Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

27661740 .. 27664891

Gene Structure 3152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1175600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCTCTGTTCCGGCCGACTTTTGGCCGTTTCTTTCCCGCCGAATCGTTACTGCCCGTACAAATTGCATAGCTCTAGCTGCTCCGGATTCAGCTACGCAAGAAGCCCCAAATCAAGCACCTCCAAATGGAGATCCATGGCGATGGCGTCCGACCCCGATTCCTCTTCTTTCGGTCCGTCTGTCGACTCTGATCCTAATCCCGCCGGCGATACAAACCCCGCCGGATTTTGTATTATAGAGGGGCCTGAAATGGTGCAGGACTTTGCCAAAATGGAGTTGCAGGAGATCAAAGATAATATTCGAAGCCGACGAAACAAGATTTTCTTGCATATGGAAGAGGTTCGCAGGCTGCGGATACAACAAAGGATCAAAAGCGCAGAGCTTGGAACGTTAGACCAAGAAAACGAACTTCCTAGTTTTCCGTCTTTCATTCCATTTTTGCCTCCCCTGAGTTCAGAAAACCTTAAGCAGTATTATGCAGTCTGTTATTCAATTATTGCGGGATTTATACTTTTCGGTGGCCTCATATCACCCTCTCTGGAGTTGAAGCTGGGGATAGGAGGCACATCATATAAAGATTTTATAGTAAATATGCATCTGCCGTTGCAGTTGAGCCAAGTTGATCCCATCGTGGCGTCATTCTCAGGAGGAGCAGTTGGAGTGATCTCAGCATTGATGGTAGTTGAAATAAACAATGTGAAACAGCAGGAGCAAAAAAGATGCAAATATTGTATTGGAACTGGATATCTTGCTTGTGCTCGCTGCTCAAGCACTGGAACCCTTGTTCTTACTGAACCAGTATCAACAGTTGATGGCAGAAGTCAGCCCCTCTCACTGCCTAAAACCGAAAGATGTTCAAACTGCTCTGGAGCGGGAAAGGTAATGTGCCCTACATGCCTTTGCACTGGAATGGCGATGGCAAGTGAACACGACCCTCGGATCGATCCCTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

34.68

Weight (kDa)

