Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

23476078 .. 23478262

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCTCTGCTCCAGCAGACTCTTGGCCGTTTCTTTCGCCGTAAATCGGTGCAGTCCGTACGAACTGCATAGCGCCGGCTGCTCCAAATTCAGTTACCCAAGAAGCCCCATATCAACAAGCAGCTCCAGATGGCGATCCCTGGCCATGGCTTCGGAGCCCGACTCCTCCTCTTTCGCTCCGTCTGTCGATTCTGATCCCAATCCCTCCGCCGATACAAGCCCCGCCGGATTTTGTATCATAGAGGGGCCTGAAACGGTGCAGGACTTTGCCACAATGGAGCTGCAGGAAATTCAAGATTATATTCGGAATCGGCGCAACAAAATTTTCTTGCATATGGAGGAGGTTCGCAGGCTGAGGATACAACAGCGGATTAAACGCGCAGAGATTGGAGCGGTAAATGAAGATCAAGAAAACGAACTTCCTAGTTTTCCATCATTCATTCCCTTTTTGCCTCCCCTGAGTTCAGACAACCTTAAGCTGTATTATGCTTTTTGTTATTCAATTATTGCGGGGTTTATCCTTTTTGGTGGCCTCATAGCTCCCTCCTTGGAGTTGAAGTTGGGAATAGGAGGCACATCGTATAAAGATTTTATAGTAAATATGCATCTGCCATTGCAGTTGAGTCAAGTTGATCCCATAGTGGCGTCGTTCTCTGGAGGAGCAGTCGGAGTGATCTCAGCATTGATGGTAGTTGAAATAAACAATGTGAAACAGCAGGAGCATAAGCGATGCAAATATTGTCTTGGAACTGGATATCTTGCTTGTGCTCGTTGCTCCAGCACTGGAACCCTTGTTCTTACCGAACCAGTTTCAACAGTTGATGGCGGAAACCAGCCCCTTTCACTGCCAAAAACTGAAAGATGTTCAAATTGCTCAGGAGCGGGAAAGGTAATGTGCCCGACATGCCTTTGCACGGGAATGGCGATGGCAAGTGAACACGACCCTCGGATCGATCGACCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

35.01

Weight (kDa)

6.23

Isoelectric Point (pI)

