCCATCATTCATTCCATTTTTGCCTCCCCTGTTCAGACAACCTTAAGCAGTATTATGCTGTATGTTATTCAATTATTGCGGGGTTTATCCTTTTCGGTGGCCTCATAGCACCCTCCTTGGAGTTGAAGCTGGGAATAGGAGGCACATCGTATAAAGATTTTATAGTAAATATGCATCTGCCGTTGCAGTTGAGTCAAGTTGATCCCATAGTGGCATCGTTCTCTGGAGGAGCAGTCGGAGTGATCTCAGCATTGATGGTAGTTGAAATAAGCAATGTGAAACAGCAGGAGCATAAGCGATGCAAATATTGTCTTGGAACTGGATATCTTGCTTGTGCTCGTTGCTCCAGCACTGGAACCCTTGTTCTTACCGAACCAATTTCAACAGTTGATGGCGGAAACCAGCCCCTTTCACTGCCAAAAACTGAAAGATGTTCAAATTGCTCAGGAGCGGGAAAGGTAATGTGCCCTACATGCCTTTGCACTGGAATGGCGATGGCAAGTGAACACGACCCTCGGATCGACCCCTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

27.53

Weight (kDa)

8.43

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	191, 662
AccII	CGCG	1 cut(s)	177
AciI	CCGC	5 cut(s)	157, 191, 290, 606, 662
AclWI	GGATC	2 cut(s)	407, 737
AcsI	RAATTY	2 cut(s)	78, 111
AcuI	CTGAAG	1 cut(s)	50
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	6 cut(s)	83, 282, 337, 476, 594, 648
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	4 cut(s)	17, 70, 184, 340
AluI	AGCT	4 cut(s)	17, 70, 184, 340
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	2 cut(s)	407, 737
AoxI	GGCC	2 cut(s)	35, 310
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	2 cut(s)	78, 111
AspLEI	GCGC	2 cut(s)	105, 179
AspS9I	GGNCC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	550
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	4 cut(s)	222, 460, 596, 700
BceAI	ACGGC	1 cut(s)	376
BciVI	GTATCC	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	36, 568
BmsI	GCATC	3 cut(s)	394, 434, 500
BpmI	CTGGAG	2 cut(s)	456, 541
Bpu10I	CCTNAGC	2 cut(s)	143, 655
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	327, 725
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bse1I	ACTGG	4 cut(s)	26, 535, 568, 700
Bse3DI	GCAATG	1 cut(s)	490
BseDI	CCNNGG	2 cut(s)	327, 725
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	3 cut(s)	134, 471, 669
BseNI	ACTGG	4 cut(s)	26, 535, 568, 700
BseRI	GAGGAG	2 cut(s)	143, 453
BseSI	GKGCMC	1 cut(s)	680
BseXI	GCAGC	1 cut(s)	57
BseYI	CCCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	37, 312
BsiHKAI	GWGCWC	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	37, 312
Bso31I	GGTCTC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	550, 680
Bsp143I	GATC	4 cut(s)	202, 412, 453, 729
BspACI	CCGC	5 cut(s)	157, 191, 290, 606, 662
BspANI	GGCC	2 cut(s)	37, 312
BspCNI	CTCAG	3 cut(s)	135, 470, 668
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	36, 568
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	2 cut(s)	407, 737
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	30
BsrBI	CCGCTC	2 cut(s)	191, 662
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	4 cut(s)	26, 535, 568, 700
BssECI	CCNNGG	2 cut(s)	327, 725
BssMI	GATC	4 cut(s)	202, 412, 453, 729
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	46, 598
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	143, 457, 655
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	105, 179
BstKTI	GATC	4 cut(s)	205, 415, 456, 732
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	4 cut(s)	202, 412, 453, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	687
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	680
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	37, 312
BtgZI	GCGATG	2 cut(s)	523, 719
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	4 cut(s)	51, 561, 623, 693