7.43

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	872
AccI	GTMKAC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	6 cut(s)	38, 201, 219, 352, 500, 872
AclI	AACGTT	1 cut(s)	389
AclWI	GGATC	6 cut(s)	126, 185, 374, 617, 938, 947
AcoI	YGGCCR	2 cut(s)	13, 24
AcyI	GRCGYC	2 cut(s)	146, 635
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	22, 126
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	492, 547, 686, 858
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
AluBI	AGCT	5 cut(s)	72, 78, 93, 382, 550
AluI	AGCT	5 cut(s)	72, 78, 93, 382, 550
Alw21I	GWGCWC	1 cut(s)	760
AlwI	GGATC	6 cut(s)	126, 185, 374, 617, 938, 947
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	4 cut(s)	13, 24, 242, 520
ApeKI	GCWGC	3 cut(s)	78, 349, 762
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	173, 242
AsuHPI	GGTGA	1 cut(s)	522
AsuII	TTCGAA	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	890
Bbv12I	GWGCWC	1 cut(s)	760
BbvI	GCAGC	3 cut(s)	65, 336, 749
BccI	CCATC	5 cut(s)	136, 635, 670, 806, 910
BceAI	ACGGC	2 cut(s)	11, 586
BciVI	GTATCC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	75, 414
BfrI	CTTAAG	1 cut(s)	464
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	3 cut(s)	79, 350, 763
BlsI	GCNGC	3 cut(s)	80, 351, 764
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	173, 242
BmiI	GGNNCC	2 cut(s)	243, 778
BmsI	GCATC	2 cut(s)	604, 710
BpmI	CTGGAG	2 cut(s)	560, 888
Bpu14I	TTCGAA	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	751
Bsa29I	ATCGAT	1 cut(s)	942
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	146, 635
BsaJI	CCNNGG	2 cut(s)	135, 935
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 126
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	4 cut(s)	745, 778, 797, 910
Bse8I	GATNNNNATC	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	942
BseDI	CCNNGG	2 cut(s)	135, 935
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	22, 126
BseMII	CTCAG	3 cut(s)	440, 657, 681
BseNI	ACTGG	4 cut(s)	745, 778, 797, 910
BseRI	GAGGAG	1 cut(s)	663
BseSI	GKGCMC	1 cut(s)	890
BseX3I	CGGCCG	1 cut(s)	13
BseXI	GCAGC	3 cut(s)	65, 336, 749
BseYI	CCCAGC	1 cut(s)	550
BsgI	GTGCAG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	4 cut(s)	15, 26, 244, 522
BshVI	ATCGAT	1 cut(s)	942
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	4 cut(s)	12, 84, 204, 222
BslI	CCNNNNNNNGG	2 cut(s)	22, 126
BsnI	GGCC	4 cut(s)	15, 26, 244, 522
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	760, 890
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	8 cut(s)	131, 190, 285, 366, 622, 663, 939, 943
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	6 cut(s)	38, 201, 219, 352, 500, 872
BspANI	GGCC	4 cut(s)	15, 26, 244, 522
BspCNI	CTCAG	3 cut(s)	441, 656, 680
BspDI	ATCGAT	1 cut(s)	942
BspEI	TCCGGA	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	243, 778
BspPI	GGATC	6 cut(s)	126, 185, 374, 617, 938, 947
BspT104I	TTCGAA	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	872
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	4 cut(s)	745, 778, 797, 910
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	135, 935
BssMI	GATC	8 cut(s)	131, 190, 285, 366, 622, 663, 939, 943
BssNI	GRCGYC	2 cut(s)	146, 635
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	808
Bst6I	CTCTTC	2 cut(s)	169, 330
BstACI	GRCGYC	2 cut(s)	146, 635
BstAFI	CTTAAG	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	3 cut(s)	205, 347, 760
BstDEI	CTNAG	3 cut(s)	449, 643, 667
BstDSI	CCRYGG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	8 cut(s)	134, 193, 288, 369, 625, 666, 942, 946
BstMBI	GATC	8 cut(s)	131, 190, 285, 366, 622, 663, 939, 943
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 768, 894
BstNSI	RCATGY	1 cut(s)	897
BstSLI	GKGCMC	1 cut(s)	890
BstV1I	GCAGC	3 cut(s)	65, 336, 749
BstX2I	RGATCY	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	131
BstZI	CGGCCG	1 cut(s)	13
Bsu15I	ATCGAT	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	15, 26, 244, 522
BsuTUI	ATCGAT	1 cut(s)	942
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	2 cut(s)	155, 929
BtsI	GCAGTG	1 cut(s)	833
BtsIMutI	CAGTG	3 cut(s)	771, 833, 903
Cac8I	GCNNGC	3 cut(s)	205, 347, 760
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	173, 242
ClaI	ATCGAT	1 cut(s)	942
CpoI	CGGWCCG	1 cut(s)	173
CseI	GACGC	2 cut(s)	135, 624
Csp6I	GTAC	1 cut(s)	58
CspI	CGGWCCG	1 cut(s)	173
CviAII	CATG	2 cut(s)	136, 894