60.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	392, 881
AccII	CGCG	1 cut(s)	378
AciI	CCGC	7 cut(s)	207, 222, 367, 392, 509, 825, 881
AclWI	GGATC	4 cut(s)	129, 188, 626, 956
AcoI	YGGCCR	2 cut(s)	24, 141
AcsI	RAATTY	3 cut(s)	86, 288, 321
AcyI	GRCGYC	1 cut(s)	644
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	45, 145, 913
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	6 cut(s)	293, 501, 556, 695, 813, 867
AjnI	CCWGG	1 cut(s)	138
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
AluBI	AGCT	4 cut(s)	123, 280, 478, 539
AluI	AGCT	4 cut(s)	123, 280, 478, 539
Alw21I	GWGCWC	1 cut(s)	769
AlwI	GGATC	4 cut(s)	129, 188, 626, 956
AoxI	GGCC	4 cut(s)	24, 141, 245, 529
ApeKI	GCWGC	3 cut(s)	78, 120, 280
ApoI	RAATTY	3 cut(s)	86, 288, 321
AspLEI	GCGC	3 cut(s)	74, 315, 380
AspS9I	GGNCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	899
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	769
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	65, 132, 267
BccI	CCATC	5 cut(s)	123, 439, 679, 815, 919
BceAI	ACGGC	2 cut(s)	11, 23
BciT130I	CCWGG	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	3 cut(s)	79, 121, 281
BlsI	GCNGC	3 cut(s)	80, 122, 282
Bme1390I	CCNGG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	3 cut(s)	156, 246, 787
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	613, 719
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	3 cut(s)	109, 675, 760
Bpu10I	CCTNAGC	2 cut(s)	353, 874
Bsa29I	ATCGAT	1 cut(s)	951
BsaBI	GATNNNNATC	3 cut(s)	133, 192, 198
BsaHI	GRCGYC	1 cut(s)	644
BsaJI	CCNNGG	4 cut(s)	138, 144, 546, 944
BsaXI	ACNNNNNCTCC	4 cut(s)	542, 572, 648, 678
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 145, 913
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	754, 787, 806
Bse3DI	GCAATG	1 cut(s)	611
Bse8I	GATNNNNATC	3 cut(s)	133, 192, 198
BseBI	CCWGG	1 cut(s)	140
BseCI	ATCGAT	1 cut(s)	951
BseDI	CCNNGG	4 cut(s)	138, 144, 546, 944
BseJI	GATNNNNATC	3 cut(s)	133, 192, 198
BseLI	CCNNNNNNNGG	3 cut(s)	45, 145, 913
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	4 cut(s)	344, 449, 690, 888
BseNI	ACTGG	3 cut(s)	754, 787, 806
BseRI	GAGGAG	4 cut(s)	154, 157, 353, 672
BseSI	GKGCMC	1 cut(s)	899
BseXI	GCAGC	3 cut(s)	65, 132, 267
BsgI	GTGCAG	2 cut(s)	70, 278
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	955
BshFI	GGCC	4 cut(s)	26, 143, 247, 531
BshVI	ATCGAT	1 cut(s)	951
BsiEI	CGRYCG	1 cut(s)	955
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	75, 225
BsiWI	CGTACG	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	45, 145, 913
BsnI	GGCC	4 cut(s)	26, 143, 247, 531
Bsp1286I	GDGCHC	3 cut(s)	159, 769, 899
Bsp143I	GATC	7 cut(s)	134, 193, 403, 631, 672, 948, 952
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	7 cut(s)	207, 222, 367, 392, 509, 825, 881
BspANI	GGCC	4 cut(s)	26, 143, 247, 531
BspCNI	CTCAG	4 cut(s)	345, 450, 689, 887
BspDI	ATCGAT	1 cut(s)	951
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	156, 246, 787
BspMAI	CTGCAG	1 cut(s)	285
BspPI	GGATC	4 cut(s)	129, 188, 626, 956
BspTI	CTTAAG	1 cut(s)	473
BsrBI	CCGCTC	2 cut(s)	392, 881
BsrDI	GCAATG	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	754, 787, 806
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	4 cut(s)	138, 144, 546, 944
BssMI	GATC	7 cut(s)	134, 193, 403, 631, 672, 948, 952
BssNI	GRCGYC	1 cut(s)	644
BssT1I	CCWWGG	2 cut(s)	144, 546
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	256, 817
BstACI	GRCGYC	1 cut(s)	644
BstAFI	CTTAAG	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	76, 350
BstDEI	CTNAG	4 cut(s)	353, 458, 676, 874
BstDSI	CCRYGG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	3 cut(s)	74, 315, 380
BstKTI	GATC	7 cut(s)	137, 196, 406, 634, 675, 951, 955
BstMBI	GATC	7 cut(s)	134, 193, 403, 631, 672, 948, 952
BstMCI	CGRYCG	1 cut(s)	955
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 903
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	906
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	281
BstSLI	GKGCMC	1 cut(s)	899
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	65, 132, 267
Bsu15I	ATCGAT	1 cut(s)	951
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	26, 143, 247, 531
BsuTUI	ATCGAT	1 cut(s)	951
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	2 cut(s)	742, 938
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	2 cut(s)	780, 842
Cac8I	GCNNGC	2 cut(s)	76, 350
CfoI	GCGC	3 cut(s)	74, 315, 380
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	245
ClaI	ATCGAT	1 cut(s)	951
CseI	GACGC	1 cut(s)	633
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	2 cut(s)	145, 903
