Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

60270810 .. 60274774

Gene Structure 3965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG381200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCTCTCGCTCTCTTTGGGTCGATTGGTTGCGGTTTCACCTATAATAAATCGCTATGGATCGTATAGTTTGCATAGCTACAGCTCCAGATTTAACCAGAAATCAAGCTTCAGATTGCGATCGATGGCGCCCGAGTCTGACCCTTCTTCTTTTGCTCAATCTGTGGATTCTGATTCAGCTGAAACAAACCCTGCTGGATTCTGTATTATAGAGGGGCCGGAAACAGTGCAAGACTTTGCCAAAATGGAACTGCAAGAGATTCAGGATAATATTCGGAGTCGTCGCAACAAAATTTTCTTGCATATGGAAGAGGTTCGCAGGCTGAGGATACAACAGAGGATTAAAAACGCAGAGCTCGGAATGTCAAGTGAAGAGCAAGAAAATGAACTTCCGAACTTTCCATCATTCATTCCATTCTTGCCTCCCTTGACTTCAGCAAACCTTAAGCAGTATTATGCTGTTTGTTTTTCTCTTATTGCGGGAATCATCCTTTTCGGTGGCCTCCTAGCACCCACTTTAGAGTTGAGGCTGGGAATAGGAGGCACATCATATGAAGACTTCATAACTAGTATGCATCTGCCTATGCAGTTGAGTGAAGTTGATCCCATAGTTGCATCCTTCTCGGGAGGAGCAGTTGGAGTGATCTCCTCACTGATGGTAGTTGAAATAAACAATGTAAAACTGCAGGAGGATAAGAGATGCAAGTATTGTCTTGGAACTGGTATGACCTTTGAGTTCTTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.64

Weight (kDa)

