Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

17541393 .. 17543987

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCTCTGTTCCGGCCGACTTTTGGCCGTTTCCTTCCCGCTAAATCGGTACTGCCCGTACAAATTGCATAGCTCTAGCTGCTCCGGATTCAGCTACGCAAGAAGCCCCAAATCAACAAGCAGCTCCAAATGGAGATCCATGGCGATGGCGTCCGACCCCGACTCCTCCTCTTTCGGTCCCTCTGTCGACTCTGATCCTAATCCCGCCGCCGATACCAACCCAGCCGGATTTTGTATCATAGAGGGGCCTGAAATGGTGCAGGACTTTGCCAAAATGGAGTTGCAGGAGATCAAAGAGAATATTCGAAGCCGACGAAACAAGATTTTCTTGCATATGGAAGAGGTTCGCAGGCTGCGGATACAACAAAGGATTAAAAGCGCAGAGCTTGGAACGTTAGACCAAGAAAACGAACTTCCTAGTTTTCCGTCTTTCATTCCATTTTTGCCTCCCCTGAGTTCAGACAACCTTAAGCAGTACTATGCTATCTGTTATTCAATTATTGCGGGGTTTATACTTTTCGGTGGCCTCATATCACCCTCTCTGGAGTTGAAGCTGGGGATAGGAGGCACATCATACAAAGATTTTATAGTAAATATGCATCTGCCGTTGCAGTTGAGCCAAGTTGATCCCATTGTGGCGTCGTTCTCAGGAGGAGCAGTCGGAGTGATCTCAGCATTGATGGTAGTTGAAATAAACAATGTGAAACAGCAGGAGCAAAAAAGATGTAAATATTGTGTTGGAACTGGATATCTTGCTTGTGCTCGCTGCTCAAGCACTGGAACCCTTGTTCTTACTGAACCAGTATCAACAGTTGATGGCAGAAGTCAGCCCCTCTCACTGCCTAAAACCGAAAGATGTTCGAACTGCTCAGGAGCGGGAAAGGTAATGTGTCCTACATGCCTTTGCACTGGAATGGCGATGGCAAGTGAACACGACCCTCGGATTGATCCCTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

34.8

Weight (kDa)

7.43

Isoelectric Point (pI)

