Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000435.1

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

31741 .. 34045

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000435.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgtgcagattctgtattatagaggggccggaaacagtgcaagactttgccaaaatggaactgcaagagattcaggataatattcggagtcgtcgcaacaaaattttcttgcatatggaagaggttcgcaggctgaggatacaacagaggattaaaaacgcagagctcggaatgtcaagtgaagagcaagaaaatgaacttccgaactttccatcattcattccattcttgcctcccttgacttcagcaaaccttaagcagtattatgctgtttgtttttctcttattgcgggaatcatccttttcggtggcctcctagcacccactttagagttgaggctgggaataggaggcacatcatatgaagacttcataactagtatgcatctgcctatgcagttgagtgaagttgatcccatagttgcatccttctcgggaggagcagttggagtgatctcctcactgatggtagttgaaataaacaatgtaaaactgcaggaggataagagatgcaaatattgtcttggaactggatatcttgcttgtgctcggtgttcaagcacaggaacccttgtgcttgctgaagcagtatcaaccattgatggtggagaacagcctttatcactacctaaaaccgaaagatgttcaaactgctcaggatccggaaaggttatgtgccctacatgcctttgcactgggatggccatggcaagcgagcatgaccctcgaatcgatccctttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.27

Weight (kDa)

5.13

Isoelectric Point (pI)