5.34

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AciI	CCGC	2 cut(s)	32, 479
AclWI	GGATC	2 cut(s)	67, 596
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	2 cut(s)	94, 417
AcyI	GRCGYC	1 cut(s)	128
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	665
AhlI	ACTAGT	1 cut(s)	566
AluBI	AGCT	5 cut(s)	78, 84, 108, 179, 355
AluI	AGCT	5 cut(s)	78, 84, 108, 179, 355
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	2 cut(s)	67, 596
Ama87I	CYCGRG	2 cut(s)	131, 622
AoxI	GGCC	2 cut(s)	215, 499
ApoI	RAATTY	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	30
AvaI	CYCGRG	2 cut(s)	131, 622
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	357
BbvCI	CCTCAGC	1 cut(s)	323
BccI	CCATC	3 cut(s)	118, 409, 649
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciVI	GTATCC	1 cut(s)	321
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	2 cut(s)	506, 567
BfmI	CTRYAG	2 cut(s)	79, 683
BfoI	RGCGCY	1 cut(s)	131
BfrI	CTTAAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	321
BmeT110I	CYCGRG	2 cut(s)	131, 622
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	129, 216
BmsI	GCATC	3 cut(s)	583, 623, 689
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bse1I	ACTGG	1 cut(s)	724
Bse8I	GATNNNNATC	1 cut(s)	118
BseCI	ATCGAT	1 cut(s)	122
BseGI	GGATG	2 cut(s)	486, 614
BseJI	GATNNNNATC	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	2 cut(s)	637, 642
BseYI	CCCAGC	1 cut(s)	529
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	217, 501
BshNI	GGYRCC	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	2 cut(s)	131, 622
BsiSI	CCGG	1 cut(s)	218
BsnI	GGCC	2 cut(s)	217, 501
BsoBI	CYCGRG	2 cut(s)	131, 622
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	59, 119, 601, 642
BspACI	CCGC	2 cut(s)	32, 479
BspANI	GGCC	2 cut(s)	217, 501
BspCNI	CTCAG	1 cut(s)	315
BspDI	ATCGAT	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	129, 216
BspMAI	CTGCAG	1 cut(s)	687
BspPI	GGATC	2 cut(s)	67, 596
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	127
BspTI	CTTAAG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	724
BssMI	GATC	4 cut(s)	59, 119, 601, 642
BssNI	GRCGYC	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	2 cut(s)	303, 366
BstACI	GRCGYC	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	486, 614
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	4 cut(s)	62, 122, 604, 645
BstMBI	GATC	4 cut(s)	59, 119, 601, 642
BstMCI	CGRYCG	1 cut(s)	122
BstSFI	CTRYAG	2 cut(s)	79, 683
BstV2I	GAAGAC	1 cut(s)	561
Bsu15I	ATCGAT	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	217, 501
BsuTUI	ATCGAT	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	486, 614
BtsIMutI	CAGTG	2 cut(s)	231, 650
Cac8I	GCNNGC	1 cut(s)	320
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	215
ClaI	ATCGAT	1 cut(s)	122
CviJI	RGCY	9 cut(s)	78, 84, 108, 179, 217, 322, 355, 501, 529
CviKI_1	RGCY	9 cut(s)	78, 84, 108, 179, 217, 322, 355, 501, 529
DdeI	CTNAG	1 cut(s)	323
DinI	GGCGCC	1 cut(s)	129
DpnI	GATC	4 cut(s)	61, 121, 603, 644
DpnII	GATC	4 cut(s)	59, 119, 601, 642
Eam1104I	CTCTTC	2 cut(s)	303, 366
EarI	CTCTTC	2 cut(s)	303, 366
Ecl136II	GAGCTC	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	94, 417
Eco88I	CYCGRG	2 cut(s)	131, 622
EcoICRI	GAGCTC	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	357
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
FauI	CCCGC	1 cut(s)	472
FauNDI	CATATG	2 cut(s)	303, 550
FokI	GGATG	2 cut(s)	473, 601
FriOI	GRGCYC	1 cut(s)	357
FspBI	CTAG	2 cut(s)	506, 567
GlaI	GCGC	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	217, 501
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	7 cut(s)	134, 167, 173, 198, 259, 277, 483
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	30
Hpy188I	TCNGA	6 cut(s)	113, 139, 172, 276, 359, 393
Hpy188III	TCNNGA	3 cut(s)	87, 263, 624
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	153, 628
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	9 cut(s)	73, 229, 253, 301, 574, 586, 614, 685, 702
HpyF3I	CTNAG	1 cut(s)	323
Hsp92I	GRCGYC	1 cut(s)	128
HspAI	GCGC	1 cut(s)	128
KasI	GGCGCC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	59, 119, 601, 642
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	89, 629
LweI	GCATC	3 cut(s)	583, 623, 689
MaeI	CTAG	2 cut(s)	506, 567
MalI	GATC	4 cut(s)	61, 121, 603, 644
MboI	GATC	4 cut(s)	59, 119, 601, 642
MboII	GAAGA	4 cut(s)	138, 320, 383, 566
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	1 cut(s)	291
Mly113I	GGCGCC	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	143, 286
MmeI	TCCRAC	1 cut(s)	616
Mph1103I	ATGCAT	1 cut(s)	576
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	3 cut(s)	93, 342, 444
MspA1I	CMGCKG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	128
NdeI	CATATG	2 cut(s)	303, 550
NdeII	GATC	4 cut(s)	59, 119, 601, 642
NlaIV	GGNNCC	2 cut(s)	129, 216
NsiI	ATGCAT	1 cut(s)	576
PciSI	GCTCTTC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	5 cut(s)	167, 173, 198, 259, 483
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	2 cut(s)	142, 285
PluTI	GGCGCC	1 cut(s)	131
PpsI	GAGTC	2 cut(s)	142, 285
Psp124BI	GAGCTC	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	129, 216
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	687
PvuI	CGATCG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	357
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	93, 342, 444
Sau3AI	GATC	4 cut(s)	59, 119, 601, 642
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	2 cut(s)	143, 286
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	9 cut(s)	43, 80, 86, 110, 181, 315, 357, 444, 731
SfaNI	GCATC	3 cut(s)	583, 623, 689
SfcI	CTRYAG	2 cut(s)	79, 683
SfoI	GGCGCC	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	2 cut(s)	32, 479
SspDI	GGCGCC	1 cut(s)	127
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	506, 567
SstI	GAGCTC	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	22, 122
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	5 cut(s)	167, 173, 198, 259, 483
Tru1I	TTAA	3 cut(s)	93, 342, 444
Tru9I	TTAA	3 cut(s)	93, 342, 444
TscAI	CASTG	2 cut(s)	231, 657
TspDTI	ATGAA	4 cut(s)	397, 399, 550, 567
TspRI	CASTG	2 cut(s)	231, 657
Vha464I	CTTAAG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	506, 567
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.