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	3 cut(s)	449, 643, 667
DpnI	GATC	8 cut(s)	133, 192, 287, 368, 624, 665, 941, 945
DpnII	GATC	8 cut(s)	131, 190, 285, 366, 622, 663, 939, 943
EaeI	YGGCCR	2 cut(s)	13, 24
EagI	CGGCCG	1 cut(s)	13
Eam1104I	CTCTTC	2 cut(s)	169, 330
EarI	CTCTTC	2 cut(s)	169, 330
EclXI	CGGCCG	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	746
Eco47I	GGWCC	1 cut(s)	173
Eco52I	CGGCCG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	746
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 897
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	2 cut(s)	135, 893
FauI	CCCGC	5 cut(s)	45, 208, 226, 493, 865
FauNDI	CATATG	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	79, 350, 763
Fsp4HI	GCNGC	3 cut(s)	79, 350, 763
FspBI	CTAG	2 cut(s)	75, 414
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	3 cut(s)	79, 350, 763
GsaI	CCCAGC	1 cut(s)	554
GsuI	CTGGAG	2 cut(s)	560, 888
HaeIII	GGCC	4 cut(s)	15, 26, 244, 522
HapII	CCGG	4 cut(s)	12, 84, 204, 222
HgaI	GACGC	2 cut(s)	135, 624
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	2 cut(s)	146, 635
Hin1II	CATG	2 cut(s)	139, 897
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	4 cut(s)	43, 87, 158, 185
HpaII	CCGG	4 cut(s)	12, 84, 204, 222
HphI	GGTGA	1 cut(s)	522
Hpy166II	GTNNAC	2 cut(s)	184, 926
Hpy188I	TCNGA	4 cut(s)	151, 190, 457, 939
Hpy188III	TCNNGA	4 cut(s)	84, 539, 645, 867
Hpy8I	GTNNAC	2 cut(s)	184, 926
Hpy99I	CGWCG	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	9 cut(s)	67, 256, 280, 328, 479, 595, 607, 723, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 768, 894
HpyF3I	CTNAG	3 cut(s)	449, 643, 667
HpySE526I	ACGT	1 cut(s)	389
Hsp92I	GRCGYC	2 cut(s)	146, 635
Hsp92II	CATG	2 cut(s)	139, 897
HspAI	GCGC	1 cut(s)	375
Kpn2I	TCCGGA	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Kzo9I	GATC	8 cut(s)	131, 190, 285, 366, 622, 663, 939, 943
LmnI	GCTCC	4 cut(s)	86, 650, 709, 869
Lsp1109I	GCAGC	3 cut(s)	65, 336, 749
LweI	GCATC	2 cut(s)	604, 710
MaeI	CTAG	2 cut(s)	75, 414
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	8 cut(s)	133, 192, 287, 368, 624, 665, 941, 945
MbiI	CCGCTC	1 cut(s)	872
MboI	GATC	8 cut(s)	131, 190, 285, 366, 622, 663, 939, 943
MboII	GAAGA	2 cut(s)	156, 347
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	2 cut(s)	760, 890
MluCI	AATT	2 cut(s)	62, 492
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	174, 637
Mph1103I	ATGCAT	1 cut(s)	597
MreI	CGCCGGCG	1 cut(s)	203
MroI	TCCGGA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	2 cut(s)	140, 908
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	4 cut(s)	12, 84, 204, 222
MwoI	GCNNNNNNNGC	3 cut(s)	78, 768, 894
NaeI	GCCGGC	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	8 cut(s)	131, 190, 285, 366, 622, 663, 939, 943
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	2 cut(s)	139, 897
NlaIV	GGNNCC	2 cut(s)	243, 778
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	1 cut(s)	897
NspV	TTCGAA	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	43, 87, 158
PkrI	GCNGC	3 cut(s)	80, 351, 764
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	243, 778
PspPI	GGNCC	2 cut(s)	173, 242
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	140, 908
Rsr2I	CGGWCCG	1 cut(s)	173
RsrII	CGGWCCG	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	3 cut(s)	79, 350, 763
Sau3AI	GATC	8 cut(s)	131, 190, 285, 366, 622, 663, 939, 943
Sau96I	GGNCC	2 cut(s)	173, 242
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	760, 890
SfaNI	GCATC	2 cut(s)	604, 710
SfuI	TTCGAA	1 cut(s)	301
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	140, 908
SmlI	CTYRAG	2 cut(s)	464, 766
SmoI	CTYRAG	2 cut(s)	464, 766
Sse9I	AATT	2 cut(s)	62, 492
SsiI	CCGC	6 cut(s)	38, 201, 219, 352, 500, 872
SspI	AATATT	2 cut(s)	298, 728
SspMI	CTAG	2 cut(s)	75, 414
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	808
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	3 cut(s)	183, 301, 942
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	2 cut(s)	62, 492
TfiI	GAWTC	3 cut(s)	43, 87, 158
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	3 cut(s)	778, 840, 910
TseI	GCWGC	3 cut(s)	78, 349, 762
TspDTI	ATGAA	1 cut(s)	418
TspGWI	ACGGA	2 cut(s)	165, 411
TspRI	CASTG	3 cut(s)	778, 840, 910
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	173
XceI	RCATGY	1 cut(s)	897
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	2 cut(s)	75, 414
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.