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	4 cut(s)	353, 458, 676, 874
DpnI	GATC	7 cut(s)	136, 195, 405, 633, 674, 950, 954
DpnII	GATC	7 cut(s)	134, 193, 403, 631, 672, 948, 952
EaeI	YGGCCR	2 cut(s)	24, 141
EciI	GGCGGA	2 cut(s)	196, 840
Eco130I	CCWWGG	2 cut(s)	144, 546
Eco24I	GRGCYC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	755
EcoT14I	CCWWGG	2 cut(s)	144, 546
EcoT22I	ATGCAT	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	2 cut(s)	144, 546
FaeI	CATG	2 cut(s)	148, 906
FatI	CATG	2 cut(s)	144, 902
FauI	CCCGC	3 cut(s)	229, 502, 874
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	79, 121, 281
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	79, 121, 281
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	3 cut(s)	73, 314, 379
GluI	GCNGC	3 cut(s)	79, 121, 281
GsuI	CTGGAG	3 cut(s)	109, 675, 760
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	26, 143, 247, 531
HapII	CCGG	2 cut(s)	75, 225
HgaI	GACGC	1 cut(s)	633
HhaI	GCGC	3 cut(s)	74, 315, 380
Hin1I	GRCGYC	1 cut(s)	644
Hin1II	CATG	2 cut(s)	148, 906
Hin6I	GCGC	3 cut(s)	72, 313, 378
HinP1I	GCGC	3 cut(s)	72, 313, 378
HinfI	GANTC	5 cut(s)	18, 161, 188, 307, 622
HpaII	CCGG	2 cut(s)	75, 225
Hpy166II	GTNNAC	1 cut(s)	935
Hpy188I	TCNGA	6 cut(s)	154, 193, 306, 466, 668, 948
Hpy188III	TCNNGA	5 cut(s)	126, 293, 407, 654, 876
Hpy8I	GTNNAC	1 cut(s)	935
Hpy99I	CGWCG	1 cut(s)	649
HpyCH4III	ACNGT	2 cut(s)	256, 817
HpyCH4V	TGCA	9 cut(s)	51, 67, 259, 283, 331, 604, 616, 732, 912
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 903
HpyF3I	CTNAG	4 cut(s)	353, 458, 676, 874
Hsp92I	GRCGYC	1 cut(s)	644
Hsp92II	CATG	2 cut(s)	148, 906
HspAI	GCGC	3 cut(s)	72, 313, 378
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	7 cut(s)	134, 193, 403, 631, 672, 948, 952
Lsp1109I	GCAGC	3 cut(s)	65, 132, 267
LweI	GCATC	2 cut(s)	613, 719
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	7 cut(s)	136, 195, 405, 633, 674, 950, 954
MbiI	CCGCTC	2 cut(s)	392, 881
MboI	GATC	7 cut(s)	134, 193, 403, 631, 672, 948, 952
MboII	GAAGA	1 cut(s)	413
MhlI	GDGCHC	3 cut(s)	159, 769, 899
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	5 cut(s)	86, 288, 321, 501, 868
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	3 cut(s)	12, 155, 631
MmeI	TCCRAC	1 cut(s)	646
Mox20I	TGGCCA	1 cut(s)	143
Mph1103I	ATGCAT	1 cut(s)	606
MroNI	GCCGGC	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	372, 474
MslI	CAYNNNNRTG	1 cut(s)	917
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	367
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	2 cut(s)	75, 225
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	78, 903
NaeI	GCCGGC	1 cut(s)	76
NcoI	CCATGG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	7 cut(s)	134, 193, 403, 631, 672, 948, 952
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	148, 906
NlaIV	GGNNCC	3 cut(s)	156, 246, 787
NsiI	ATGCAT	1 cut(s)	606
NspI	RCATGY	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	2 cut(s)	920, 952
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	188, 307
Pfl23II	CGTACG	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	80, 122, 282
Ple19I	CGATCG	1 cut(s)	955
PleI	GAGTC	3 cut(s)	12, 155, 630
PpsI	GAGTC	3 cut(s)	12, 155, 630
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspLI	CGTACG	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	156, 246, 787
PspPI	GGNCC	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	285
PvuI	CGATCG	1 cut(s)	955
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	917
SaqAI	TTAA	2 cut(s)	372, 474
SatI	GCNGC	3 cut(s)	79, 121, 281
Sau3AI	GATC	7 cut(s)	134, 193, 403, 631, 672, 948, 952
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	3 cut(s)	12, 155, 631
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	3 cut(s)	159, 769, 899
SetI	ASST	7 cut(s)	125, 282, 345, 474, 480, 541, 891
SfaNI	GCATC	2 cut(s)	613, 719
SfcI	CTRYAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	5 cut(s)	86, 288, 321, 501, 868
SsiI	CCGC	7 cut(s)	207, 222, 367, 392, 509, 825, 881
SspI	AATATT	1 cut(s)	737
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	2 cut(s)	144, 546
TaaI	ACNGT	2 cut(s)	256, 817
TaqI	TCGA	3 cut(s)	186, 951, 955
TasI	AATT	5 cut(s)	86, 288, 321, 501, 868
TfiI	GAWTC	2 cut(s)	188, 307
Tru1I	TTAA	2 cut(s)	372, 474
Tru9I	TTAA	2 cut(s)	372, 474
TscAI	CASTG	2 cut(s)	787, 849
TseI	GCWGC	3 cut(s)	78, 120, 280
TspDTI	ATGAA	2 cut(s)	414, 427
TspGWI	ACGGA	2 cut(s)	45, 168
TspRI	CASTG	2 cut(s)	787, 849
Vha464I	CTTAAG	1 cut(s)	473
XapI	RAATTY	3 cut(s)	86, 288, 321
XceI	RCATGY	1 cut(s)	906
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.