60.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	662
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	4 cut(s)	407, 654, 667, 728
AcoI	YGGCCR	1 cut(s)	702
AcsI	RAATTY	1 cut(s)	102
AcuI	CTGAAG	2 cut(s)	228, 603
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	476, 558, 648
AhlI	ACTAGT	1 cut(s)	377
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	2 cut(s)	168, 550
AlwI	GGATC	4 cut(s)	407, 654, 667, 728
AlwNI	CAGNNNCTG	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	662
AoxI	GGCC	3 cut(s)	26, 310, 702
ApoI	RAATTY	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	680
BalI	TGGCCA	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	168, 550
BbvCI	CCTCAGC	1 cut(s)	134
BccI	CCATC	4 cut(s)	220, 460, 596, 694
BcgI	CGANNNNNNTGC	4 cut(s)	414, 448, 707, 741
BciVI	GTATCC	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	317, 378
BfmI	CTRYAG	1 cut(s)	494
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	27, 568, 661
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	3 cut(s)	394, 434, 500
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	372
Bpu10I	CCTNAGC	2 cut(s)	134, 655
Bsa29I	ATCGAT	1 cut(s)	732
BsaJI	CCNNGG	1 cut(s)	705
BsaWI	WCCGGW	1 cut(s)	662
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bse1I	ACTGG	2 cut(s)	535, 700
BseAI	TCCGGA	1 cut(s)	662
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	1 cut(s)	705
BseGI	GGATG	3 cut(s)	297, 425, 705
BseMII	CTCAG	2 cut(s)	125, 669
BseNI	ACTGG	2 cut(s)	535, 700
BseRI	GAGGAG	2 cut(s)	448, 453
BseSI	GKGCMC	1 cut(s)	680
BseYI	CCCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	28, 312, 704
BshVI	ATCGAT	1 cut(s)	732
BsiHKAI	GWGCWC	2 cut(s)	168, 550
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	29, 663
BsnI	GGCC	3 cut(s)	28, 312, 704
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	168, 550, 680
Bsp13I	TCCGGA	1 cut(s)	662
Bsp143I	GATC	4 cut(s)	412, 453, 659, 733
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	3 cut(s)	28, 312, 704
BspCNI	CTCAG	2 cut(s)	126, 668
BspDI	ATCGAT	1 cut(s)	732
BspEI	TCCGGA	1 cut(s)	662
BspLI	GGNNCC	3 cut(s)	27, 568, 661
BspMAI	CTGCAG	1 cut(s)	498
BspPI	GGATC	4 cut(s)	407, 654, 667, 728
BspQI	GCTCTTC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	535, 700
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	4 cut(s)	412, 453, 659, 733
BssT1I	CCWWGG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	114, 177
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	131, 579, 712, 716
BstDEI	CTNAG	2 cut(s)	134, 655
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	3 cut(s)	297, 425, 705
BstKTI	GATC	4 cut(s)	415, 456, 662, 736
BstMBI	GATC	4 cut(s)	412, 453, 659, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	687
BstSFI	CTRYAG	1 cut(s)	494
BstSLI	GKGCMC	1 cut(s)	680
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
Bsu15I	ATCGAT	1 cut(s)	732
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	28, 312, 704
BsuTUI	ATCGAT	1 cut(s)	732
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	3 cut(s)	297, 425, 705
BtsIMutI	CAGTG	3 cut(s)	42, 461, 693
Cac8I	GCNNGC	4 cut(s)	131, 579, 712, 716
CaiI	CAGNNNCTG	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	732
CviAII	CATG	3 cut(s)	684, 706, 719
CviJI	RGCY	7 cut(s)	28, 133, 166, 312, 340, 616, 704
CviKI_1	RGCY	7 cut(s)	28, 133, 166, 312, 340, 616, 704
DdeI	CTNAG	2 cut(s)	134, 655
DpnI	GATC	4 cut(s)	414, 455, 661, 735
DpnII	GATC	4 cut(s)	412, 453, 659, 733
EaeI	YGGCCR	1 cut(s)	702
Eam1104I	CTCTTC	2 cut(s)	114, 177
EarI	CTCTTC	2 cut(s)	114, 177
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	705
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	228, 603
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	705
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	3 cut(s)	687, 709, 722
FatI	CATG	3 cut(s)	683, 705, 718
FauI	CCCGC	1 cut(s)	283
FauNDI	CATATG	2 cut(s)	114, 361
FokI	GGATG	3 cut(s)	284, 412, 712
FriOI	GRGCYC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	317, 378
GsaI	CCCAGC	1 cut(s)	344
HaeIII	GGCC	3 cut(s)	28, 312, 704
HapII	CCGG	2 cut(s)	29, 663
Hin1II	CATG	3 cut(s)	687, 709, 722
HinfI	GANTC	5 cut(s)	9, 70, 88, 294, 729
HpaII	CCGG	2 cut(s)	29, 663
Hpy188I	TCNGA	3 cut(s)	87, 170, 204
Hpy188III	TCNNGA	4 cut(s)	74, 435, 657, 663
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	684
HpyF3I	CTNAG	2 cut(s)	134, 655
Hsp92II	CATG	3 cut(s)	687, 709, 722
Kpn2I	TCCGGA	1 cut(s)	662
Kzo9I	GATC	4 cut(s)	412, 453, 659, 733
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	440
LweI	GCATC	3 cut(s)	394, 434, 500
MaeI	CTAG	2 cut(s)	317, 378
MalI	GATC	4 cut(s)	414, 455, 661, 735
MboI	GATC	4 cut(s)	412, 453, 659, 733
MboII	GAAGA	3 cut(s)	131, 194, 377
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	3 cut(s)	168, 550, 680
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	427
Mox20I	TGGCCA	1 cut(s)	704
Mph1103I	ATGCAT	1 cut(s)	387
MroI	TCCGGA	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	3 cut(s)	153, 255, 745
MslI	CAYNNNNRTG	1 cut(s)	698
Msp20I	TGGCCA	1 cut(s)	704
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	29, 663
MwoI	GCNNNNNNNGC	1 cut(s)	684
NcoI	CCATGG	1 cut(s)	705
NdeI	CATATG	2 cut(s)	114, 361
NdeII	GATC	4 cut(s)	412, 453, 659, 733
NlaIII	CATG	3 cut(s)	687, 709, 722
NlaIV	GGNNCC	3 cut(s)	27, 568, 661
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	687
PciSI	GCTCTTC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	4 cut(s)	9, 70, 294, 729
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	3 cut(s)	27, 568, 661
PspPI	GGNCC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	498
PstNI	CAGNNNCTG	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	659
RseI	CAYNNNNRTG	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	153, 255, 745
Sau3AI	GATC	4 cut(s)	412, 453, 659, 733
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	97
SduI	GDGCHC	3 cut(s)	168, 550, 680
SetI	ASST	5 cut(s)	126, 168, 255, 631, 672
SfaNI	GCATC	3 cut(s)	394, 434, 500
SfcI	CTRYAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	290
SspI	AATATT	2 cut(s)	82, 518
SspMI	CTAG	2 cut(s)	317, 378
SstI	GAGCTC	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	727, 732
TasI	AATT	1 cut(s)	102
TfiI	GAWTC	4 cut(s)	9, 70, 294, 729
Tru1I	TTAA	3 cut(s)	153, 255, 745
Tru9I	TTAA	3 cut(s)	153, 255, 745
TscAI	CASTG	3 cut(s)	42, 468, 700
TspDTI	ATGAA	4 cut(s)	208, 210, 361, 378
TspRI	CASTG	3 cut(s)	42, 468, 700
Vha464I	CTTAAG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	687
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	2 cut(s)	317, 378
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.