60.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	875
AccI	GTMKAC	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	6 cut(s)	38, 204, 207, 355, 503, 875
AclI	AACGTT	1 cut(s)	392
AclWI	GGATC	4 cut(s)	129, 188, 620, 941
AcoI	YGGCCR	2 cut(s)	13, 24
AcyI	GRCGYC	2 cut(s)	149, 638
AfaI	GTAC	3 cut(s)	50, 59, 476
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	495, 550, 689
AloI	GAACNNNNNNTCC	2 cut(s)	771, 803
AluBI	AGCT	6 cut(s)	72, 78, 93, 123, 385, 553
AluI	AGCT	6 cut(s)	72, 78, 93, 123, 385, 553
Alw21I	GWGCWC	1 cut(s)	763
AlwI	GGATC	4 cut(s)	129, 188, 620, 941
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	4 cut(s)	13, 24, 245, 523
ApeKI	GCWGC	4 cut(s)	78, 120, 352, 765
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	176, 245
AsuHPI	GGTGA	1 cut(s)	525
AsuII	TTCGAA	2 cut(s)	304, 860
AvaII	GGWCC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	4 cut(s)	65, 132, 339, 752
BccI	CCATC	4 cut(s)	139, 673, 809, 913
BceAI	ACGGC	2 cut(s)	11, 589
BciVI	GTATCC	1 cut(s)	351
BfaI	CTAG	2 cut(s)	75, 417
BfrI	CTTAAG	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	5 cut(s)	79, 121, 207, 353, 766
BlsI	GCNGC	5 cut(s)	80, 122, 208, 354, 767
BmcAI	AGTACT	1 cut(s)	476
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	176, 245
BmiI	GGNNCC	3 cut(s)	178, 246, 781
BmsI	GCATC	1 cut(s)	607
BpmI	CTGGAG	1 cut(s)	563
Bpu10I	CCTNAGC	1 cut(s)	868
Bpu14I	TTCGAA	2 cut(s)	304, 860
BpuEI	CTTGAG	1 cut(s)	754
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	2 cut(s)	149, 638
BsaJI	CCNNGG	2 cut(s)	138, 938
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	4 cut(s)	748, 781, 800, 913
Bse8I	GATNNNNATC	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	138, 938
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	4 cut(s)	443, 660, 684, 882
BseNI	ACTGG	4 cut(s)	748, 781, 800, 913
BseRI	GAGGAG	3 cut(s)	154, 157, 666
BseX3I	CGGCCG	1 cut(s)	13
BseXI	GCAGC	4 cut(s)	65, 132, 339, 752
BseYI	CCCAGC	2 cut(s)	220, 553
BsgI	GTGCAG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	4 cut(s)	15, 26, 247, 525
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	763
BsiSI	CCGG	3 cut(s)	12, 84, 225
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	4 cut(s)	15, 26, 247, 525
Bsp119I	TTCGAA	2 cut(s)	304, 860
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	6 cut(s)	134, 193, 288, 625, 666, 946
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	6 cut(s)	38, 204, 207, 355, 503, 875
BspANI	GGCC	4 cut(s)	15, 26, 247, 525
BspCNI	CTCAG	4 cut(s)	444, 659, 683, 881
BspEI	TCCGGA	1 cut(s)	83
BspLI	GGNNCC	3 cut(s)	178, 246, 781
BspPI	GGATC	4 cut(s)	129, 188, 620, 941
BspT104I	TTCGAA	2 cut(s)	304, 860
BspTI	CTTAAG	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	875
BsrI	ACTGG	4 cut(s)	748, 781, 800, 913
BssECI	CCNNGG	2 cut(s)	138, 938
BssMI	GATC	6 cut(s)	134, 193, 288, 625, 666, 946
BssNI	GRCGYC	2 cut(s)	149, 638
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	811
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	2 cut(s)	149, 638
BstAFI	CTTAAG	1 cut(s)	467
BstBI	TTCGAA	2 cut(s)	304, 860
BstC8I	GCNNGC	2 cut(s)	350, 763
BstDEI	CTNAG	4 cut(s)	452, 646, 670, 868
BstDSI	CCRYGG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	6 cut(s)	137, 196, 291, 628, 669, 949
BstMBI	GATC	6 cut(s)	134, 193, 288, 625, 666, 946
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 771
BstNSI	RCATGY	1 cut(s)	900
BstV1I	GCAGC	4 cut(s)	65, 132, 339, 752
BstX2I	RGATCY	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	134
BstZI	CGGCCG	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	15, 26, 247, 525
BtgI	CCRYGG	1 cut(s)	138
BtgZI	GCGATG	2 cut(s)	158, 932
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	3 cut(s)	774, 836, 906
Cac8I	GCNNGC	2 cut(s)	350, 763
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	176, 245
CseI	GACGC	2 cut(s)	138, 627
Csp6I	GTAC	3 cut(s)	49, 58, 475
CviAII	CATG	2 cut(s)	139, 897
CviQI	GTAC	3 cut(s)	49, 58, 475
DdeI	CTNAG	4 cut(s)	452, 646, 670, 868
DpnI	GATC	6 cut(s)	136, 195, 290, 627, 668, 948
DpnII	GATC	6 cut(s)	134, 193, 288, 625, 666, 946
EaeI	YGGCCR	2 cut(s)	13, 24
EagI	CGGCCG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EclXI	CGGCCG	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	176