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	2 cut(s)	105, 179
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	1 cut(s)	684
CviJI	RGCY	8 cut(s)	17, 37, 70, 142, 184, 312, 340, 616
CviKI_1	RGCY	8 cut(s)	17, 37, 70, 142, 184, 312, 340, 616
DdeI	CTNAG	3 cut(s)	143, 457, 655
DpnI	GATC	4 cut(s)	204, 414, 455, 731
DpnII	GATC	4 cut(s)	202, 412, 453, 729
EciI	GGCGGA	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	536
Eco57I	CTGAAG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	1 cut(s)	687
FatI	CATG	1 cut(s)	683
FauI	CCCGC	2 cut(s)	283, 655
Fnu4HI	GCNGC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	71
GlaI	GCGC	2 cut(s)	104, 178
GluI	GCNGC	1 cut(s)	71
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	2 cut(s)	456, 541
HaeIII	GGCC	2 cut(s)	37, 312
HhaI	GCGC	2 cut(s)	105, 179
Hin1II	CATG	1 cut(s)	687
Hin6I	GCGC	2 cut(s)	103, 177
HinP1I	GCGC	2 cut(s)	103, 177
HinfI	GANTC	2 cut(s)	97, 403
Hpy166II	GTNNAC	1 cut(s)	716
Hpy188I	TCNGA	5 cut(s)	30, 96, 247, 449, 729
Hpy188III	TCNNGA	3 cut(s)	83, 435, 657
Hpy8I	GTNNAC	1 cut(s)	716
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	46, 598
HpyCH4V	TGCA	8 cut(s)	10, 49, 73, 121, 385, 397, 513, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	684
HpyF3I	CTNAG	3 cut(s)	143, 457, 655
Hsp92II	CATG	1 cut(s)	687
HspAI	GCGC	2 cut(s)	103, 177
Kzo9I	GATC	4 cut(s)	202, 412, 453, 729
LmnI	GCTCC	6 cut(s)	67, 188, 440, 499, 560, 659
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	3 cut(s)	394, 434, 500
MalI	GATC	4 cut(s)	204, 414, 455, 731
MbiI	CCGCTC	2 cut(s)	191, 662
MboI	GATC	4 cut(s)	202, 412, 453, 729
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	550, 680
MluCI	AATT	5 cut(s)	78, 111, 282, 588, 649
MlyI	GAGTC	2 cut(s)	106, 412
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	9 cut(s)	121, 124, 138, 245, 323, 334, 344, 431, 735
Mph1103I	ATGCAT	1 cut(s)	387
MseI	TTAA	3 cut(s)	162, 171, 255
MslI	CAYNNNNRTG	1 cut(s)	698
MspA1I	CMGCKG	1 cut(s)	157
MspCI	CTTAAG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	684
NdeII	GATC	4 cut(s)	202, 412, 453, 729
NlaIII	CATG	1 cut(s)	687
NlaIV	GGNNCC	2 cut(s)	36, 568
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	687
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	2 cut(s)	105, 411
PpsI	GAGTC	2 cut(s)	105, 411
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	36, 568
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	3 cut(s)	162, 171, 255
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	4 cut(s)	202, 412, 453, 729
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	2 cut(s)	106, 412
SduI	GDGCHC	2 cut(s)	550, 680
SetI	ASST	7 cut(s)	19, 72, 135, 186, 255, 342, 672
SfaNI	GCATC	3 cut(s)	394, 434, 500
SfcI	CTRYAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	78, 111, 282, 588, 649
SsiI	CCGC	5 cut(s)	157, 191, 290, 606, 662
SspI	AATATT	2 cut(s)	91, 518
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	46, 598
TaqI	TCGA	1 cut(s)	732
TasI	AATT	5 cut(s)	78, 111, 282, 588, 649
Tru1I	TTAA	3 cut(s)	162, 171, 255
Tru9I	TTAA	3 cut(s)	162, 171, 255
TscAI	CASTG	4 cut(s)	51, 568, 630, 700
TseI	GCWGC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	210, 213
TspGWI	ACGGA	2 cut(s)	140, 181
TspRI	CASTG	4 cut(s)	51, 568, 630, 700
Vha464I	CTTAAG	1 cut(s)	254
XapI	RAATTY	2 cut(s)	78, 111
XceI	RCATGY	1 cut(s)	687
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.