Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031228.1

Orthogroup ID

OG0004621

Physical Location & Seq

Genomic Coordinates Reverse (-)

271 .. 1384

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031228.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atggtagttgaaataaacaatgtaaaactgcaggaggataagagatgcaaatattgtcttggaactggatatcttgcttgtgctcggtgttcaagcacaggaaccctcgtgcttgctgaagcagtatcaaccattgatggtggagaacagcctttatcactacctaaaaccgaaagatgttcaaactgctcaggatctggaaaggttatgtgccctacatgcctatgcactgggatggccatggcaagcgagcatgaccctcgaatcgatccctttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

9.91

Weight (kDa)

5.29

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61670 AT5G61670
fragaria_vesca	FvH4_7g26730 FvH4_7g26730 FvH4_7g26730
malus_domestica	MD01G1175600.v1.1 MD04G1149100.v1.1 MD07G1241900.v1.1 MD07G1243400.v1.1 MD07G1243800.v1.1 MD07G1243900.v1.1 MD07G1244500.v1.1 MD07G1245000.v1.1 MD07G1245500.v1.1 MD07G1245900.v1.1
prunus_persica	Prupe.2G270800_v2.0.a1
pyrus_communis	pycom01g18650 pycom07g21830 pycom07g21900 pycom07g22020
rosa_chinensis	RchiOBHm_Chr1g0373321
rosa_laevigata	RLG00000026827
rosa_multiflora	Rmu_sc0031228.1_g000001 Rmu_ssc0000435.1_g000006
rosa_roxburghii	Rroxscaffold_4G00284270
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386200 Rh1BG350300 Rh1CG363400 Rh1DG381200
rosa_wichuraiana	Rw1G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	202, 263
AcoI	YGGCCR	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	11, 93, 183
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	202, 263
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	239
BauI	CACGAG	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	85
BccI	CCATC	2 cut(s)	131, 229
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BfmI	CTRYAG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	103
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	70, 235
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	70, 235
BseSI	GKGCMC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	85, 215
Bsp143I	GATC	2 cut(s)	194, 268
Bsp19I	CCATGG	1 cut(s)	240
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	203
BspDI	ATCGAT	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	2 cut(s)	202, 263
BsrI	ACTGG	2 cut(s)	70, 235
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	2 cut(s)	194, 268
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	114, 247, 251
BstDEI	CTNAG	1 cut(s)	190
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	2 cut(s)	197, 271
BstMBI	GATC	2 cut(s)	194, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	239
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	114, 247, 251
CaiI	CAGNNNCTG	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	267
CviAII	CATG	3 cut(s)	219, 241, 254
CviJI	RGCY	2 cut(s)	151, 239
CviKI_1	RGCY	2 cut(s)	151, 239
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	2 cut(s)	196, 270
DpnII	GATC	2 cut(s)	194, 268
EaeI	YGGCCR	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	222, 244, 257
FaiI	YATR	5 cut(s)	209, 220, 226, 242, 255
FatI	CATG	3 cut(s)	218, 240, 253
FokI	GGATG	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	222, 244, 257
HinfI	GANTC	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	192, 198
HpyCH4V	TGCA	3 cut(s)	31, 48, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	190
Hsp92II	CATG	3 cut(s)	222, 244, 257
Kzo9I	GATC	2 cut(s)	194, 268
LpnPI	CCDG	6 cut(s)	17, 51, 84, 177, 183, 216
LweI	GCATC	1 cut(s)	35
MalI	GATC	2 cut(s)	196, 270
MboI	GATC	2 cut(s)	194, 268
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	85, 215
MlsI	TGGCCA	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	239
MnlI	CCTC	3 cut(s)	28, 116, 270
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	1 cut(s)	280
MslI	CAYNNNNRTG	2 cut(s)	223, 233
Msp20I	TGGCCA	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	2 cut(s)	194, 268
NlaIII	CATG	3 cut(s)	222, 244, 257
NlaIV	GGNNCC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	194
RseI	CAYNNNNRTG	2 cut(s)	223, 233
SaqAI	TTAA	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	194, 268
SduI	GDGCHC	2 cut(s)	85, 215
SetI	ASST	2 cut(s)	166, 207
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	223, 233
SspI	AATATT	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	240
TaqI	TCGA	2 cut(s)	262, 267
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TscAI	CASTG	1 cut(s)	235
TspRI	CASTG	1 cut(s)	235
XceI	RCATGY	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.