Eco52I	CGGCCG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRV	GATATC	1 cut(s)	749
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	142, 900
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	2 cut(s)	138, 896
FauI	CCCGC	4 cut(s)	45, 211, 496, 868
FauNDI	CATATG	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	79, 121, 207, 353, 766
Fsp4HI	GCNGC	5 cut(s)	79, 121, 207, 353, 766
FspBI	CTAG	2 cut(s)	75, 417
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	5 cut(s)	79, 121, 207, 353, 766
GsaI	CCCAGC	2 cut(s)	224, 557
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	4 cut(s)	15, 26, 247, 525
HapII	CCGG	3 cut(s)	12, 84, 225
HgaI	GACGC	2 cut(s)	138, 627
HhaI	GCGC	1 cut(s)	380
Hin1I	GRCGYC	2 cut(s)	149, 638
Hin1II	CATG	2 cut(s)	142, 900
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	87, 161, 188
HpaII	CCGG	3 cut(s)	12, 84, 225
HphI	GGTGA	1 cut(s)	525
Hpy166II	GTNNAC	2 cut(s)	187, 929
Hpy188I	TCNGA	5 cut(s)	154, 193, 460, 662, 942
Hpy188III	TCNNGA	4 cut(s)	84, 542, 648, 870
Hpy8I	GTNNAC	2 cut(s)	187, 929
Hpy99I	CGWCG	2 cut(s)	315, 643
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	811
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	7 cut(s)	67, 259, 283, 331, 598, 610, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 771
HpyF3I	CTNAG	4 cut(s)	452, 646, 670, 868
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	2 cut(s)	149, 638
Hsp92II	CATG	2 cut(s)	142, 900
HspAI	GCGC	1 cut(s)	378
Kpn2I	TCCGGA	1 cut(s)	83
Kzo9I	GATC	6 cut(s)	134, 193, 288, 625, 666, 946
LmnI	GCTCC	5 cut(s)	86, 128, 653, 712, 872
Lsp1109I	GCAGC	4 cut(s)	65, 132, 339, 752
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	75, 417
MaeII	ACGT	1 cut(s)	392
MalI	GATC	6 cut(s)	136, 195, 290, 627, 668, 948
MbiI	CCGCTC	1 cut(s)	875
MboI	GATC	6 cut(s)	134, 193, 288, 625, 666, 946
MboII	GAAGA	1 cut(s)	350
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	2 cut(s)	62, 495
MlyI	GAGTC	2 cut(s)	155, 182
MmeI	TCCRAC	3 cut(s)	177, 640, 718
Mph1103I	ATGCAT	1 cut(s)	600
MroI	TCCGGA	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	2 cut(s)	372, 468
MslI	CAYNNNNRTG	2 cut(s)	143, 911
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	3 cut(s)	12, 84, 225
MwoI	GCNNNNNNNGC	2 cut(s)	78, 771
NcoI	CCATGG	1 cut(s)	138
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	6 cut(s)	134, 193, 288, 625, 666, 946
NlaIII	CATG	2 cut(s)	142, 900
NlaIV	GGNNCC	3 cut(s)	178, 246, 781
NsiI	ATGCAT	1 cut(s)	600
NspI	RCATGY	1 cut(s)	900
NspV	TTCGAA	2 cut(s)	304, 860
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	5 cut(s)	80, 122, 208, 354, 767
PleI	GAGTC	2 cut(s)	155, 182
PpsI	GAGTC	2 cut(s)	155, 182
Psp1406I	AACGTT	1 cut(s)	392
PspFI	CCCAGC	2 cut(s)	220, 553
PspN4I	GGNNCC	3 cut(s)	178, 246, 781
PspPI	GGNCC	2 cut(s)	176, 245
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	3 cut(s)	50, 59, 476
RsaNI	GTAC	3 cut(s)	49, 58, 475
RseI	CAYNNNNRTG	2 cut(s)	143, 911
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	372, 468
SatI	GCNGC	5 cut(s)	79, 121, 207, 353, 766
Sau3AI	GATC	6 cut(s)	134, 193, 288, 625, 666, 946
Sau96I	GGNCC	2 cut(s)	176, 245
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	2 cut(s)	155, 182
SduI	GDGCHC	1 cut(s)	763
SfaNI	GCATC	1 cut(s)	607
SfuI	TTCGAA	2 cut(s)	304, 860
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	143, 911
SmlI	CTYRAG	2 cut(s)	467, 769
SmoI	CTYRAG	2 cut(s)	467, 769
Sse9I	AATT	2 cut(s)	62, 495
SsiI	CCGC	6 cut(s)	38, 204, 207, 355, 503, 875
SspI	AATATT	2 cut(s)	301, 731
SspMI	CTAG	2 cut(s)	75, 417
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	811
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	4 cut(s)	186, 304, 860, 954
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	62, 495
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	372, 468
Tru9I	TTAA	2 cut(s)	372, 468
TscAI	CASTG	3 cut(s)	781, 843, 913
TseI	GCWGC	4 cut(s)	78, 120, 352, 765
TspDTI	ATGAA	1 cut(s)	421
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	3 cut(s)	781, 843, 913
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	176
XceI	RCATGY	1 cut(s)	900
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	2 cut(s)	75, 417
ZrmI	AGTACT	1 cut(s)	476
Zsp2I	ATGCAT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.